icometrix/dicom2nifti issues and pull requests

#151 - Infinite loop trying to convert certain multiframe scout

Issue - State: closed - Opened by abrys 2 months ago - 1 comment
Labels: bug

#150 - OverflowError: Python integer -1024 out of bounds for uint16

Issue - State: open - Opened by clead6 3 months ago - 1 comment

#149 - --allow-inconsistent-slice-increment is not working

Issue - State: open - Opened by jdhenckel 5 months ago

#148 - Erro: module 'pydicom' has attribute 'read_file'. Version 3.0.0 broke things

Issue - State: closed - Opened by Zhack47 5 months ago - 2 comments
Labels: bug

#146 - Resampling: Ghost slices due to rounding errors

Pull Request - State: open - Opened by robertschweizer 9 months ago

#145 - Fix deprecation warning about pydicom_compat

Issue - State: open - Opened by abrys 10 months ago - 1 comment
Labels: enhancement

#144 - fix overflow error

Pull Request - State: closed - Opened by barnavoj 10 months ago - 2 comments

#143 - Segmentation disagreement between dicom2nifti and Monai when converting DICOM to NIFTI format

Issue - State: open - Opened by 23427074 10 months ago

#142 - Request: direct re-use of a result.object

Issue - State: open - Opened by Ede1994 10 months ago

#141 - How to rename the output file (e.g. 202_.nii.gz)

Issue - State: open - Opened by angolin22 11 months ago - 1 comment
Labels: help wanted

#140 - Errors when converting Canon Aquilion ONE multi-frame CT series

Issue - State: open - Opened by RasmusRPaulsen 12 months ago

#139 - 'FileDataset' object has no attribute 'PerFrameFunctionalGroupsSequence'

Issue - State: open - Opened by moonforsun 12 months ago - 1 comment

#138 - Reduce memory footprint during conversion

Issue - State: closed - Opened by abrys about 1 year ago

#137 - Is there going to be a new version for python3?

Issue - State: closed - Opened by ldelaoa about 1 year ago - 1 comment
Labels: help wanted

#135 - Crash when some Dicom tag are empty(null)

Issue - State: open - Opened by namk-fc over 1 year ago

#134 - The process will stop for some dicom images without file_meta in the header

Issue - State: open - Opened by luxunxiansheng over 1 year ago

#133 - docs: fix mistake about the sagittal and coronal axes

Pull Request - State: open - Opened by alex4men over 1 year ago

#132 - Issue working with multiple dicom series under a single folder

Issue - State: open - Opened by shrikanth95 over 1 year ago

#131 - Jupyter notebook kernel crashed when running dicom2nifti.convert_directory method

Issue - State: open - Opened by Yanglinjun1 almost 2 years ago - 1 comment

#130 - I was trying to convert the file format, but I got this error and I don't know what the reason is. But even if there is a bug, the converted image will still work, will this make any difference? Will it have an impact on image quality?

Issue - State: closed - Opened by xxd-1223 almost 2 years ago - 1 comment
Labels: help wanted

#129 - Gray scale range seems to change when using the conversion function.

Issue - State: closed - Opened by penguin1109 almost 2 years ago - 5 comments
Labels: help wanted

#128 - MP-RAGE conversion for GE wrongly assumes multiframe and fails

Issue - State: closed - Opened by IlonaLipp almost 2 years ago - 3 comments
Labels: enhancement

#127 - ConversionError: Unsupported or missing PlaneOrientationSequence for multiframe CBCT scan

Issue - State: closed - Opened by ikatechis about 2 years ago - 11 comments
Labels: enhancement

#126 - Clipping during conversion of Siemens multiframe data

Issue - State: closed - Opened by abrys about 2 years ago - 2 comments
Labels: bug

#125 - Avoid using private headers for Philips multiframe

Issue - State: closed - Opened by abrys over 2 years ago - 1 comment
Labels: enhancement

#124 - Fix AttributeError

Pull Request - State: open - Opened by ChenjieXu over 2 years ago

#123 - Possibility for Community Maintenance

Issue - State: closed - Opened by blakedewey over 2 years ago - 1 comment
Labels: question

#122 - Philips Multiframe with ADC isn't truncated appropriately

Issue - State: open - Opened by ma-tripleT over 2 years ago

#121 - Writing output_file as optional in reorient_image

Pull Request - State: open - Opened by NabJa over 2 years ago

#120 - Failure to convert more recent Philips multiframe

Issue - State: closed - Opened by abrys over 2 years ago - 1 comment
Labels: bug

#119 - Use GDCM directly instead of gdcmconv

Issue - State: closed - Opened by abrys over 2 years ago
Labels: enhancement

#118 - Support Hyperfine multiframe dicoms

Issue - State: closed - Opened by abrys over 2 years ago - 1 comment

#117 - OSError: [WinError 193] %1 n’est pas une application Win32 valide

Issue - State: closed - Opened by oscarramirezs over 2 years ago - 1 comment

#116 - Fix for Siemens mosaic origin

Issue - State: closed - Opened by abrys over 2 years ago

#115 - Support for Siemens Mosaic without MatrixSize in dicom headers

Issue - State: closed - Opened by abrys over 2 years ago

#114 - dicom_series_to_nifti with reorient_nifti=True loses 4th dimension zoom/Repetition_Time value

Issue - State: open - Opened by ruidc almost 3 years ago

#113 - Excepting/catching conversion errors instead of just logging them

Issue - State: open - Opened by mikbuch almost 3 years ago - 2 comments

#112 - Crash during certain siemens mosaic conversion

Issue - State: open - Opened by abrys almost 3 years ago - 1 comment

#111 - Refactoring Request

Pull Request - State: closed - Opened by blakedewey almost 3 years ago

#110 - Add support for multiframe siemens data

Issue - State: closed - Opened by abrys almost 3 years ago
Labels: enhancement

#109 - Converting using dicom2nifti didn't work

Issue - State: closed - Opened by Minxiangliu about 3 years ago - 1 comment

#108 - dicom2nifti.convert_directory and Error: full_block[:, :, :, index] = data_blocks[index] ValueError:

Issue - State: open - Opened by ShibaPrasad over 3 years ago - 1 comment

#107 - output files from `convert_dir`

Pull Request - State: open - Opened by casperdcl over 3 years ago - 1 comment

#106 - citation

Issue - State: open - Opened by bashirlab over 3 years ago

#105 - fix command line option inconsistent_slice_thickness

Pull Request - State: open - Opened by jdhenckel over 3 years ago - 1 comment

#104 - Incorrect bvecs for GE DTI studies with ROW phase encoding (dicom_series_to_nifti)

Issue - State: open - Opened by samshipengs over 3 years ago - 1 comment

#103 - Image rotating while converting from dicom to nifti

Issue - State: open - Opened by vikas351 over 3 years ago - 1 comment

#102 - Speed up conversion

Issue - State: open - Opened by craine over 3 years ago - 1 comment

#101 - Strange Siemens Mosaic DWI to NifTI conversion when DICOM has incorrect (0051,100B)

Issue - State: open - Opened by ma-tripleT over 3 years ago - 1 comment

#100 - Modified code for supporting processing HOPPR dataset

Pull Request - State: closed - Opened by yaoli over 3 years ago

#99 - Siemens MAGNETOM Vida scanner with single dcm file does not work

Issue - State: open - Opened by RolandHam over 3 years ago - 1 comment

#98 - Unable to handle PHILIPS ultrasound images

Issue - State: open - Opened by albert-huang2020 over 3 years ago

#97 - Can you join us for a Zoom discussion on Python / DICOM / neuroimaging?

Issue - State: open - Opened by matthew-brett over 3 years ago

#96 - Dicom to Nifti affine matrix issue.

Issue - State: open - Opened by ericabg1 over 3 years ago

#95 - Basic rgb dicom conversion support

Issue - State: open - Opened by abrys over 3 years ago

#94 - Single dicom image

Issue - State: open - Opened by saro92 almost 4 years ago - 3 comments

#93 - PermissionError: [WinError 5] Access is denied

Issue - State: open - Opened by NancyFY almost 4 years ago - 2 comments

#92 - dicom2nifti conversion with dicom2nifti-2.2.12 and python3.8.0

Issue - State: closed - Opened by FredTestud almost 4 years ago - 1 comment

#91 - How to handle missing mosaic tags in Siemens dicoms

Issue - State: closed - Opened by Kai-Chen about 4 years ago - 3 comments

#90 - Missing documentation for padding

Issue - State: open - Opened by cl445 about 4 years ago - 2 comments
Labels: enhancement, help wanted

#89 - What should pass to the function sort_dicoms?

Issue - State: open - Opened by shuhaojie about 4 years ago - 3 comments
Labels: enhancement, help wanted

#88 - single slice conversion

Issue - State: closed - Opened by bkonk about 4 years ago - 3 comments
Labels: enhancement

#87 - value change to array data

Issue - State: closed - Opened by bkonk over 4 years ago - 2 comments
Labels: enhancement

#86 - dicom2nifti.exceptions.ConversionError: NOT_A_VOLUME

Issue - State: closed - Opened by SYSUMSD over 4 years ago - 3 comments
Labels: bug, enhancement, wontfix

#85 - Unable to handle images touched by dcm4che or Agfa

Issue - State: open - Opened by neurolabusc over 4 years ago - 1 comment
Labels: bug, enhancement

#84 - Something wrong...

Issue - State: open - Opened by LourisXu over 4 years ago - 1 comment

#83 - Gray levels were distortion when using dicom2nifti

Issue - State: open - Opened by Itzikwa over 4 years ago - 3 comments

#82 - xyzt_units?

Issue - State: closed - Opened by ivantarapov over 4 years ago - 1 comment
Labels: enhancement

#81 - Headers of dicom files loaded failed.

Issue - State: closed - Opened by onlie202 over 4 years ago - 1 comment

#80 - No file is produced

Issue - State: closed - Opened by wanderine over 4 years ago - 2 comments
Labels: help wanted

#79 - command line 'dicom2nifti' not working under windows

Issue - State: open - Opened by ljljlj02 over 4 years ago - 12 comments
Labels: bug

#78 - Add optional validation of instance number (in case slice increment is inconsistent)

Issue - State: closed - Opened by abrys over 4 years ago
Labels: enhancement

#77 - Resampling of inconsistent slice increment fails

Issue - State: closed - Opened by abrys over 4 years ago
Labels: bug

#76 - ValueError: negative dimensions are not allowed

Issue - State: open - Opened by shmiman almost 5 years ago

#75 - Result from convert_dicom.dicom_array_to_nifti should return the reformatted and resampled image

Issue - State: closed - Opened by abrys almost 5 years ago
Labels: bug

#74 - Exceptions should be raised not just print in console

Issue - State: closed - Opened by GJChen919 almost 5 years ago - 1 comment
Labels: wontfix

#73 - Avoid error when converting localizer/scout images

Issue - State: closed - Opened by abrys almost 5 years ago
Labels: bug, enhancement

#72 - dicom2nifti conversion error

Issue - State: open - Opened by BramshQamar almost 5 years ago

#71 - Unable to convert dicom files in a folder

Issue - State: open - Opened by amitjc almost 5 years ago

#70 - Multi-Echo MPRAGE

Issue - State: closed - Opened by erikglee almost 5 years ago - 5 comments
Labels: bug, enhancement

#69 - Nicer error handling for some situations with localizers

Issue - State: open - Opened by abrys almost 5 years ago
Labels: enhancement

#68 - allow to use dcmdjpeg instead of gdcmconv

Pull Request - State: open - Opened by vsaase about 5 years ago

#67 - Move docs to github pages

Issue - State: closed - Opened by abrys about 5 years ago
Labels: enhancement

#66 - Documentation error in dicom2nitfi.settings

Issue - State: closed - Opened by annikaliebgott about 5 years ago - 1 comment
Labels: bug

#65 - Remove python 2 support and compatibility code

Issue - State: closed - Opened by abrys about 5 years ago
Labels: enhancement

#64 - Orthogonal resampling

Issue - State: closed - Opened by ryan102590 about 5 years ago - 1 comment

#63 - AttributeError: module 'dicom2nifti' has no attribute 'convert_directory'

Issue - State: closed - Opened by yanesja over 5 years ago - 2 comments

#62 - "Squeeze" empty dimensions

Issue - State: closed - Opened by abrys over 5 years ago
Labels: enhancement

#61 - Reduce memory needs of dicom2nifti

Issue - State: closed - Opened by abrys over 5 years ago

#60 - Failing conversion if GE series contains localizer

Issue - State: closed - Opened by abrys over 5 years ago - 1 comment

#59 - Possible bug in RepetitionTime tag check

Pull Request - State: closed - Opened by meliascosta over 5 years ago - 1 comment

#58 - Add support for inconsistent slice increments

Issue - State: closed - Opened by abrys almost 6 years ago
Labels: enhancement

#57 - Uncompressed nifti output

Issue - State: closed - Opened by burns101 almost 6 years ago - 1 comment
Labels: help wanted

#56 - Resampling?

Issue - State: closed - Opened by ujjwalbaid0408 about 6 years ago - 1 comment
Labels: help wanted

#55 - Address numpy.matrix deprecation

Issue - State: closed - Opened by topspinj about 6 years ago
Labels: enhancement

#54 - icometrix/dicom2nifti#53: Fix regex DeprecationWarning

Pull Request - State: closed - Opened by topspinj about 6 years ago - 1 comment

#53 - DeprecationWarning: invalid escape sequence \s

Issue - State: closed - Opened by topspinj about 6 years ago

#52 - Is it possible to convert straight to .nii instead of .nii.gz?

Issue - State: closed - Opened by TheGormlessGit about 6 years ago - 4 comments
Labels: enhancement, help wanted

#51 - Hanging gantry tilt resampling

Issue - State: closed - Opened by abrys about 6 years ago
Labels: bug

#50 - Looping through different dicom folder

Issue - State: closed - Opened by abhinandanbatra about 6 years ago - 2 comments
Labels: help wanted

GitHub / icometrix/dicom2nifti issues and pull requests