Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / illumina/hap.py issues and pull requests

#49 - Make cmake respect CC and PATH compiler overrides

Pull Request - State: open - Opened by EvanTheB over 6 years ago - 2 comments

#49 - Make cmake respect CC and PATH compiler overrides

Pull Request - State: open - Opened by EvanTheB over 6 years ago - 2 comments

#48 - Error in creating mount source path with docker

Issue - State: closed - Opened by BowenKwan over 6 years ago - 4 comments

#48 - Error in creating mount source path with docker

Issue - State: closed - Opened by BowenKwan over 6 years ago - 4 comments

#47 - Haploid genome benchmarking

Issue - State: closed - Opened by ksw9 over 6 years ago - 7 comments

#47 - Haploid genome benchmarking

Issue - State: closed - Opened by ksw9 over 6 years ago - 7 comments

#46 - Buffer overflow in hap.py’s `preprocess` program

Issue - State: open - Opened by ThomasHickman over 6 years ago - 1 comment

#46 - Buffer overflow in hap.py’s `preprocess` program

Issue - State: open - Opened by ThomasHickman over 6 years ago - 1 comment

#45 - typos?

Pull Request - State: closed - Opened by janinl over 6 years ago - 1 comment

#45 - typos?

Pull Request - State: closed - Opened by janinl over 6 years ago - 1 comment

#44 - Counting local matches

Issue - State: closed - Opened by apregier over 6 years ago - 3 comments

#44 - Counting local matches

Issue - State: closed - Opened by apregier over 6 years ago - 3 comments

#43 - qfy.py killed

Issue - State: closed - Opened by teodora-aleksic over 6 years ago - 5 comments

#43 - qfy.py killed

Issue - State: closed - Opened by teodora-aleksic over 6 years ago - 5 comments

#42 - Support for allele only comparisons

Issue - State: open - Opened by mozack over 6 years ago - 7 comments

#42 - Support for allele only comparisons

Issue - State: open - Opened by mozack over 6 years ago - 7 comments

#41 - Problems with VCFv4.2: Hap.py v0.3.10 can not deal with asterisk at "ALT" column

Issue - State: closed - Opened by mziegler12 almost 7 years ago - 12 comments

#41 - Problems with VCFv4.2: Hap.py v0.3.10 can not deal with asterisk at "ALT" column

Issue - State: closed - Opened by mziegler12 almost 7 years ago - 12 comments

#40 - quantify returned non-zero exit status -11

Issue - State: open - Opened by ifiddes-10x-zz almost 7 years ago - 5 comments

#39 - Hap.py installation error

Issue - State: closed - Opened by pinninti19 almost 7 years ago - 19 comments

#39 - Hap.py installation error

Issue - State: closed - Opened by pinninti19 almost 7 years ago - 19 comments

#38 - Potential bug with hom-alt truth and multiple het candidate representation

Issue - State: open - Opened by depristo almost 7 years ago - 1 comment

#38 - Potential bug with hom-alt truth and multiple het candidate representation

Issue - State: open - Opened by depristo almost 7 years ago - 1 comment

#37 - pre.py: Segfault while running `preprocess`

Issue - State: open - Opened by jkmatila almost 7 years ago - 5 comments

#37 - pre.py: Segfault while running `preprocess`

Issue - State: open - Opened by jkmatila almost 7 years ago - 5 comments

#36 - pre.py header contig INFO issue

Issue - State: closed - Opened by m891115891117 almost 7 years ago - 3 comments

#36 - pre.py header contig INFO issue

Issue - State: closed - Opened by m891115891117 almost 7 years ago - 3 comments

#35 - Cannot find matching haplotype pairs and Too many het nodes

Issue - State: closed - Opened by raonyguimaraes almost 7 years ago - 1 comment

#35 - Cannot find matching haplotype pairs and Too many het nodes

Issue - State: closed - Opened by raonyguimaraes almost 7 years ago - 1 comment

#34 - happy treats variants that aren't fully within the confident regions as confident

Issue - State: open - Opened by depristo almost 7 years ago - 3 comments

#34 - happy treats variants that aren't fully within the confident regions as confident

Issue - State: open - Opened by depristo almost 7 years ago - 3 comments

#33 - Incorrect FN assignment in latest hap.py

Issue - State: open - Opened by depristo almost 7 years ago - 2 comments

#33 - Incorrect FN assignment in latest hap.py

Issue - State: open - Opened by depristo almost 7 years ago - 2 comments

#32 - CalledProcessError: Command xcmp

Issue - State: open - Opened by simoncchu almost 7 years ago - 8 comments

#32 - CalledProcessError: Command xcmp

Issue - State: open - Opened by simoncchu almost 7 years ago - 8 comments

#31 - fix bold GFM rendering

Pull Request - State: closed - Opened by adamjorr almost 7 years ago - 1 comment

#31 - fix bold GFM rendering

Pull Request - State: closed - Opened by adamjorr almost 7 years ago - 1 comment

#29 - hap.py failed when running validation process

Issue - State: closed - Opened by m891115891117 almost 7 years ago - 2 comments

#29 - hap.py failed when running validation process

Issue - State: closed - Opened by m891115891117 almost 7 years ago - 2 comments

#28 - regex error despite using gcc 4.9

Issue - State: closed - Opened by patrickturko about 7 years ago - 4 comments

#28 - regex error despite using gcc 4.9

Issue - State: closed - Opened by patrickturko about 7 years ago - 4 comments

#27 - Support for complex SVs

Issue - State: open - Opened by d-cameron about 7 years ago - 2 comments

#27 - Support for complex SVs

Issue - State: open - Opened by d-cameron about 7 years ago - 2 comments

#26 - Confidence intervals for hap.py

Issue - State: closed - Opened by andyb3 about 7 years ago - 4 comments

#26 - Confidence intervals for hap.py

Issue - State: closed - Opened by andyb3 about 7 years ago - 4 comments

#25 - install error

Issue - State: closed - Opened by splaisan about 7 years ago - 3 comments

#25 - install error

Issue - State: closed - Opened by splaisan about 7 years ago - 3 comments

#24 - Problems while compiling

Issue - State: closed - Opened by DrRetro about 7 years ago - 3 comments

#24 - Problems while compiling

Issue - State: closed - Opened by DrRetro about 7 years ago - 3 comments

#23 - gvcf2bed issue

Issue - State: closed - Opened by keyvanelhami about 7 years ago - 5 comments

#23 - gvcf2bed issue

Issue - State: closed - Opened by keyvanelhami about 7 years ago - 5 comments

#22 - Preprocessing and xcmp both takes unusually long time to complete

Issue - State: closed - Opened by ManavalanG over 7 years ago - 4 comments

#22 - Preprocessing and xcmp both takes unusually long time to complete

Issue - State: closed - Opened by ManavalanG over 7 years ago - 4 comments

#21 - replace DataFrame.sort with DataFrame.sort_values

Pull Request - State: closed - Opened by jq2252 over 7 years ago - 1 comment

#21 - replace DataFrame.sort with DataFrame.sort_values

Pull Request - State: closed - Opened by jq2252 over 7 years ago - 1 comment

#20 - install failed at Ubuntu 16.04, 'DataFrame' object has no attribute 'sort'

Issue - State: closed - Opened by jq2252 over 7 years ago - 1 comment

#20 - install failed at Ubuntu 16.04, 'DataFrame' object has no attribute 'sort'

Issue - State: closed - Opened by jq2252 over 7 years ago - 1 comment

#19 - v0.3.8 release

Pull Request - State: closed - Opened by pkrusche over 7 years ago

#19 - v0.3.8 release

Pull Request - State: closed - Opened by pkrusche over 7 years ago

#18 - raise Exception("Input file %s does not exist." % args.vcf2)

Issue - State: closed - Opened by a1618617 over 7 years ago

#18 - raise Exception("Input file %s does not exist." % args.vcf2)

Issue - State: closed - Opened by a1618617 over 7 years ago

#17 - How to call hap,.py with vcfeval for joint vcf.

Issue - State: closed - Opened by sanketshah11 over 7 years ago - 3 comments

#17 - How to call hap,.py with vcfeval for joint vcf.

Issue - State: closed - Opened by sanketshah11 over 7 years ago - 3 comments

#16 - Request for rtgtools tag on Docker Hub

Issue - State: closed - Opened by GodloveD over 7 years ago - 6 comments

#16 - Request for rtgtools tag on Docker Hub

Issue - State: closed - Opened by GodloveD over 7 years ago - 6 comments

#15 - Install fail (variant decomposition test)

Issue - State: closed - Opened by davemcg over 7 years ago - 4 comments

#14 - true positive is not counted

Issue - State: closed - Opened by shiqioh over 7 years ago - 3 comments

#13 - install.py failed when Multimerge test

Issue - State: closed - Opened by wangyugui over 7 years ago - 13 comments

#12 - HAP.PY does not work without a bed file input.

Issue - State: closed - Opened by sanketshah11 almost 8 years ago - 3 comments

#11 - Preprocess jobs failing without specific error message

Issue - State: closed - Opened by leecbaker almost 8 years ago - 2 comments

#10 - hap.py can't be run from a symlink (fix included)

Issue - State: closed - Opened by leecbaker almost 8 years ago - 2 comments

#9 - Error while installation

Issue - State: closed - Opened by NitinMandloi about 8 years ago - 7 comments

#8 - Support for gVCF

Issue - State: closed - Opened by lijiayong over 8 years ago - 1 comment

#7 - Possible incorrect handling of incoherent VCFs

Issue - State: closed - Opened by brendanofallon almost 9 years ago - 2 comments

#6 - Requires 'chr' for contig names in all analyses?

Issue - State: closed - Opened by brendanofallon almost 9 years ago - 3 comments

#5 - confirm numbers for one of the Illumina BaseSpace Hiseq V4 reference datasets

Issue - State: closed - Opened by avilella almost 9 years ago - 5 comments

#4 - Exception: Cannot read sample names from truth input file

Issue - State: closed - Opened by avilella almost 9 years ago - 3 comments

#3 - pointer to a prebuilt docker image and running instructions?

Issue - State: closed - Opened by avilella almost 9 years ago - 7 comments

#2 - sudo docker build .

Issue - State: closed - Opened by avilella almost 9 years ago - 12 comments

#1 - Failed installation: MacOSX 10.10.5

Issue - State: closed - Opened by deannachurch about 9 years ago - 11 comments