illumina/beadarrayfiles issues and pull requests

#42 - genotype call for probe

Issue - State: open - Opened by cmccabe0728 about 2 months ago - 1 comment

#41 - locus_summary.py output

Issue - State: open - Opened by cmccabe0728 4 months ago

#40 - python3 support

Issue - State: closed - Opened by cmccabe0728 7 months ago - 3 comments

#39 - Removes references to autoconvert/call, beeline, iaap-cli and points …

Pull Request - State: closed - Opened by jzieve 8 months ago

#38 - Release 1.3.4

Pull Request - State: closed - Opened by mialam24 11 months ago

#37 - Version updated to 1.3.4

Pull Request - State: closed - Opened by mialam24 11 months ago

#36 - support more clusterfile versions

Pull Request - State: closed - Opened by mialam24 11 months ago

#35 - Added Dockerfile to be used with ICA Nextflow pipeline

Pull Request - State: closed - Opened by mialam24 over 1 year ago - 1 comment

#34 - Exception: Data block version in cluster file 7 not supported

Issue - State: closed - Opened by brettva over 1 year ago - 3 comments

#33 - docs: better format markdown with example usage

Pull Request - State: closed - Opened by lmtani almost 2 years ago - 2 comments

#32 - Fix for LocusAggregate.aggregate_samples

Pull Request - State: closed - Opened by daveware-nv about 2 years ago

#31 - LocusAggregate.aggregate_samples only populates first LocusAggregate

Issue - State: closed - Opened by daveware-nv about 2 years ago - 2 comments

#30 - gtc to plink ped format - 0|G instead of A|G

Issue - State: open - Opened by 1teaspoon over 2 years ago - 1 comment

#29 - Obtaining GC and GT scores as columns in gtc_final_report.py

Issue - State: open - Opened by evilvenom almost 3 years ago - 1 comment

#28 - Error on calling TOP_strand genotypes

Issue - State: closed - Opened by zihhuafang over 3 years ago - 2 comments

#27 - Error: Exception: GTC file is incomplete

Issue - State: open - Opened by tengfeixiaozhu almost 4 years ago - 8 comments

#26 - Gentrain score in ClusterFile.py

Issue - State: open - Opened by Derrup almost 4 years ago - 1 comment

#25 - Release 1.3.3

Pull Request - State: closed - Opened by jjzieve about 4 years ago

#24 - Feature/python3 dna report

Pull Request - State: closed - Opened by jjzieve about 4 years ago

#23 - Add unit tests

Issue - State: open - Opened by jjzieve about 4 years ago

#22 - Toggle to remove loci that have been zeroed out in cluster file from DNA summary report

Issue - State: open - Opened by jjzieve about 4 years ago

#22 - Toggle to remove loci that have been zeroed out in cluster file from DNA summary report

Issue - State: open - Opened by jjzieve about 4 years ago

#21 - Need further clarifications on the return values of GenotypeCalls.py module

Issue - State: open - Opened by plusmid over 4 years ago - 3 comments

#20 - GTC file version 3 can't output B allele frequencies and logr

Issue - State: open - Opened by Liiiii2101 about 5 years ago - 8 comments

#19 - File specification for cluster files

Issue - State: open - Opened by brettvanderwerff about 5 years ago

#18 - Added support for Top Alleles, added more report options

Pull Request - State: open - Opened by mjung2019 over 5 years ago

#17 - Omni5 issue

Pull Request - State: closed - Opened by jjzieve over 5 years ago - 4 comments

#16 - Error from a call to a function from IlluminaBeadArrayFiles

Issue - State: open - Opened by mirrorlake999 over 5 years ago - 7 comments

#16 - Error from a call to a function from IlluminaBeadArrayFiles

Issue - State: open - Opened by mirrorlake999 over 5 years ago - 7 comments

#15 - Illumina strand from manifest

Issue - State: open - Opened by kaylahardwick almost 6 years ago - 2 comments

#14 - Small difference observed in the normalized X and Y signals between GenomeStudio vs Illumina:BeadArrayFiles

Issue - State: closed - Opened by Gerbenvandervries about 6 years ago - 5 comments

#13 - Upped to version 1.3.3.

Pull Request - State: closed - Opened by basickler almost 7 years ago - 1 comment

#12 - Merge development into Master

Pull Request - State: closed - Opened by basickler almost 7 years ago - 2 comments

#11 - gtc_final_report.py

Issue - State: closed - Opened by smuchakiel about 7 years ago - 7 comments

#10 - Change the order of checking the arguments in the example code. (develop)

Pull Request - State: closed - Opened by MinSungKing about 7 years ago - 1 comment

#9 - Change the order of checking the arguments in the example code.

Pull Request - State: closed - Opened by MinSungKing about 7 years ago - 2 comments

#8 - Merge release back to develop

Pull Request - State: closed - Opened by KelleyRyanM over 7 years ago

#7 - Check write completion

Pull Request - State: closed - Opened by KelleyRyanM over 7 years ago

#6 - Incorporate fix from ekarlins

Pull Request - State: closed - Opened by KelleyRyanM over 7 years ago - 9 comments

#5 - Sync develop with latest master

Pull Request - State: closed - Opened by KelleyRyanM over 7 years ago

#4 - Incorporating fix from ekarlins

Pull Request - State: closed - Opened by KelleyRyanM over 7 years ago

#3 - fixed zero division error in normalize_intensities

Pull Request - State: closed - Opened by ekarlins over 7 years ago - 3 comments

#2 - Determining log r ratio and b allele frequency

Issue - State: closed - Opened by palijmath almost 8 years ago - 1 comment

#1 - Weird Basecall result

Issue - State: closed - Opened by yyna almost 8 years ago - 1 comment

GitHub / illumina/beadarrayfiles issues and pull requests