illumina/akt issues and pull requests

#43 - Segmentation fault error

Issue - State: open - Opened by srbehera over 1 year ago - 2 comments

#42 - Minimise p(I=2|z=0) term a little more

Pull Request - State: open - Opened by matty234 about 2 years ago

#41 - AKT PCA....Bad genotypes

Issue - State: open - Opened by gaochengPRC over 2 years ago - 6 comments

#40 - explanation of basic resource requirements?

Issue - State: closed - Opened by chlangley over 2 years ago - 2 comments

#39 - akt mendel error

Issue - State: open - Opened by Eduardo-Auer over 2 years ago - 2 comments

#38 - documentation on changes to wgs.grch37.vcf.gz site vcf

Issue - State: open - Opened by stephenturner over 2 years ago

#37 - pca index assertion error

Issue - State: closed - Opened by croct almost 3 years ago - 2 comments

#36 - kin with unindexed bcf/vcf files

Issue - State: open - Opened by Ahhgust about 3 years ago

#35 - bump version in makefile to 0.3.3

Pull Request - State: closed - Opened by stephenturner over 3 years ago - 3 comments

#34 - resolves issue 33

Pull Request - State: closed - Opened by jaredo over 3 years ago - 2 comments

#33 - Kinship coefficient calculation inconsistent with missing data

Issue - State: closed - Opened by stephenturner over 3 years ago - 11 comments

#32 - Allow both -R/-r and -F

Pull Request - State: open - Opened by bpow over 4 years ago

#31 - Allow both -F and -r/-R to be used in `kin`

Issue - State: open - Opened by bpow over 4 years ago

#30 - Problem opening input.bcf -- No debug log

Issue - State: open - Opened by George3d6 almost 5 years ago - 7 comments

#30 - Problem opening input.bcf -- No debug log

Issue - State: open - Opened by George3d6 almost 5 years ago - 7 comments

#29 - `--freq-file` not using all available SNPs present in both study and freq-file VCF

Issue - State: open - Opened by stephenturner about 6 years ago - 5 comments

#28 - format for `--freq-file FILE`?

Issue - State: closed - Opened by stephenturner about 6 years ago - 2 comments

#27 - Bring back prune?

Issue - State: closed - Opened by bergstand about 6 years ago - 1 comment

#26 - makefile fix

Pull Request - State: closed - Opened by jaredo over 6 years ago - 1 comment

#25 - recent github release tarball?

Issue - State: closed - Opened by daler over 6 years ago - 4 comments

#24 - Rps

Pull Request - State: closed - Opened by jaredo about 7 years ago

#23 - ibd options

Issue - State: closed - Opened by AntilMB about 7 years ago - 1 comment

#22 - Pedphase

Pull Request - State: closed - Opened by jaredo about 7 years ago

#21 - akt pedphase

Pull Request - State: closed - Opened by jaredo over 7 years ago

#20 - added htslib-1.5

Pull Request - State: closed - Opened by jaredo over 7 years ago

#19 - move unrelated individual search to its own`unrelated` function

Pull Request - State: closed - Opened by jaredo over 7 years ago

#18 - Bad genotypes at ...?

Issue - State: closed - Opened by IanCodes over 7 years ago - 3 comments

#17 - assume homref flag

Pull Request - State: closed - Opened by jaredo over 7 years ago

#16 - Error on suse11.1

Issue - State: closed - Opened by colindaven over 7 years ago - 2 comments

#15 - akt pca error : Failed to read the regions: pca.bcf

Issue - State: closed - Opened by eddip almost 8 years ago - 7 comments

#14 - Problem opening input file.

Issue - State: closed - Opened by eddip almost 8 years ago - 3 comments

#13 - Typo

Pull Request - State: closed - Opened by thierrygosselin almost 8 years ago

#12 - Doc update

Pull Request - State: closed - Opened by jaredo over 8 years ago

#11 - Rsvd

Pull Request - State: closed - Opened by jaredo over 8 years ago

#10 - Doc cleanup

Pull Request - State: closed - Opened by jaredo over 8 years ago

#9 - kin refactoring

Pull Request - State: closed - Opened by jaredo over 8 years ago

#8 - refactoring of kin

Pull Request - State: closed - Opened by jaredo over 8 years ago - 6 comments

#7 - update docs

Issue - State: closed - Opened by rudyarthur over 8 years ago - 1 comment

#6 - new kinship matrices

Issue - State: closed - Opened by jaredo over 8 years ago - 15 comments

#5 - Jared

Pull Request - State: closed - Opened by jaredo over 8 years ago

#4 - Metafreq

Pull Request - State: closed - Opened by rudyarthur over 8 years ago - 1 comment

#3 - Jared

Pull Request - State: closed - Opened by jaredo over 8 years ago

#2 - Added option to output singular values

Pull Request - State: closed - Opened by rudyarthur over 8 years ago

#1 - won't compile on OSX

Issue - State: closed - Opened by jaredo over 8 years ago - 1 comment

GitHub / illumina/akt issues and pull requests