Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / icgc-dcc/egasub issues and pull requests

#88 - update github tag "ega" to "ega-archive"

Issue - State: open - Opened by juleskers over 5 years ago - 1 comment

#87 - Log file bug, also fixed the failing travis CI testing

Pull Request - State: closed - Opened by junjun-zhang over 6 years ago

#86 - Description added to dataset

Pull Request - State: closed - Opened by baminou over 6 years ago

#85 - Missing dataset description

Issue - State: closed - Opened by hknahal over 6 years ago - 1 comment

#84 - EGASub does not allow dot character in submission directory name

Issue - State: closed - Opened by hknahal almost 7 years ago - 1 comment

#83 - error running egasub : can not get ICGC ID

Issue - State: closed - Opened by lheisler about 7 years ago - 7 comments

#82 - running egasub on xfer.res.oicr.on.ca

Issue - State: open - Opened by lheisler about 7 years ago

#81 - Local testing

Pull Request - State: closed - Opened by Chen2x over 7 years ago - 1 comment

#80 - This time should be ok

Pull Request - State: closed - Opened by Chen2x over 7 years ago - 1 comment

#79 - fixed previous tests

Pull Request - State: closed - Opened by Chen2x over 7 years ago - 1 comment

#78 - testing update

Pull Request - State: closed - Opened by Chen2x over 7 years ago

#77 - Update test_ega_enums.py

Pull Request - State: closed - Opened by Chen2x over 7 years ago - 2 comments

#76 - Testing

Pull Request - State: closed - Opened by junjun-zhang over 7 years ago - 16 comments

#75 - Dataset description

Issue - State: open - Opened by lheisler over 7 years ago

#73 - consistent command line usage for dataset submission

Issue - State: open - Opened by lheisler over 7 years ago

#72 - specify location of files on EGA staging server

Issue - State: open - Opened by lheisler over 7 years ago

#71 - Aligned lane level

Pull Request - State: closed - Opened by junjun-zhang over 7 years ago - 1 comment

#70 - Analysis objects, submitting multiple bam files

Issue - State: closed - Opened by lheisler over 7 years ago - 2 comments
Labels: enhancement

#69 - added Coverage Status, we are at 45% test coverage right now, need im…

Pull Request - State: closed - Opened by junjun-zhang over 7 years ago - 1 comment

#68 - EGA accession id added to the log files

Pull Request - State: closed - Opened by baminou over 7 years ago - 2 comments

#67 - Allow additional information be provided as tag-value pairs via 'attributes'

Issue - State: open - Opened by lheisler over 7 years ago - 1 comment
Labels: feature request

#66 - submission receipt with EGA accessions

Issue - State: closed - Opened by lheisler over 7 years ago - 3 comments
Labels: feature request

#65 - Neccessity of running dry_run prior to submission

Issue - State: open - Opened by lheisler over 7 years ago
Labels: feature request

#64 - Allow previously submitted samples to bypass local validation

Issue - State: open - Opened by lheisler over 7 years ago
Labels: feature request

#63 - Add a Codacy badge to README.md

Pull Request - State: closed - Opened by codacy-badger almost 8 years ago

#62 - Try to fix some whitespaces

Pull Request - State: closed - Opened by baminou almost 8 years ago

#61 - fixed a bug and enhanced dataset submission

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#60 - Test implementation

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#59 - Code style fix

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#58 - PNG is blurry, SVG is nice and crisp.

Pull Request - State: closed - Opened by andricDu almost 8 years ago - 1 comment

#57 - Little fix of whitespaces

Pull Request - State: closed - Opened by baminou almost 8 years ago - 1 comment

#56 - Test alignment

Pull Request - State: closed - Opened by baminou almost 8 years ago

#55 - Feat/better err message

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#54 - add icgc project code in created dataset as attributes

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#53 - added dataset clean up when using dry_run

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#52 - added pre-condition check before performing submit

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#51 - merge to master

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#50 - add back cleanup for dry_run otherwise it is not DRY run; other fixes

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#49 - 0.1.0rc4

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#48 - Prompt lists prettified

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#47 - validate submission folder name when 'new' it

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#46 - change from delete to update for objects created by dry_run

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#45 - v0.1.0rc3

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#44 - a lot of improvement in validation

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#43 - removed pip dependency in setup

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#42 - 'alias' can not include special characters

Issue - State: closed - Opened by junjun-zhang almost 8 years ago - 1 comment

#41 - Release candidate 1 for v0.1.0

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#40 - skip getting icgc id for dry run

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#39 - Feat/more validation

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#38 - Corrections added to the log file check

Pull Request - State: closed - Opened by baminou almost 8 years ago

#37 - Fix/readme update

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#36 - adjust to use different id service when in dry_run mode

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#35 - dataset submission works now

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#34 - Fix/metadata template

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#33 - minor fixes

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#32 - v0.1.0 release candidate 1

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#31 - Submission supports alignment and variation now

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#30 - Merge submittable_tests into alignment-variation branch

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#29 - Dataset command

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#28 - Ega service reorg

Pull Request - State: closed - Opened by baminou almost 8 years ago

#27 - Check with existing project for the project code in the initialization.

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#26 - Logging and --debug implemented to the system

Pull Request - State: closed - Opened by baminou almost 8 years ago

#25 - Ftp file validation

Pull Request - State: closed - Opened by baminou almost 8 years ago

#24 - Setup fixed

Pull Request - State: closed - Opened by baminou almost 8 years ago

#23 - minor edit to error message

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#22 - Minor modifications added to some files

Pull Request - State: closed - Opened by baminou almost 8 years ago

#21 - New template function

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#20 - Tests for login, logout, prepare, and submit_obj functions

Pull Request - State: closed - Opened by baminou almost 8 years ago

#19 - Fields local validation

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#17 - Alignment analysis submit implementation

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#16 - Login function test

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago - 1 comment

#15 - added analysis.yaml for testing alignment submission

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#14 - Login function test

Pull Request - State: closed - Opened by baminou almost 8 years ago

#13 - Ega sample status

Pull Request - State: closed - Opened by baminou almost 8 years ago

#12 - Validation for sample added to the submit function

Pull Request - State: closed - Opened by baminou almost 8 years ago - 1 comment

#10 - added test workspace with data submissions

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago - 2 comments

#9 - fast forward submission branch

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#8 - Init implementation

Pull Request - State: closed - Opened by baminou almost 8 years ago

#7 - Aliases added to the entities

Pull Request - State: closed - Opened by baminou almost 8 years ago

#6 - added ICGC data access policy xml

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#5 - Contact class added and test fixed for DAC

Pull Request - State: closed - Opened by baminou almost 8 years ago

#4 - Icgc id service

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#3 - EGA object classes and their tests done by Brice

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago - 1 comment

#2 - minor changes

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago

#1 - add travis status in README

Pull Request - State: closed - Opened by junjun-zhang almost 8 years ago