Ecosyste.ms: Issues

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GitHub / illumina/gvcfgenotyper issues and pull requests

#21 - Depth block error

Issue - State: closed - Opened by eabernathy-avalo over 1 year ago - 1 comment

#21 - Depth block error

Issue - State: closed - Opened by eabernathy-avalo over 1 year ago - 1 comment

#20 - Can gvcfgenotypes do merging after filtering " pass" calls from each gVCF?

Issue - State: closed - Opened by gaom001 almost 2 years ago - 1 comment

#20 - Can gvcfgenotypes do merging after filtering " pass" calls from each gVCF?

Issue - State: closed - Opened by gaom001 almost 2 years ago - 1 comment

#18 - Flag FILTER only with "."

Issue - State: closed - Opened by Talo07 about 2 years ago - 3 comments

#17 - Running gvcf genotyper for each chromosome and contigs

Issue - State: closed - Opened by AmanahLW over 2 years ago - 2 comments

#17 - Running gvcf genotyper for each chromosome and contigs

Issue - State: closed - Opened by AmanahLW over 2 years ago - 2 comments

#16 - Issue with merging gVCFs using a BED file to define regions

Issue - State: closed - Opened by dalmiaa over 3 years ago - 12 comments
Labels: question

#16 - Issue with merging gVCFs using a BED file to define regions

Issue - State: closed - Opened by dalmiaa over 3 years ago - 12 comments
Labels: question

#15 - Hail plugin question

Issue - State: closed - Opened by samkleeman1 almost 4 years ago - 1 comment

#15 - Hail plugin question

Issue - State: closed - Opened by samkleeman1 almost 4 years ago - 1 comment

#14 - Assertion error on Strelka2 gVCFs

Issue - State: closed - Opened by kaiedasz over 4 years ago - 10 comments

#14 - Assertion error on Strelka2 gVCFs

Issue - State: closed - Opened by kaiedasz over 4 years ago - 10 comments

#13 - GLIBCXX 3.4.22 Error when invoking gvcfgenotyper

Issue - State: closed - Opened by omoba123 almost 5 years ago - 2 comments
Labels: bug

#13 - GLIBCXX 3.4.22 Error when invoking gvcfgenotyper

Issue - State: closed - Opened by omoba123 almost 5 years ago - 2 comments
Labels: bug

#12 - undescribed stopage in large cohort

Issue - State: closed - Opened by mwilkers about 5 years ago - 3 comments

#11 - Error: Read depth

Issue - State: closed - Opened by hcurley2 over 5 years ago - 2 comments

#10 - GQ field description

Issue - State: closed - Opened by robinpalvadeau over 5 years ago - 5 comments

#9 - providing a list of variants to genotype

Issue - State: open - Opened by clairepalles almost 6 years ago - 7 comments
Labels: enhancement

#8 - gvcfGenotyper taking too much time for MT chromosome

Issue - State: closed - Opened by ajaarma almost 6 years ago - 8 comments
Labels: question

#7 - Memory question

Issue - State: closed - Opened by mmoisse almost 6 years ago - 6 comments

#6 - Failing to merge Illumina genome.vcf's

Issue - State: closed - Opened by mmoisse over 6 years ago - 4 comments

#5 - dragen gvcf merge error

Issue - State: closed - Opened by huangl07 over 6 years ago - 5 comments

#4 - Wrong number of fields for INFO/GC at multi-allelic sites

Issue - State: closed - Opened by olest over 6 years ago - 1 comment
Labels: bug

#3 - Rounding error in Phred score

Issue - State: closed - Opened by olest over 6 years ago - 1 comment
Labels: bug

#2 - passing filter (FT) missing from output

Issue - State: closed - Opened by mwilkers almost 7 years ago - 2 comments

#1 - First gvcfgenotyper trial

Issue - State: closed - Opened by PedroBarbosa almost 7 years ago - 2 comments