ilastik/ilastik issues and pull requests

#2944 - Implement Ilastik code into another python code?

Issue - State: open - Opened by Etzila 8 days ago

#2943 - Fix tracking export plugins

Pull Request - State: open - Opened by k-dominik 9 days ago - 1 comment

#2942 - Object Classification: warn if feature plugin not available on load

Issue - State: open - Opened by k-dominik 9 days ago

#2941 - bump vigra to 1.11.1 build 1038

Pull Request - State: closed - Opened by k-dominik 11 days ago - 4 comments

#2940 - OME-Zarr: Support reading from URIs with s3: scheme

Pull Request - State: open - Opened by btbest 15 days ago - 3 comments

#2939 - OME-Zarr: Report v0.5 not supported

Pull Request - State: closed - Opened by btbest 16 days ago - 2 comments

#2938 - Tests: disable automatic cache cleanup for lazyflow tests.

Pull Request - State: closed - Opened by k-dominik 16 days ago - 4 comments

#2937 - Fix persisting NotificationsWindow during test runs

Pull Request - State: closed - Opened by k-dominik 18 days ago - 1 comment

#2936 - Export the names of the segments with the .npy file?

Issue - State: open - Opened by Etzila 18 days ago - 5 comments

#2935 - Switch to .conda package format (with latest conda build)

Pull Request - State: closed - Opened by k-dominik 19 days ago - 2 comments

#2934 - Multicut: Fix deprecated append on pd.DataFrame

Pull Request - State: closed - Opened by k-dominik 29 days ago - 2 comments

#2933 - Multicut: Multilane edge training broken

Issue - State: closed - Opened by k-dominik 29 days ago

#2932 - NOMERGE/DEBUG: win ci

Pull Request - State: closed - Opened by k-dominik 29 days ago - 1 comment

#2931 - Bug Report: Ilastik Multicut Protocol Crashes During Training

Issue - State: open - Opened by PaulaLlanos 2 months ago - 3 comments

#2930 - Failed installing ilastik using environment.yml through conda, missing dpct

Issue - State: open - Opened by AliceAlmazan 2 months ago - 3 comments

#2929 - Fix our export filenames - Export source should not be added with spaces to the file name

Issue - State: open - Opened by k-dominik 3 months ago
Labels: data-export

#2928 - Add logging widget to status bar

Pull Request - State: closed - Opened by k-dominik 3 months ago - 2 comments

#2927 - Fix pytorch fbgemm.dll dependency issue

Pull Request - State: closed - Opened by btbest 3 months ago - 12 comments

#2926 - Can't open ilastik in Application (MacOS), error message "macOS cannot verify that this app is free from malware"

Issue - State: closed - Opened by AliceAlmazan 3 months ago - 2 comments

#2925 - MultiscaleDatasetBrowser accepts URIs that the backend cannot handle

Issue - State: open - Opened by btbest 3 months ago

#2924 - OME-Zarr export: Fix export when source dataset is OME-Zarr v0.1

Pull Request - State: closed - Opened by btbest 4 months ago - 4 comments

#2923 - Multiscale: Preview scale file size in dropdown

Pull Request - State: closed - Opened by btbest 4 months ago - 9 comments

#2922 - Investigate problems with pytorch on windows for 2.4.0, 2.4.1, 2.5.0

Issue - State: open - Opened by k-dominik 4 months ago
Labels: os:windows, dependencies

#2921 - Add object classification for label images

Pull Request - State: open - Opened by k-dominik 4 months ago - 2 comments

#2920 - View Training Image RGB Channels Separately during Pixel Classification Training

Issue - State: open - Opened by regarry 4 months ago - 3 comments
Labels: enhancement, gui, user-request, volumina

#2919 - Update ilastik with the new bioimageio v0.5 spec

Pull Request - State: closed - Opened by thodkatz 4 months ago - 2 comments

#2918 - Cannot stack .h5 files with single dataset if those datasets do not have the same name

Issue - State: open - Opened by FynnBe 4 months ago

#2917 - Stacking of .tiff and .h5 does not work

Issue - State: open - Opened by FynnBe 4 months ago - 1 comment

#2916 - Export offers unsupported format options `xv` and `exr`

Issue - State: open - Opened by btbest 4 months ago

#2915 - Removed unused `SerialHdf5BlockSlot`

Pull Request - State: closed - Opened by k-dominik 4 months ago - 1 comment

#2914 - remove faulthandler activation on lazyflow import

Pull Request - State: closed - Opened by k-dominik 4 months ago - 2 comments

#2913 - Calling napari.experimental.api.from_project_file from a napari plugin

Issue - State: closed - Opened by ajitpj 4 months ago - 1 comment

#2912 - Carving: Disable mesh export for 2D and improve responsiveness

Pull Request - State: closed - Opened by btbest 4 months ago - 7 comments

#2907 - Export to OME-Zarr

Pull Request - State: closed - Opened by btbest 5 months ago - 10 comments

#2899 - Add preferences dialog

Pull Request - State: open - Opened by k-dominik 6 months ago - 1 comment

#2897 - Support selecting/loading arbitrary URIs within an OME-Zarr store

Pull Request - State: closed - Opened by btbest 6 months ago - 3 comments

#2893 - `TestObjectClassificationGui` got flaky

Issue - State: closed - Opened by k-dominik 6 months ago - 1 comment
Labels: objectClassification, testing

#2886 - Spammy gui warnings in console

Issue - State: open - Opened by btbest 7 months ago - 7 comments

#2854 - Add Object Classification from label image workflow

Pull Request - State: closed - Opened by k-dominik 9 months ago - 3 comments

#2800 - updates for tifffile, vigra, pytorch

Pull Request - State: closed - Opened by k-dominik about 1 year ago - 1 comment

#2717 - add "clear log" functionality

Issue - State: closed - Opened by k-dominik over 1 year ago - 7 comments
Labels: feature-request

#2540 - investigate flaky TestOpSlicedBlockedArrayCache.testCompressed on github ci

Issue - State: closed - Opened by k-dominik almost 3 years ago

#2522 - Cannot mark edges red in multicut workflow

Issue - State: closed - Opened by constantinpape about 3 years ago - 4 comments

#2347 - Rotate and/or delete old logs

Issue - State: closed - Opened by emilmelnikov about 4 years ago - 2 comments

#2304 - better default values for tracking size filter setting

Issue - State: closed - Opened by k-dominik over 4 years ago - 1 comment
Labels: tracking

#2131 - Carving: No mesh export on 2D data

Issue - State: closed - Opened by k-dominik over 5 years ago
Labels: carving

#1860 - KeyError in cacheMemoryManager.py in 1.3.2b3

Issue - State: closed - Opened by snajder-r over 6 years ago - 3 comments

#1835 - Error when setting multicut edges to visible before updating

Issue - State: closed - Opened by snajder-r over 6 years ago - 1 comment
Labels: bug, multicut

#1711 - object classification export fail (uint16 input image)

Issue - State: closed - Opened by Steffen-Wolf almost 7 years ago - 2 comments

#100 - Need ability to specify different sigma value for z

Issue - State: open - Opened by jni about 12 years ago - 9 comments
Labels: enhancement, gui, user-request

#99 - SerialListSlot requires hdf5 version 1.8.7 or newer

Issue - State: closed - Opened by kemaleren about 12 years ago - 7 comments

#98 - division by zero when saving new project

Issue - State: closed - Opened by kemaleren about 12 years ago - 1 comment
Labels: bug, pixelClassification

#97 - Correct segmentation layer behavior

Issue - State: closed - Opened by stuarteberg about 12 years ago - 1 comment
Labels: pixelClassification

#96 - Label class list widget improvements

Issue - State: closed - Opened by stuarteberg about 12 years ago - 3 comments
Labels: gui

#95 - shell: When importing from 0.5, copy the data, don't link to the old project file.

Issue - State: closed - Opened by stuarteberg about 12 years ago

#94 - Exception when erasing or deleting last label

Issue - State: closed - Opened by kemaleren about 12 years ago - 1 comment
Labels: bug, pixelClassification

#93 - Feature computation fails for 2d+t data

Issue - State: closed - Opened by martinsch about 12 years ago - 3 comments
Labels: bug, pixelClassification

#92 - Label strokes persist after deleting labels

Issue - State: closed - Opened by kemaleren about 12 years ago - 1 comment
Labels: bug, pixelClassification

#91 - Clicking "full volume predict" twice makes predictions disappear

Issue - State: closed - Opened by kemaleren about 12 years ago - 1 comment
Labels: bug, pixelClassification

#90 - Spurious 'unsaved work' warning

Issue - State: closed - Opened by kemaleren about 12 years ago

#89 - Carving: integration of uncertainties

Issue - State: closed - Opened by cstraehl about 12 years ago - 1 comment
Labels: carving

#88 - Carving: Integrate preprocessing into GUI

Issue - State: closed - Opened by cstraehl about 12 years ago
Labels: carving

#87 - Hintlayer

Pull Request - State: closed - Opened by LimpingTwerp about 12 years ago

#86 - Carving: Fetching labels from the labeling operator is too slow

Issue - State: closed - Opened by thorbenk about 12 years ago - 2 comments
Labels: carving

#85 - added hintlayeroption

Pull Request - State: closed - Opened by LimpingTwerp about 12 years ago

#84 - Tracking: Display parameter explanations in tooltips

Issue - State: closed - Opened by martinsch about 12 years ago - 1 comment
Labels: tracking

#83 - Tracking: Serialization

Issue - State: closed - Opened by martinsch about 12 years ago - 2 comments
Labels: tracking

#82 - Tracking: Code refactoring

Issue - State: closed - Opened by martinsch about 12 years ago - 1 comment
Labels: tracking

#81 - Tracking: Integrate raw data layer

Issue - State: closed - Opened by martinsch about 12 years ago - 1 comment
Labels: tracking

#80 - Tracking: Allow the workflow to track non-dividing objects

Issue - State: closed - Opened by martinsch about 12 years ago - 2 comments
Labels: tracking

#79 - Tracking: Check tracking input data and display error message if it isn't of the expected format

Issue - State: closed - Opened by martinsch about 12 years ago - 1 comment
Labels: tracking

#78 - Tracking: Integrate temporal features into PixelClassification workflow

Issue - State: closed - Opened by martinsch about 12 years ago - 1 comment
Labels: pixelClassification, tracking

#77 - Tracking: Write unit tests and merge to master

Issue - State: closed - Opened by martinsch about 12 years ago
Labels: tracking

#76 - Tracking: Test on other data

Issue - State: closed - Opened by martinsch about 12 years ago
Labels: tracking

#75 - Multi-Input data selection applet

Issue - State: closed - Opened by martinsch about 12 years ago
Labels: infrastructure

#74 - Project saving does not work

Issue - State: closed - Opened by cstraehl about 12 years ago - 3 comments

#73 - Review and close/migrate ilastik 0.6 issues from ilastik-0.5 repo.

Issue - State: closed - Opened by stuarteberg about 12 years ago - 1 comment

#72 - Multivariate thresholding applet

Issue - State: open - Opened by stuarteberg about 12 years ago - 1 comment

#71 - Full Unicode support

Issue - State: closed - Opened by stuarteberg about 12 years ago - 4 comments
Labels: awaiting_input

#70 - Selecting "Save Project" trains classifier.

Issue - State: closed - Opened by stuarteberg about 12 years ago - 2 comments
Labels: bug, pixelClassification

#69 - Global overlay registry

Issue - State: open - Opened by stuarteberg about 12 years ago
Labels: enhancement, infrastructure

#68 - Carving preprocessing step needs GUI control

Issue - State: closed - Opened by stuarteberg about 12 years ago - 1 comment
Labels: enhancement, carving

#67 - Carving shortcuts should use ShortcutManager.

Issue - State: closed - Opened by stuarteberg about 12 years ago
Labels: bug, carving

#66 - Minor GUI layout and naming improvements

Issue - State: closed - Opened by stuarteberg about 12 years ago
Labels: enhancement, gui

#65 - Labels names should be saved to the project file

Issue - State: closed - Opened by stuarteberg about 12 years ago - 1 comment
Labels: bug

#64 - FeatureSelection: Need visual indicator of feature scale

Issue - State: open - Opened by stuarteberg about 12 years ago - 2 comments
Labels: enhancement, gui

#63 - Need GUI benchmark tests

Issue - State: open - Opened by stuarteberg about 12 years ago - 1 comment
Labels: infrastructure

#62 - Viewer Applet "View" menu shortcuts should use ShortcutManager

Issue - State: closed - Opened by stuarteberg about 12 years ago - 1 comment
Labels: enhancement

#61 - Slicing Views should show old data (not white tiles) while pie-charts are shown.

Issue - State: closed - Opened by stuarteberg about 12 years ago - 1 comment
Labels: bug

#60 - Travis-CI tests aren't working

Issue - State: closed - Opened by stuarteberg about 12 years ago - 2 comments
Labels: bug, infrastructure

#59 - Keyboard Shortcut settings window layout needs improvement

Issue - State: closed - Opened by stuarteberg about 12 years ago - 1 comment
Labels: enhancement

#58 - PreferencesManager should use QSettings for platform idiomatic storage locations.

Issue - State: closed - Opened by stuarteberg about 12 years ago - 3 comments
Labels: enhancement

#57 - Strange scrolling bug in labeling applet drawer

Issue - State: closed - Opened by stuarteberg about 12 years ago - 3 comments
Labels: bug

#56 - Sync slicing position across applets

Issue - State: open - Opened by stuarteberg about 12 years ago
Labels: enhancement, refactor

#55 - Needs More Testing: Export Layer context menu item

Issue - State: closed - Opened by stuarteberg about 12 years ago - 8 comments
Labels: infrastructure

GitHub / ilastik/ilastik issues and pull requests