illumina/nirvana issues and pull requests

#44 - Possible error / point of confusion around canonical variant IDs in docs

Issue - State: closed - Opened by edawson almost 4 years ago - 3 comments

#44 - Possible error / point of confusion around canonical variant IDs in docs

Issue - State: closed - Opened by edawson almost 4 years ago - 3 comments

#43 - choosing one consequence from multiple annotation query

Issue - State: closed - Opened by prasundutta87 almost 4 years ago - 3 comments

#43 - choosing one consequence from multiple annotation query

Issue - State: closed - Opened by prasundutta87 almost 4 years ago - 3 comments

#42 - Truncated supplementary data source files

Issue - State: closed - Opened by junyanzho about 4 years ago - 4 comments
Labels: downloader

#42 - Truncated supplementary data source files

Issue - State: closed - Opened by junyanzho about 4 years ago - 4 comments
Labels: downloader

#41 - Additional species

Issue - State: closed - Opened by rahulvrane over 4 years ago - 7 comments
Labels: enhancement

#41 - Additional species

Issue - State: closed - Opened by rahulvrane over 4 years ago - 7 comments
Labels: enhancement

#40 - Got Error when using nirvana to do annotate

Issue - State: closed - Opened by LvLH over 4 years ago - 2 comments

#40 - Got Error when using nirvana to do annotate

Issue - State: closed - Opened by LvLH over 4 years ago - 2 comments

#39 - Please update schema version

Issue - State: closed - Opened by hakuliu over 4 years ago - 1 comment

#39 - Please update schema version

Issue - State: closed - Opened by hakuliu over 4 years ago - 1 comment

#38 - Plans for upcoming cache data updates?

Issue - State: closed - Opened by WestleyASherman over 4 years ago - 8 comments

#38 - Plans for upcoming cache data updates?

Issue - State: closed - Opened by WestleyASherman over 4 years ago - 8 comments

#37 - Usage manual/guide

Issue - State: closed - Opened by jerryliu2005 over 4 years ago - 1 comment

#37 - Usage manual/guide

Issue - State: closed - Opened by jerryliu2005 over 4 years ago - 1 comment

#36 - Build failure on Ubuntu

Issue - State: closed - Opened by jerryliu2005 over 4 years ago - 1 comment

#36 - Build failure on Ubuntu

Issue - State: closed - Opened by jerryliu2005 over 4 years ago - 1 comment

#35 - JSON parsing. Am I on crazy pills?

Issue - State: open - Opened by davemcg over 4 years ago - 4 comments

#35 - JSON parsing. Am I on crazy pills?

Issue - State: open - Opened by davemcg over 4 years ago - 4 comments

#34 - TestNirvana.sh

Issue - State: closed - Opened by camtorbri over 4 years ago - 4 comments

#34 - TestNirvana.sh

Issue - State: closed - Opened by camtorbri over 4 years ago - 4 comments

#33 - Mismatch global Minor Allele Frequency

Issue - State: closed - Opened by SamGLZ almost 5 years ago - 1 comment

#33 - Mismatch global Minor Allele Frequency

Issue - State: closed - Opened by SamGLZ almost 5 years ago - 1 comment

#32 - Splice site predictions

Issue - State: closed - Opened by elly1502 almost 5 years ago - 1 comment

#32 - Splice site predictions

Issue - State: closed - Opened by elly1502 almost 5 years ago - 1 comment

#31 - Multiple queries using Jasix do not produce valid JSON

Pull Request - State: closed - Opened by stekaz about 5 years ago - 1 comment

#31 - Multiple queries using Jasix do not produce valid JSON

Pull Request - State: closed - Opened by stekaz about 5 years ago - 1 comment

#30 - A Question about Consequences of Annotation

Issue - State: closed - Opened by SamGLZ about 5 years ago - 1 comment

#30 - A Question about Consequences of Annotation

Issue - State: closed - Opened by SamGLZ about 5 years ago - 1 comment

#29 - TestNirvana.sh fails

Issue - State: closed - Opened by nicokrez over 5 years ago - 1 comment

#29 - TestNirvana.sh fails

Issue - State: closed - Opened by nicokrez over 5 years ago - 1 comment

#28 - Nirvana 3.5.0 could not output vcf format results

Issue - State: closed - Opened by jjlaisnoopy over 5 years ago - 1 comment

#28 - Nirvana 3.5.0 could not output vcf format results

Issue - State: closed - Opened by jjlaisnoopy over 5 years ago - 1 comment

#27 - Nirvana JSON file formats (small variants) documentation

Issue - State: closed - Opened by pablo-esteban almost 6 years ago - 2 comments

#27 - Nirvana JSON file formats (small variants) documentation

Issue - State: closed - Opened by pablo-esteban almost 6 years ago - 2 comments

#26 - Source code of BlockCompression

Issue - State: closed - Opened by fo40225 almost 6 years ago - 1 comment

#26 - Source code of BlockCompression

Issue - State: closed - Opened by fo40225 almost 6 years ago - 1 comment

#25 - Output error messages to stderr instead of stdout (#24)

Pull Request - State: open - Opened by ivanwick about 6 years ago

#25 - Output error messages to stderr instead of stdout (#24)

Pull Request - State: open - Opened by ivanwick about 6 years ago

#24 - Output error messages to stderr instead of stdout

Issue - State: open - Opened by ivanwick about 6 years ago
Labels: enhancement

#24 - Output error messages to stderr instead of stdout

Issue - State: open - Opened by ivanwick about 6 years ago
Labels: enhancement

#23 - Why do I encounter "Illegal instruction" error?

Issue - State: closed - Opened by epioneMW over 6 years ago - 2 comments

#23 - Why do I encounter "Illegal instruction" error?

Issue - State: closed - Opened by epioneMW over 6 years ago - 2 comments

#22 - feature request: vcf.bgz output

Issue - State: closed - Opened by dbrami over 6 years ago - 1 comment

#22 - feature request: vcf.bgz output

Issue - State: closed - Opened by dbrami over 6 years ago - 1 comment

#21 - "latest" is not a tag number so the config script does not behave well

Issue - State: closed - Opened by dbrami over 6 years ago - 1 comment

#21 - "latest" is not a tag number so the config script does not behave well

Issue - State: closed - Opened by dbrami over 6 years ago - 1 comment

#20 - VCF contigs with pipe character (1|NT_113878.1)

Issue - State: closed - Opened by WestleyASherman over 6 years ago - 1 comment

#20 - VCF contigs with pipe character (1|NT_113878.1)

Issue - State: closed - Opened by WestleyASherman over 6 years ago - 1 comment

#19 - Multi-thread Annotation

Issue - State: open - Opened by JasonYao81000 almost 7 years ago - 4 comments
Labels: enhancement

#19 - Multi-thread Annotation

Issue - State: open - Opened by JasonYao81000 almost 7 years ago - 4 comments
Labels: enhancement

#18 - Directly output JSON file, NOT .json.gz?

Issue - State: closed - Opened by JasonYao81000 almost 7 years ago - 3 comments
Labels: bug

#18 - Directly output JSON file, NOT .json.gz?

Issue - State: closed - Opened by JasonYao81000 almost 7 years ago - 3 comments
Labels: bug

#17 - LRG Support

Issue - State: open - Opened by rjsicko almost 7 years ago - 1 comment
Labels: enhancement

#17 - LRG Support

Issue - State: open - Opened by rjsicko almost 7 years ago - 1 comment
Labels: enhancement

#16 - file generation command in header

Issue - State: open - Opened by brugger about 7 years ago - 1 comment
Labels: enhancement

#16 - file generation command in header

Issue - State: open - Opened by brugger about 7 years ago - 1 comment
Labels: enhancement

#15 - Illegal instruction

Issue - State: closed - Opened by brugger about 7 years ago

#15 - Illegal instruction

Issue - State: closed - Opened by brugger about 7 years ago

#14 - Nirvana 2.0.1 run test data on Ubuntu 16.04 error

Issue - State: closed - Opened by yusmile0618 about 7 years ago - 3 comments

#14 - Nirvana 2.0.1 run test data on Ubuntu 16.04 error

Issue - State: closed - Opened by yusmile0618 about 7 years ago - 3 comments

#13 - Nirvana 2.0.1 throws exception on Ubuntu 17.10

Issue - State: closed - Opened by dvav about 7 years ago - 2 comments

#13 - Nirvana 2.0.1 throws exception on Ubuntu 17.10

Issue - State: closed - Opened by dvav about 7 years ago - 2 comments

#12 - JSON output file format: plans to add gnomAD?

Issue - State: closed - Opened by WestleyASherman over 7 years ago - 4 comments
Labels: annotation data

#12 - JSON output file format: plans to add gnomAD?

Issue - State: closed - Opened by WestleyASherman over 7 years ago - 4 comments
Labels: annotation data

#11 - Documentation errors

Issue - State: open - Opened by johnc1231 over 7 years ago
Labels: documentation

#11 - Documentation errors

Issue - State: open - Opened by johnc1231 over 7 years ago
Labels: documentation

#10 - Release Timeline?

Issue - State: closed - Opened by johnc1231 over 7 years ago - 3 comments
Labels: releases

#10 - Release Timeline?

Issue - State: closed - Opened by johnc1231 over 7 years ago - 3 comments
Labels: releases

#9 - Script or hint for parsing JSON file

Issue - State: open - Opened by ghost almost 8 years ago - 5 comments
Labels: enhancement

#9 - Script or hint for parsing JSON file

Issue - State: open - Opened by ghost almost 8 years ago - 5 comments
Labels: enhancement

#8 - Trying out Nirvana

Issue - State: closed - Opened by deepakunni3 almost 8 years ago - 4 comments
Labels: annotation data

#8 - Trying out Nirvana

Issue - State: closed - Opened by deepakunni3 almost 8 years ago - 4 comments
Labels: annotation data

#7 - New JSON documentation does not agree with output

Issue - State: closed - Opened by johnc1231 almost 8 years ago - 3 comments
Labels: documentation

#7 - New JSON documentation does not agree with output

Issue - State: closed - Opened by johnc1231 almost 8 years ago - 3 comments
Labels: documentation

#6 - Input string was not in a correct format

Issue - State: closed - Opened by viktorlj almost 8 years ago - 6 comments
Labels: irreproducible

#5 - Broken link in getting started

Issue - State: closed - Opened by johnc1231 almost 8 years ago - 1 comment
Labels: documentation

#4 - Some Undocumented JSON Fields

Issue - State: closed - Opened by johnc1231 almost 8 years ago - 2 comments
Labels: documentation

#3 - Features/stdout

Pull Request - State: closed - Opened by MichaelStromberg almost 8 years ago - 1 comment

#2 - No way to send output to stdout?

Issue - State: closed - Opened by johnc1231 almost 8 years ago - 7 comments
Labels: command line

#1 - Features/annotator refactor 2324

Pull Request - State: closed - Opened by MichaelStromberg almost 8 years ago

GitHub / illumina/nirvana issues and pull requests