icgc-argo/wfpm issues and pull requests

#67 - Update readme

Pull Request - State: closed - Opened by edsu7 11 months ago - 2 comments

#66 - Readme

Pull Request - State: closed - Opened by junjun-zhang over 2 years ago

#65 - older version of git common causes false alarm about branch not clean

Issue - State: closed - Opened by junjun-zhang almost 3 years ago - 1 comment

#64 - a couple of fixes

Pull Request - State: closed - Opened by junjun-zhang almost 3 years ago

#63 - Bug: parse out version string properly in scripts

Issue - State: closed - Opened by junjun-zhang almost 3 years ago - 1 comment

#62 - perform clean up when `wfpm nextver` failed unexpectedly

Issue - State: closed - Opened by junjun-zhang almost 3 years ago - 1 comment

#61 - Enhancement: in a release, bundle package and test data separately in different tarballs

Issue - State: closed - Opened by junjun-zhang almost 3 years ago

#60 - `wfpm install` should delete old dependencies

Issue - State: closed - Opened by abenjak almost 3 years ago

#59 - 🐛 `wfpm install` does not install the dependencies as expected when modifications are made to the `pkg.json` after `new`

Issue - State: closed - Opened by lindaxiang about 3 years ago - 4 comments

#58 - update init and doc to address #55

Pull Request - State: closed - Opened by junjun-zhang about 3 years ago

#57 - Package validation

Pull Request - State: closed - Opened by junjun-zhang about 3 years ago

#56 - add package uri in the release note

Issue - State: closed - Opened by junjun-zhang about 3 years ago - 1 comment

#55 - Documentation enhancement - wfpm init

Issue - State: closed - Opened by lindaxiang about 3 years ago - 2 comments

#54 - Feature request: support private git repo and contain image

Issue - State: closed - Opened by junjun-zhang about 3 years ago - 1 comment

#53 - added singularity image file extensions to gitignore

Pull Request - State: closed - Opened by junjun-zhang about 3 years ago

#52 - Feature request: trigger package releasing process from wfpm cli

Issue - State: closed - Opened by junjun-zhang about 3 years ago

#51 - Enhancement: package validation to include check to ensure dependencies are installed

Issue - State: closed - Opened by junjun-zhang about 3 years ago - 1 comment

#50 - Feature Request - Automatically change the visibility of the github docker images to public

Issue - State: closed - Opened by lindaxiang about 3 years ago

#49 - Convert an existing git repo to `wfpm` package repo

Issue - State: closed - Opened by lindaxiang about 3 years ago

#48 - Feature Request: Add singularity images to .gitignore

Issue - State: closed - Opened by abenjak about 3 years ago - 1 comment

#47 - when on a package develpment branch, prevent changing files not beloning to the package

Issue - State: closed - Opened by junjun-zhang about 3 years ago
Labels: enhancement

#46 - sync up `container` and `default_container_registry` values in workflow script pkg.json

Issue - State: closed - Opened by junjun-zhang over 3 years ago
Labels: enhancement

#45 - support building docker image locally for testing

Issue - State: closed - Opened by junjun-zhang over 3 years ago

#44 - Pkg validation

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#43 - Fix minor typo

Pull Request - State: closed - Opened by aferriz over 3 years ago

#42 - update version in checker for nextver command

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#41 - Add support for Singularity

Issue - State: closed - Opened by junjun-zhang over 3 years ago

#40 - Fix minor typo

Pull Request - State: closed - Opened by aferriz over 3 years ago

#39 - Feature request: cleanup installed by unused dependent package versions

Issue - State: closed - Opened by junjun-zhang over 3 years ago

#38 - Bug report: when variable `version` exists in `checker.nf`, it should be updated to sync up with that of the main script

Issue - State: closed - Opened by junjun-zhang over 3 years ago - 1 comment
Labels: bug

#37 - Automatically check correctness of tool package information

Issue - State: closed - Opened by akahles over 3 years ago - 3 comments
Labels: new-feature

#36 - new feature: add support for importing dependency of in-development package

Issue - State: closed - Opened by junjun-zhang over 3 years ago

#35 - deal with branch/tag names not sortable by verString

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#34 - Some improvements

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#33 - allow not to specify any dependencies when creating a new workflow package

Issue - State: closed - Opened by junjun-zhang over 3 years ago - 1 comment

#32 - added concepts and usage doc pages, removed unneeded ignore files

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#31 - minor fix to checker templates

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#30 - handle base image that is not fastqc

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#29 - Improvements

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#28 - added anonymous workflow in main script so it can be run directly

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#27 - Demo utils up

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#26 - Quick fix

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#25 - added logger in project object, in prep for more detailed logging

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#24 - change how default container registry is set, eliminate cmds deps on ctx

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#23 - Starter template

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#22 - Update diagram

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#21 - first pass implementation of nextver cmd

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#20 - Enhancements

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#19 - Workon cmd

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#18 - added tests for creating workflow using subworkflow

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#17 - remove not much needed Config, add Git

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#16 - Update doc

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#15 - Input validation

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#14 - Improved import

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#13 - switch to questionary to collect user inputs, open opp to fine valida…

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#12 - Improvements

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#11 - Git readiness

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#10 - refactor, cleaner org, project object is much more useful

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#9 - improved tool template with support for multiple container registries

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#8 - Dependency

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#7 - Conf json for new tool/workflow

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#6 - Add tests

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#5 - add support for user supplied info via conf json to init

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#4 - first pass of list command

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#3 - Improve install

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#2 - list fields in template work properly now

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

#1 - Workflow gen

Pull Request - State: closed - Opened by junjun-zhang over 3 years ago

GitHub / icgc-argo/wfpm issues and pull requests