illumina/dragmap issues and pull requests

#64 - bestScore > 0 failed

Issue - State: open - Opened by mccafj02 5 months ago

#63 - Missing cstdint in headers

Issue - State: open - Opened by apraga 7 months ago

#62 - Duplicates

Issue - State: open - Opened by ghost 8 months ago

#61 - Dragen variant calling

Issue - State: open - Opened by j0ntt 8 months ago - 3 comments

#60 - Need a precision on Dragmap's alignment behavior in duplicated regions

Issue - State: open - Opened by lucmarchandhsj 11 months ago

#59 - Illegal instruction (core dumped)

Issue - State: open - Opened by jstraubhr about 1 year ago

#58 - installing DRAGMAP on dragen server

Issue - State: open - Opened by jstraubhr about 1 year ago

#57 - Segmentation fault with large reference genome

Issue - State: open - Opened by TomofumiSaka about 1 year ago - 1 comment

#56 - fix overflow number of reference contig

Pull Request - State: open - Opened by TomofumiSaka about 1 year ago

#55 - fix overflow TableCount

Pull Request - State: open - Opened by TomofumiSaka about 1 year ago

#54 - -bash: dragon-os: command not found

Issue - State: open - Opened by Jokendo-collab over 1 year ago

#53 - Always call next() on both tokenizers, to make sure both r1 and r2 files are read to the end

Pull Request - State: open - Opened by lgruen over 1 year ago

#52 - XQ Tag

Issue - State: open - Opened by MateuszMarynowski over 1 year ago - 5 comments

#51 - DRAGMAP- Error in decompHashTableAutoHits

Issue - State: open - Opened by mercywilliams160896 almost 2 years ago

#50 - Version and software information not properly stated

Issue - State: open - Opened by jamigo almost 2 years ago

#50 - Version and software information not properly stated

Issue - State: open - Opened by jamigo almost 2 years ago

#49 - DRAGMAP installation

Issue - State: open - Opened by mtaema almost 2 years ago

#48 - fix intel compiler build break

Pull Request - State: open - Opened by fo40225 almost 2 years ago

#47 - Segmentation fault version 1.3.0

Issue - State: open - Opened by FriederikeHanssen about 2 years ago - 16 comments

#46 - RG PL field value is not spec compliant

Issue - State: open - Opened by jkbonfield about 2 years ago

#45 - Illegal instruction (core dumped)

Issue - State: open - Opened by masoudedi about 2 years ago

#44 - Compressed extend table index doesn't match hash table size

Issue - State: open - Opened by hddesai over 2 years ago - 3 comments

#43 - Segmentation fault (core dumped) when building a hash table

Issue - State: open - Opened by atimms over 2 years ago - 2 comments

#42 - iostream error 4

Issue - State: open - Opened by yangyxt over 2 years ago - 2 comments

#41 - Assertion `inputR1.eof()` failed [new]

Issue - State: open - Opened by vladsavelyev over 2 years ago - 3 comments

#41 - Assertion `inputR1.eof()` failed [new]

Issue - State: open - Opened by vladsavelyev over 2 years ago - 3 comments

#40 - unable to install conda package

Issue - State: open - Opened by zhan6021 over 2 years ago - 3 comments

#39 - unmapped BAM as input

Issue - State: closed - Opened by georgiiprovisor over 2 years ago - 1 comment

#38 - Error when trying to make with the source code

Issue - State: closed - Opened by nvnieuwk over 2 years ago - 2 comments

#37 - segmentation fault issue

Issue - State: open - Opened by hddesai over 2 years ago - 12 comments

#36 - Docker image for DRAGMAP

Issue - State: closed - Opened by skchronicles over 2 years ago - 6 comments

#35 - Forcing smith waterman on all candidatealignments

Issue - State: open - Opened by kokyriakidis over 2 years ago

#34 - Update conda package

Issue - State: closed - Opened by vladsavelyev over 2 years ago - 3 comments

#33 - Aligning to chm13v2

Issue - State: open - Opened by knightjimr over 2 years ago - 8 comments

#32 - Add v2 fasta masks from Illumina

Pull Request - State: open - Opened by ckandoth over 2 years ago

#31 - Confirmed non-determinism in the DRAGMAP aligner output

Issue - State: open - Opened by droazen over 2 years ago - 12 comments

#30 - does not work with file descriptors?

Issue - State: open - Opened by grenaud over 2 years ago - 1 comment

#29 - does --num-threads work?

Issue - State: open - Opened by grenaud over 2 years ago - 4 comments

#28 - Read completely soft-clipped

Issue - State: open - Opened by fgvieira over 2 years ago - 3 comments

#27 - Multiple issues with commit c87d93a

Issue - State: open - Opened by biork over 2 years ago - 5 comments

#26 - Segmentation fault. --build-hash-table

Issue - State: open - Opened by sukhanovaxenia almost 3 years ago - 3 comments

#25 - FASTA input file support?

Issue - State: open - Opened by niemasd almost 3 years ago

#24 - Reading from stdin

Issue - State: open - Opened by vladsavelyev almost 3 years ago - 2 comments

#23 - Requesting primary data for an invalid seed

Issue - State: closed - Opened by davetang almost 3 years ago - 3 comments

#22 - Segmentation fault (core dumped) for building index

Issue - State: closed - Opened by grenaud almost 3 years ago - 16 comments

#21 - How high quality pairs are defined in DRAGMAP

Issue - State: open - Opened by xie186 almost 3 years ago

#20 - Reference file to big to build hash table

Issue - State: open - Opened by jlipovac almost 3 years ago - 1 comment

#19 - Where to download `--ht-mask-bed=fasta_mask/hg38_alt_mask.bed`

Issue - State: closed - Opened by xie186 almost 3 years ago - 2 comments

#18 - conda installation error

Issue - State: closed - Opened by jmschrei almost 3 years ago - 4 comments

#17 - compilation fails on alpine linux

Issue - State: closed - Opened by stephenturner almost 3 years ago - 1 comment

#16 - Problem with Number of duplicate marked and mate reads

Issue - State: closed - Opened by magorbe almost 3 years ago - 2 comments

#15 - Reporting all alignments

Issue - State: open - Opened by donovan-h-parks almost 3 years ago - 3 comments

#14 - useless space in @PG

Pull Request - State: open - Opened by lindenb almost 3 years ago

#13 - Install error in aws centos

Issue - State: open - Opened by VennoFang about 3 years ago

#12 - mapper produces alignments with impossible coordinates

Issue - State: open - Opened by biork about 3 years ago - 3 comments

#11 - Dragmap failed ERROR: This thread caught an exception first

Issue - State: open - Opened by quentin67100 about 3 years ago - 27 comments

#10 - Use gnu99 instead of c99, as strdup is not part of C99

Pull Request - State: open - Opened by lgruen about 3 years ago

#9 - Feature request: set @RG header(s)

Issue - State: open - Opened by matthdsm about 3 years ago - 1 comment

#8 - Feature request: preserve Ubam tags

Issue - State: open - Opened by matthdsm about 3 years ago - 4 comments

#7 - DragMap failure

Issue - State: open - Opened by Abusamra about 3 years ago - 6 comments

#6 - Assertion `inputR1.eof()' failed

Issue - State: closed - Opened by yangyxt about 3 years ago - 6 comments

#5 - Segmentation fault (banded_sw)

Issue - State: closed - Opened by arun-sub about 3 years ago - 6 comments

#4 - Segmentation fault: decodeRcBase (Sam.hpp)

Issue - State: closed - Opened by arun-sub over 3 years ago - 2 comments

#3 - Missing ALT aware support

Issue - State: closed - Opened by MikeMallard over 3 years ago - 5 comments

#2 - Missing License File

Issue - State: closed - Opened by jonn-smith over 3 years ago - 1 comment

#1 - Missing decoy sequence

Issue - State: open - Opened by slw287r over 3 years ago

GitHub / illumina/dragmap issues and pull requests