igordot/msigdbr issues and pull requests

#39 - 2024 update

Issue - State: open - Opened by jeremymsimon 27 days ago

#38 - msigdbr and Org.bt.eg.db

Issue - State: closed - Opened by wangjiawen2013 2 months ago - 7 comments
Labels: question

#37 - Missing pathways in results

Issue - State: closed - Opened by emmanuel-contreras 2 months ago - 1 comment
Labels: question

#36 - misgdbr for yeast

Issue - State: closed - Opened by HamidKianGaikani 4 months ago - 2 comments
Labels: question

#35 - C2:CGP pathways being labelled as C2:CP pathways

Issue - State: closed - Opened by rauldiul 4 months ago - 1 comment
Labels: question

#34 - Help with checking a pathway in msigdb.

Issue - State: open - Opened by Chrisdoan9 4 months ago

#33 - 2023 update?

Issue - State: open - Opened by mariecrane about 1 year ago - 6 comments
Labels: question

#32 - Accessing Mouse MSigDB Collections

Issue - State: open - Opened by agdenadel over 1 year ago - 1 comment
Labels: enhancement

#31 - Run KEGG in Seurat object

Issue - State: closed - Opened by krigia over 1 year ago - 1 comment
Labels: question

#30 - Inconsistent gene set contents with MSigDB

Issue - State: closed - Opened by 10adavis over 1 year ago - 6 comments
Labels: help wanted

#29 - Problem with dyplr dependency (I think)

Issue - State: open - Opened by rebeelouise over 1 year ago - 1 comment
Labels: bug

#28 - Save the 'entrez_gene' columns in character mode

Issue - State: open - Opened by jokergoo over 1 year ago - 3 comments
Labels: enhancement

#27 - update to 2023.1.Mm and 2023.1.Hs

Pull Request - State: closed - Opened by jliu678 over 1 year ago - 1 comment

#26 - getting error

Issue - State: closed - Opened by rominaappierdo almost 2 years ago - 8 comments

#25 - First release of Mouse MSigDB (v2022.1.Mm)

Issue - State: open - Opened by thecalab almost 2 years ago - 1 comment
Labels: enhancement

#24 - number of gene sets

Issue - State: closed - Opened by coralzhang almost 2 years ago - 4 comments

#23 - extension for gs descriptions

Pull Request - State: open - Opened by ozturan almost 2 years ago

#22 - msigdb - collections expanded

Pull Request - State: closed - Opened by ozturan almost 2 years ago - 1 comment

#21 - Add functions update_GO_names, cap_names

Pull Request - State: open - Opened by TylerSagendorf over 2 years ago - 4 comments

#20 - msigdbr package, category C2, subcategory CP

Issue - State: closed - Opened by acaulier over 2 years ago - 4 comments
Labels: question

#19 - Add shorter GO descriptions?

Issue - State: open - Opened by TylerSagendorf over 2 years ago - 3 comments
Labels: enhancement

#18 - Methodology details, and `write.gmt` helper functions?

Issue - State: open - Opened by dereckdemezquita over 2 years ago - 3 comments
Labels: enhancement, question

#17 - MSigDB 7.4

Issue - State: closed - Opened by kvittingseerup over 3 years ago - 4 comments
Labels: duplicate, enhancement

#16 - Skip 7.3 CRAN release and go straight to 7.4(?)

Issue - State: closed - Opened by lianos over 3 years ago - 1 comment
Labels: enhancement

#15 - Ensembl Gene IDs

Issue - State: closed - Opened by mw55309 over 3 years ago - 3 comments
Labels: enhancement

#14 - enricher result is different from msigDB web "investigate Gene Sets"

Issue - State: closed - Opened by weiliuyuan almost 4 years ago - 2 comments
Labels: question

#13 - `unused argument (.data$species_name == species)` error

Issue - State: closed - Opened by katwre about 4 years ago - 3 comments
Labels: bug

#12 - CP:WIKIPATHWAY

Issue - State: closed - Opened by tuhulab about 4 years ago - 1 comment
Labels: question

#11 - Added values from the EXACT_SOURCE XML tag to the `sources` column

Pull Request - State: closed - Opened by smped about 4 years ago - 4 comments

#10 - Adding the "EXACT_SOURCE" column to the MsigDB C5 entries

Issue - State: closed - Opened by AdrijaK about 4 years ago - 3 comments
Labels: enhancement

#9 - Retrieve all C2 canonical pathways using option subcategory = "CP"?

Issue - State: closed - Opened by lxhuang7 almost 5 years ago - 2 comments
Labels: question

#8 - SCSig collection

Issue - State: closed - Opened by kokitsuyuzaki almost 5 years ago - 3 comments
Labels: enhancement

#7 - Archived genesets

Issue - State: closed - Opened by millerh1 about 5 years ago - 2 comments
Labels: enhancement

#6 - Update to MSIGDB

Issue - State: closed - Opened by millerh1 over 5 years ago - 1 comment
Labels: enhancement

#5 - Problem with loading several categories

Issue - State: closed - Opened by laurie-tonon over 5 years ago - 2 comments
Labels: bug, enhancement

#4 - No gene sets from KEGG, REACTOME or BIOCARTA

Issue - State: closed - Opened by enricoferrero over 5 years ago - 5 comments
Labels: question

#3 - Some orthologs are missing

Issue - State: closed - Opened by ashuchawla over 5 years ago - 3 comments
Labels: question

#2 - Fix variable name in vignette

Pull Request - State: closed - Opened by vreuter about 6 years ago - 1 comment

#1 - Function to query MSigDB database version used by msigdbr

Issue - State: closed - Opened by marcora about 6 years ago - 1 comment
Labels: question

GitHub / igordot/msigdbr issues and pull requests