Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / iSEE/iSEEu issues and pull requests

#121 - Assorted fixes for the AggregatedDotPlot class.

Pull Request - State: open - Opened by LTLA 2 months ago

#120 - opt in bootstrap 5

Pull Request - State: closed - Opened by kevinrue 4 months ago

#119 - Version bump to rebuild classes derived from `DotPlot`.

Pull Request - State: closed - Opened by kevinrue 4 months ago

#118 - `Dynamic marker table` not automatically updated upon selection

Issue - State: open - Opened by csoneson 5 months ago - 1 comment

#109 - Coloring Volcano by selected gene while keeping up and down colors

Issue - State: closed - Opened by daymecita over 2 years ago - 2 comments

#101 - Bug fix for DynamicMarkerTable

Pull Request - State: closed - Opened by kevinrue about 3 years ago - 1 comment

#100 - Fix bug in feature set retrieval

Pull Request - State: closed - Opened by csoneson over 3 years ago - 1 comment

#99 - Fix column transmission to AggregatedDotPlot

Pull Request - State: closed - Opened by csoneson over 3 years ago - 1 comment

#98 - Fix sample transmission to ADP

Pull Request - State: closed - Opened by csoneson over 3 years ago - 3 comments

#97 - Add biocthis GitHub Action workflow

Pull Request - State: closed - Opened by kevinrue over 3 years ago - 1 comment

#96 - Test biocthis github action for workflow performance (time)

Issue - State: closed - Opened by kevinrue over 3 years ago - 1 comment

#95 - Fix spelling typo in man page

Pull Request - State: closed - Opened by kevinrue almost 4 years ago - 2 comments

#94 - Use registration to handle app-wide DE field patterns.

Pull Request - State: closed - Opened by LTLA almost 4 years ago - 1 comment

#93 - Begin improving support for arbitrary collections.

Pull Request - State: closed - Opened by LTLA almost 4 years ago - 1 comment

#92 - Restrict HexPlot coloring to continuous variables, streamlined code.

Pull Request - State: closed - Opened by LTLA almost 4 years ago - 1 comment

#91 - Update news

Pull Request - State: closed - Opened by kevinrue almost 4 years ago

#90 - Patch to fix the devel builds for the time being.

Pull Request - State: closed - Opened by LTLA almost 4 years ago

#89 - Support setting of a multiple in-memory feature set collections

Issue - State: closed - Opened by LTLA almost 4 years ago

#88 - A more sane choice of coloring for discrete values with hex plots

Issue - State: closed - Opened by LTLA almost 4 years ago

#87 - Add UI element-specific tour components for all panels.

Pull Request - State: closed - Opened by LTLA almost 4 years ago

#86 - Added the MarkdownBoard to allow users to easily show/take notes.

Pull Request - State: closed - Opened by LTLA about 4 years ago - 1 comment

#85 - Updates to match iSEE's new selection paradigm.

Pull Request - State: closed - Opened by LTLA about 4 years ago - 1 comment

#84 - Force uniqueness onto all SE-derived selectize inputs

Pull Request - State: closed - Opened by LTLA about 4 years ago - 1 comment

#83 - Fixed handling of patterns for the LogFCLogFCPlot.

Pull Request - State: closed - Opened by LTLA about 4 years ago - 1 comment

#81 - Globpurge

Pull Request - State: closed - Opened by LTLA over 4 years ago - 1 comment

#80 - Minor tourfix to ensure that the custom rows button is checked.

Pull Request - State: closed - Opened by LTLA over 4 years ago - 1 comment

#79 - Dotplot cluster

Pull Request - State: closed - Opened by kevinrue over 4 years ago - 1 comment

#78 - allow codecov to post messages on PRs

Pull Request - State: closed - Opened by kevinrue over 4 years ago - 1 comment

#77 - Complete dotplot tests

Pull Request - State: closed - Opened by kevinrue over 4 years ago

#76 - Docker fixes

Pull Request - State: closed - Opened by LTLA over 4 years ago

#75 - Use container for Action to avoid need to install packages.

Pull Request - State: closed - Opened by LTLA over 4 years ago

#74 - first batch of tests

Pull Request - State: closed - Opened by kevinrue over 4 years ago

#73 - Initial draft of the AggregatedDotPlot panel.

Pull Request - State: closed - Opened by LTLA over 4 years ago - 2 comments

#72 - Avoid sharing internal variables to compute numbers of DEGs.

Pull Request - State: closed - Opened by LTLA over 4 years ago

#71 - Bumped version to trigger rebuild for new classes.

Pull Request - State: closed - Opened by LTLA over 4 years ago

#70 - Miscellaneous fixes here and there.

Pull Request - State: closed - Opened by LTLA over 4 years ago

#69 - Added tours for all panels.

Pull Request - State: closed - Opened by LTLA over 4 years ago

#68 - Need to actually import stat_summary_hex

Issue - State: closed - Opened by LTLA over 4 years ago - 2 comments

#67 - More stuff

Pull Request - State: closed - Opened by LTLA over 4 years ago

#65 - Consistency in the DE plot regex.

Issue - State: closed - Opened by LTLA over 4 years ago

#64 - Miscellaneous fixes here and there.

Pull Request - State: closed - Opened by LTLA over 4 years ago

#63 - Fix handling of globals to ensure persistence and class-wide application.

Pull Request - State: closed - Opened by LTLA over 4 years ago

#62 - Added a logFC-logFC plot panel to compare two sets of DE results.

Pull Request - State: closed - Opened by LTLA over 4 years ago

#61 - Updates to all of the classes

Pull Request - State: closed - Opened by LTLA over 4 years ago

#60 - Defines the FeatureSetTable class for better handling of feature sets.

Pull Request - State: closed - Opened by LTLA over 4 years ago

#59 - Update GeneSetTable API and documentation.

Pull Request - State: closed - Opened by LTLA over 4 years ago

#58 - Incorporate extra rowData fields in the DiffStatTable.

Pull Request - State: closed - Opened by LTLA over 4 years ago

#57 - Comments on ReducedDimensionHexPlot

Issue - State: closed - Opened by LTLA over 4 years ago - 2 comments

#56 - Include the variable name in GeneSetTable's .generateOutput.

Pull Request - State: closed - Opened by LTLA over 4 years ago

#55 - use the dockerhub image

Pull Request - State: closed - Opened by kevinrue over 4 years ago

#54 - Use iSEE docker image

Pull Request - State: closed - Opened by kevinrue over 4 years ago

#53 - no need to cache packages when using a container

Pull Request - State: closed - Opened by kevinrue over 4 years ago

#52 - Update GHA steps that refer to deprecated configuration matrix

Pull Request - State: closed - Opened by kevinrue over 4 years ago

#51 - Add code coverage badge

Pull Request - State: closed - Opened by kevinrue over 4 years ago

#50 - add code coverage badge on README

Issue - State: closed - Opened by kevinrue over 4 years ago - 1 comment

#49 - Revert to action/checkout@v1

Pull Request - State: closed - Opened by kevinrue over 4 years ago - 1 comment

#48 - Fix GHA step 'Publish to registry'

Pull Request - State: closed - Opened by kevinrue over 4 years ago

#47 - Update GHA steps that refer to deprecated configuration matrix

Issue - State: closed - Opened by kevinrue over 4 years ago - 2 comments

#46 - no need to cache R packages when using containerized GHA

Issue - State: closed - Opened by kevinrue over 4 years ago - 2 comments

#45 - add Dockerfile

Pull Request - State: closed - Opened by kevinrue over 4 years ago

#44 - Add a Dockerfile

Issue - State: closed - Opened by kevinrue over 4 years ago

#43 - Rename GHA yaml file to match the action and badge name

Pull Request - State: closed - Opened by kevinrue over 4 years ago

#42 - Rename GHA to build_check_deploy.yml

Issue - State: closed - Opened by kevinrue over 4 years ago - 1 comment

#41 - update GHA to run on bioconductor/bioconductor_docker:devel

Pull Request - State: closed - Opened by kevinrue over 4 years ago

#40 - Update GHA workflow

Issue - State: closed - Opened by kevinrue over 4 years ago - 1 comment

#39 - More comprehensive documentation of the RedDimHexPlot panel slots and methods

Pull Request - State: closed - Opened by kevinrue over 4 years ago - 1 comment

#38 - Copy action from iSEE

Pull Request - State: closed - Opened by kevinrue over 4 years ago - 1 comment

#37 - [BUG] Left a print statement in the code tracking utility somewhere

Issue - State: closed - Opened by LTLA almost 5 years ago

#36 - version bump 0.99.8

Pull Request - State: closed - Opened by kevinrue almost 5 years ago

#35 - Revision after Bioc review

Pull Request - State: closed - Opened by federicomarini almost 5 years ago - 3 comments

#34 - Version bump

Pull Request - State: closed - Opened by csoneson almost 5 years ago

#33 - Screenshots

Pull Request - State: closed - Opened by LTLA almost 5 years ago - 1 comment

#32 - Forgot Rscript in deployment code

Pull Request - State: closed - Opened by csoneson almost 5 years ago

#31 - GitHub Actions

Pull Request - State: closed - Opened by csoneson almost 5 years ago - 3 comments

#30 - Create observer for Assay in DiffStatTable.

Pull Request - State: closed - Opened by LTLA almost 5 years ago - 1 comment

#29 - bump 0.99.1

Pull Request - State: closed - Opened by kevinrue almost 5 years ago

#28 - Bioc

Pull Request - State: closed - Opened by kevinrue almost 5 years ago - 1 comment

#27 - fix Bioc build

Pull Request - State: closed - Opened by kevinrue almost 5 years ago

#26 - Add screenshots to vignette

Issue - State: closed - Opened by LTLA almost 5 years ago

#25 - Updated version of the Code of Conduct

Pull Request - State: closed - Opened by federicomarini almost 5 years ago

#24 - removing unnecessary {-} from the readme

Pull Request - State: closed - Opened by federicomarini almost 5 years ago

#23 - Update contributors

Pull Request - State: closed - Opened by csoneson almost 5 years ago

#22 - Cleanup

Pull Request - State: closed - Opened by kevinrue almost 5 years ago - 1 comment

#21 - New panels: ColumnMetadataTable & RowMetadataTable

Issue - State: closed - Opened by kevinrue almost 5 years ago - 2 comments

#20 - Reddim

Pull Request - State: closed - Opened by csoneson almost 5 years ago - 1 comment

#19 - Added the GeneSetTable panel.

Pull Request - State: closed - Opened by LTLA almost 5 years ago - 1 comment

#18 - Began migrating panels from book to here

Pull Request - State: closed - Opened by LTLA almost 5 years ago - 2 comments

#17 - Created more streamlined vignette.

Pull Request - State: closed - Opened by LTLA almost 5 years ago - 1 comment

#16 - Brooming up

Pull Request - State: closed - Opened by federicomarini almost 5 years ago - 1 comment

#15 - Added tests for my new panels.

Pull Request - State: closed - Opened by LTLA almost 5 years ago

#14 - Hexagonal reduced dimension plot

Pull Request - State: closed - Opened by kevinrue almost 5 years ago - 3 comments

#13 - Bugfix for proper downsampling priority in DE plots.

Pull Request - State: closed - Opened by LTLA almost 5 years ago - 1 comment

#12 - Minor version bump to trigger rebuild.

Pull Request - State: closed - Opened by LTLA almost 5 years ago

#11 - update links to GH organization; roxygenize

Pull Request - State: closed - Opened by kevinrue almost 5 years ago - 1 comment

#10 - Isee2.0

Pull Request - State: closed - Opened by csoneson almost 5 years ago

#9 - Disable merge requirements

Issue - State: closed - Opened by LTLA almost 5 years ago - 1 comment

#8 - Initial draft of volcano plot panel.

Pull Request - State: closed - Opened by LTLA almost 5 years ago - 1 comment

#7 - Default interface simplification?

Issue - State: closed - Opened by robertamezquita about 5 years ago - 6 comments

#6 - Addition of interactive analysis features (DE/GSEA)

Issue - State: closed - Opened by robertamezquita about 5 years ago - 1 comment