ihmwg/python-ihm issues and pull requests

#55 - Segment for StartingModel is incorrect

Issue - State: closed - Opened by benmwebb over 4 years ago

#54 - Adapt to modification in FLR dictionary

Pull Request - State: closed - Opened by CAHanke over 4 years ago

#53 - Handle non-ASCII mmCIF files with C parser

Issue - State: closed - Opened by benmwebb over 4 years ago

#52 - Unable to get model object for 39th and 40th entries

Issue - State: closed - Opened by saijananiganesan over 4 years ago - 2 comments

#51 - Add support for SWISS-MODEL to PDB parser

Issue - State: closed - Opened by benmwebb almost 5 years ago
Labels: enhancement

#50 - Change ChemDescriptor to ChemComp for flr_poly_probe_position_mutated

Pull Request - State: closed - Opened by CAHanke almost 5 years ago - 1 comment

#49 - Extend _all_flr_chemical_descriptors for lifetime-based analyses in flr.py

Pull Request - State: closed - Opened by CAHanke almost 5 years ago - 2 comments

#48 - Read dictionary version into System

Issue - State: closed - Opened by benmwebb about 5 years ago
Labels: enhancement

#47 - Adapt to modifications in FLR dictionary

Pull Request - State: closed - Opened by CAHanke about 5 years ago - 1 comment

#46 - Allow passing Residue objects to ResidueFeature

Issue - State: closed - Opened by benmwebb about 5 years ago
Labels: enhancement

#45 - IDmapper for assemblies does not work for some PDB-dev entries

Issue - State: closed - Opened by saijananiganesan over 5 years ago - 3 comments

#44 - Don't allow Entities in Assemblies

Issue - State: closed - Opened by benmwebb over 5 years ago
Labels: bug

#43 - Support features defined on entities, not asyms

Issue - State: closed - Opened by benmwebb over 5 years ago
Labels: bug

#42 - bool(ihm.unknown) should return False

Issue - State: closed - Opened by benmwebb over 5 years ago

#41 - Change _ihm_chemical_descriptor to _ihm_chemical_component_descriptor in dumper.py

Issue - State: closed - Opened by CAHanke over 5 years ago - 2 comments

#40 - Add FLR classes for fluorescence experiments

Pull Request - State: closed - Opened by CAHanke over 5 years ago

#39 - Use special object for values marked as ?

Issue - State: closed - Opened by benmwebb over 5 years ago
Labels: enhancement

#38 - Read starting model coordinates

Issue - State: closed - Opened by benmwebb over 5 years ago
Labels: enhancement

#37 - Add support for predicted contact restraints

Issue - State: closed - Opened by benmwebb over 5 years ago
Labels: enhancement

#36 - Add warnings if reader encounters unknown categories or items

Issue - State: closed - Opened by benmwebb over 5 years ago
Labels: enhancement

#35 - Broken URL in example script

Issue - State: closed - Opened by shruthivis over 5 years ago - 1 comment

#34 - Avoid hitting the network in MRCParser

Issue - State: closed - Opened by benmwebb over 5 years ago
Labels: bug

#33 - Extend _entity.src_method to accept values allowed in the PDBx/mmCIF dictionary

Issue - State: closed - Opened by brindakv over 5 years ago - 1 comment
Labels: enhancement

#32 - TypeError attempting to read PDB 6ep0

Issue - State: closed - Opened by benmwebb over 5 years ago
Labels: bug

#31 - Add a new mmCIF-compatible binary format, e.g. for trajectories

Issue - State: open - Opened by benmwebb almost 6 years ago - 4 comments
Labels: enhancement

#30 - Allow adding extra user-defined categories

Issue - State: closed - Opened by benmwebb almost 6 years ago
Labels: enhancement

#29 - Add faster C API for reading loop constructs

Issue - State: open - Opened by benmwebb almost 6 years ago
Labels: enhancement

#28 - Add support for pseudo atoms

Issue - State: closed - Opened by benmwebb almost 6 years ago
Labels: enhancement

#27 - Representation does not have to be a strict subset of assembly

Issue - State: closed - Opened by benmwebb almost 6 years ago
Labels: bug

#26 - Add group_id to derived_distance_restraints

Issue - State: closed - Opened by mtrellet about 6 years ago - 1 comment
Labels: enhancement

#25 - Add support for audit_conform category

Issue - State: closed - Opened by brindakv about 6 years ago
Labels: enhancement

#24 - Verify Atom/Sphere against Representation type

Issue - State: closed - Opened by benmwebb about 6 years ago
Labels: enhancement

#23 - Provide an example for using nonstandard/modified residues

Issue - State: closed - Opened by benmwebb about 6 years ago - 1 comment
Labels: enhancement

#22 - Change PolyResidueFeature type to 'residue' when a unique residue is provided

Issue - State: closed - Opened by mtrellet about 6 years ago
Labels: enhancement

#21 - Allows for non-polymer atoms in Entity declaration

Issue - State: closed - Opened by mtrellet about 6 years ago - 2 comments
Labels: enhancement

#20 - Report an error if no fits are provided for a restraint

Issue - State: open - Opened by benmwebb about 6 years ago
Labels: enhancement

#19 - Should verify seq_ids in spheres/atoms against representation & assembly

Issue - State: closed - Opened by benmwebb over 6 years ago
Labels: bug

#17 - Prohibit or warn about non-ascii characters in strings

Issue - State: closed - Opened by benmwebb over 6 years ago - 1 comment
Labels: bug

#16 - Add support for pdbx_nonpoly_scheme table

Issue - State: closed - Opened by benmwebb over 6 years ago

#11 - Add MMTF support

Issue - State: open - Opened by benmwebb over 6 years ago - 1 comment
Labels: enhancement

GitHub / ihmwg/python-ihm issues and pull requests