iVis-at-Bilkent/pathway-mapper issues and pull requests

#290 - cBioPortal API endpoints updated.

Pull Request - State: closed - Opened by YusufZiyaOzgul 11 months ago

#289 - API to get All the Cancer Studies not working.

Issue - State: open - Opened by gautamsarawagi 12 months ago - 4 comments

#288 - Error while loading new experiment data

Issue - State: open - Opened by ugurdogrusoz over 1 year ago
Labels: bug

#287 - Restructuring Genomic Data Loaders

Pull Request - State: open - Opened by gorkemsolun over 1 year ago

#286 - Transfer bug, updating svgs, underlay, and upgrading Cytoscape.js extensions

Pull Request - State: closed - Opened by gorkemsolun over 1 year ago

#285 - Upgrading Cytoscape.js in Pathway Mapper

Issue - State: closed - Opened by YusufZiyaOzgul over 1 year ago - 1 comment

#284 - Overlay for selecting

Pull Request - State: closed - Opened by gorkemsolun over 1 year ago - 3 comments

#283 - Highlight vs selection, one obstructing other

Issue - State: closed - Opened by ugurdogrusoz over 1 year ago
Labels: enhancement

#282 - Release 2.3.0

Pull Request - State: closed - Opened by onursumer over 1 year ago

#281 - PR from unstable to unstable

Pull Request - State: closed - Opened by YusufZiyaOzgul over 1 year ago

#280 - Error on connecting PM collaborative mode over https

Issue - State: open - Opened by hasanbalci over 1 year ago - 3 comments

#279 - Collaborative mode seems broken

Issue - State: closed - Opened by onursumer almost 2 years ago - 3 comments
Labels: bug, High, Collaborative

#278 - update package versions

Pull Request - State: closed - Opened by onursumer almost 2 years ago - 1 comment

#277 - PR from master to unstable

Pull Request - State: closed - Opened by YusufZiyaOzgul almost 2 years ago - 2 comments

#276 - PR from YusufZiyaOzgul/master to pathway-mapper/master

Pull Request - State: closed - Opened by YusufZiyaOzgul almost 2 years ago - 1 comment

#275 - Too much information in the console

Issue - State: closed - Opened by onursumer about 2 years ago - 3 comments

#274 - Fix for 101% issue.

Pull Request - State: closed - Opened by YusufZiyaOzgul over 2 years ago - 1 comment

#273 - Unstable

Pull Request - State: closed - Opened by YusufZiyaOzgul over 2 years ago

#272 - Prevent crashing in cBioPortal mode when run in Safari browser

Pull Request - State: closed - Opened by onursumer about 3 years ago - 1 comment

#271 - Docker Available!!!

Issue - State: closed - Opened by wangshun1121 over 3 years ago - 1 comment

#270 - Chat Feature added to Collaborative Mode, solved #269.

Pull Request - State: closed - Opened by YusufZiyaOzgul over 3 years ago - 5 comments

#269 - Chat for collaborative editing

Issue - State: closed - Opened by ugurdogrusoz over 3 years ago - 2 comments
Labels: feature

#268 - Fixes issues #258, #262, #265

Pull Request - State: closed - Opened by YusufZiyaOzgul over 3 years ago

#267 - Sync package versions

Pull Request - State: closed - Opened by onursumer over 3 years ago

#266 - Publish latest pathway-mapper package to npm

Issue - State: closed - Opened by onursumer over 3 years ago - 1 comment
Labels: task

#265 - Data set limit incorrectly applied on newly loaded data set(s)

Issue - State: closed - Opened by ugurdogrusoz over 3 years ago
Labels: enhancement

#264 - Anchor points broken in collaborative mode

Issue - State: closed - Opened by ugurdogrusoz over 3 years ago - 1 comment
Labels: invalid, Collaborative

#263 - Include labels for layout

Issue - State: closed - Opened by ugurdogrusoz over 3 years ago
Labels: enhancement

#262 - Make container nodes partly transparent when empty as well

Issue - State: closed - Opened by ugurdogrusoz over 3 years ago
Labels: enhancement

#261 - Multiple data flows for loading study data

Issue - State: open - Opened by msalihaltun over 3 years ago
Labels: task

#260 - Unexpected behavior on loading sample data

Issue - State: closed - Opened by hasanbalci over 3 years ago - 10 comments
Labels: bug

#259 - Layout Properties Editing

Issue - State: closed - Opened by YusufZiyaOzgul over 3 years ago - 2 comments

#258 - Network title in tool/menu bar

Issue - State: closed - Opened by hasanbalci over 3 years ago - 1 comment
Labels: enhancement

#257 - Node size not comply with alteration data

Issue - State: closed - Opened by hasanbalci over 3 years ago - 7 comments
Labels: bug

#256 - Test PM for 2.2 release

Issue - State: closed - Opened by ugurdogrusoz over 3 years ago
Labels: task

#255 - Collaborative mode problems

Issue - State: closed - Opened by ugurdogrusoz over 3 years ago - 2 comments
Labels: bug, Collaborative

#254 - Merge with not working properly

Issue - State: closed - Opened by ugurdogrusoz over 3 years ago
Labels: bug

#253 - Inconsistent node sizing on load

Issue - State: closed - Opened by ugurdogrusoz over 3 years ago - 3 comments
Labels: bug

#252 - Nonrendered edges on hide/show

Issue - State: closed - Opened by ugurdogrusoz over 3 years ago
Labels: bug

#251 - Switch to fcose layout style and use packing

Issue - State: closed - Opened by ugurdogrusoz over 3 years ago - 3 comments
Labels: enhancement

#250 - Graphical notation improvements

Issue - State: closed - Opened by ugurdogrusoz over 3 years ago - 7 comments
Labels: enhancement

#249 - Favicon for PM

Issue - State: closed - Opened by ugurdogrusoz over 3 years ago

#248 - Update version number to 2.2

Issue - State: closed - Opened by ugurdogrusoz over 3 years ago

#247 - Document PM architecture

Issue - State: closed - Opened by ugurdogrusoz over 3 years ago - 3 comments
Labels: task

#246 - upgrade oncoprintjs to 5.0.0

Pull Request - State: closed - Opened by onursumer over 3 years ago

#245 - Error displaying experiment data in collaborative mode

Issue - State: closed - Opened by ugurdogrusoz over 3 years ago
Labels: bug, Collaborative

#244 - Upgrade oncoprintjs to 5.0.0

Issue - State: closed - Opened by adamabeshouse over 3 years ago - 2 comments

#243 - UI improvements

Issue - State: closed - Opened by ugurdogrusoz over 3 years ago - 1 comment
Labels: enhancement

#242 - Control points replaced with bend points on the server

Issue - State: closed - Opened by ugurdogrusoz over 3 years ago
Labels: Collaborative

#241 - Remove legacy code

Issue - State: closed - Opened by msalihaltun almost 4 years ago - 1 comment
Labels: task

#240 - Edge label orientation

Issue - State: closed - Opened by ugurdogrusoz almost 4 years ago - 9 comments
Labels: enhancement

#239 - Process node default size and resizing them to content

Issue - State: closed - Opened by ugurdogrusoz almost 4 years ago
Labels: enhancement

#238 - Selected process nodes look unselected

Issue - State: closed - Opened by ugurdogrusoz almost 4 years ago - 3 comments
Labels: enhancement

#237 - Improve Toast notification styles

Issue - State: closed - Opened by msalihaltun almost 4 years ago
Labels: enhancement

#236 - Seperate webpack builds for development and production

Issue - State: closed - Opened by msalihaltun about 4 years ago

#235 - Remove usages of cy.json()

Issue - State: closed - Opened by msalihaltun about 4 years ago - 2 comments

#234 - Upgrade react-bootstrap

Issue - State: closed - Opened by msalihaltun about 4 years ago - 2 comments
Labels: wontfix

#233 - StudyModal: Dropdown overflow problem and lack of search function

Issue - State: closed - Opened by msalihaltun about 4 years ago - 8 comments
Labels: enhancement

#232 - Saving maps as SVG can't handle some styles

Issue - State: closed - Opened by msalihaltun about 4 years ago - 6 comments
Labels: enhancement

#231 - Allow tooltips on elements to be more flexible

Issue - State: closed - Opened by msalihaltun over 4 years ago - 2 comments
Labels: enhancement

#230 - Render oncoprint for patient view nodes

Pull Request - State: closed - Opened by onursumer over 4 years ago

#229 - Errors and warnings on load

Issue - State: closed - Opened by msalihaltun over 4 years ago - 1 comment
Labels: task

#228 - Backward compatibility for existing collaborative mode maps

Issue - State: closed - Opened by msalihaltun over 4 years ago - 2 comments
Labels: Collaborative

#227 - Update extensions

Issue - State: closed - Opened by ugurdogrusoz over 4 years ago - 1 comment
Labels: task

#226 - Merge unstable with master for new release

Pull Request - State: closed - Opened by Rgtemze almost 5 years ago

#225 - Cleanup console.log calls

Issue - State: closed - Opened by onursumer almost 5 years ago - 4 comments

#224 - Update outdated/deprecated libraries

Issue - State: closed - Opened by onursumer almost 5 years ago - 2 comments

#223 - Better module management

Issue - State: closed - Opened by onursumer about 5 years ago - 4 comments
Labels: task

#222 - Partial improvement for build process and dependency management

Pull Request - State: closed - Opened by onursumer about 5 years ago

#221 - Changing ranking option shows wrong pathway in table

Issue - State: closed - Opened by ugurdogrusoz about 5 years ago - 1 comment
Labels: bug, Collaborative

#220 - Nodes with alteration color black

Issue - State: closed - Opened by ugurdogrusoz about 5 years ago - 2 comments
Labels: bug

#219 - Edit pathway will not work in portal mode

Issue - State: closed - Opened by ugurdogrusoz about 5 years ago - 1 comment
Labels: bug, cBioPortal

#218 - Icons will not fit in one line in smaller screens

Issue - State: closed - Opened by ugurdogrusoz over 5 years ago
Labels: enhancement, cBioPortal

#217 - Layout properties dialog improvements

Issue - State: closed - Opened by ugurdogrusoz over 5 years ago - 3 comments
Labels: bug, enhancement

#216 - Multiple selection bug in Collaborative mode

Issue - State: closed - Opened by ugurdogrusoz over 5 years ago - 4 comments
Labels: bug, Collaborative

#215 - Edge editing problems

Issue - State: closed - Opened by ugurdogrusoz over 5 years ago - 1 comment
Labels: bug

#214 - Merge unstable to master

Pull Request - State: closed - Opened by nasimsaleh over 5 years ago

#213 - Collaborative mode problems

Issue - State: closed - Opened by ugurdogrusoz over 5 years ago - 2 comments
Labels: Critical

#212 - Heroku fixes

Pull Request - State: closed - Opened by inodb over 5 years ago

#211 - Rename import-export pathway tool tooltips

Issue - State: closed - Opened by ugurdogrusoz over 5 years ago - 1 comment
Labels: enhancement

#210 - Process nodes' selection state not visible

Issue - State: closed - Opened by ugurdogrusoz over 5 years ago - 1 comment
Labels: bug, duplicate

#209 - Export as image not named appropriately

Issue - State: closed - Opened by ugurdogrusoz over 5 years ago - 4 comments
Labels: enhancement

#208 - Object inspectors visible on single click

Issue - State: closed - Opened by ugurdogrusoz over 5 years ago - 2 comments
Labels: enhancement

#207 - Reconnection handles and bend points are off

Issue - State: closed - Opened by ugurdogrusoz over 5 years ago - 3 comments
Labels: bug

#206 - Alignment using tools in toolbar

Issue - State: closed - Opened by ugurdogrusoz over 5 years ago - 1 comment
Labels: bug

#205 - Moving Unstable to Master

Pull Request - State: closed - Opened by Rgtemze over 5 years ago - 1 comment

#204 - Cannot add bend in collaborative mode

Issue - State: closed - Opened by ugurdogrusoz over 5 years ago
Labels: bug, Collaborative

#203 - Notification pops up in other tabs as well

Issue - State: closed - Opened by Rgtemze over 5 years ago
Labels: bug, cBioPortal

#202 - Tooltip won't show up on table

Issue - State: closed - Opened by Rgtemze over 5 years ago
Labels: bug, cBioPortal

#201 - Check license of each third party library for compatibility

Issue - State: closed - Opened by ugurdogrusoz over 5 years ago - 1 comment
Labels: task

#200 - Update build related README content

Issue - State: closed - Opened by ugurdogrusoz over 5 years ago
Labels: task

#199 - Decrease top and bottom margin of toolbar

Issue - State: closed - Opened by ugurdogrusoz over 5 years ago - 1 comment
Labels: enhancement

#198 - Clean up the repo

Issue - State: closed - Opened by ugurdogrusoz over 5 years ago
Labels: task

#197 - Change license in package.json and anywhere else

Issue - State: closed - Opened by ugurdogrusoz over 5 years ago
Labels: task

#196 - Collaborative mode is not working

Issue - State: closed - Opened by leiendeckerlu over 5 years ago - 3 comments

#195 - Resize cue not present in Firefox

Issue - State: closed - Opened by Rgtemze over 5 years ago
Labels: bug

#194 - Undo of Add Selected Into This misplaces the compound

Issue - State: closed - Opened by ugurdogrusoz over 5 years ago
Labels: bug

#193 - Add name and version in Help

Issue - State: closed - Opened by ugurdogrusoz over 5 years ago
Labels: task, cBioPortal

#192 - Table is not sorted correctly

Issue - State: closed - Opened by Rgtemze over 5 years ago
Labels: bug, cBioPortal

#191 - Interaction PubMed IDs broken in collaborative mode

Issue - State: closed - Opened by ugurdogrusoz over 5 years ago
Labels: bug, Collaborative

GitHub / iVis-at-Bilkent/pathway-mapper issues and pull requests