Ecosyste.ms: Issues

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GitHub / hypnopump/rgn2-replica issues and pull requests

#31 - updated discord link in README

Pull Request - State: closed - Opened by Serhiy-Shekhovtsov about 3 years ago - 1 comment

#30 - Discord Join

Issue - State: closed - Opened by Akrielz about 3 years ago - 3 comments

#28 - Support IPA-based refiner

Pull Request - State: open - Opened by hushuangwei over 3 years ago

#27 - Implementing AlphaFold-based protein refinement

Pull Request - State: open - Opened by Serhiy-Shekhovtsov over 3 years ago

#26 - Implementing AlphaFold-based protein refinement

Pull Request - State: closed - Opened by Serhiy-Shekhovtsov over 3 years ago - 1 comment

#25 - update pfam and go labels cardinality

Pull Request - State: closed - Opened by gurvindersingh over 3 years ago

#24 - Update tokenizer, sample data and fix PFAM labels

Pull Request - State: closed - Opened by gurvindersingh over 3 years ago - 1 comment

#23 - perf(AconC): replicate shared values

Pull Request - State: open - Opened by ClashLuke over 3 years ago - 3 comments

#22 - Implementing DataCollatorForSpanPermutationLM

Pull Request - State: closed - Opened by Serhiy-Shekhovtsov over 3 years ago - 1 comment

#21 - added get_embedders support

Pull Request - State: closed - Opened by Serhiy-Shekhovtsov over 3 years ago - 1 comment

#20 - added basic version of train script

Pull Request - State: closed - Opened by Serhiy-Shekhovtsov over 3 years ago - 1 comment

#19 - fixed batch_inferenced issue(maybe)

Pull Request - State: closed - Opened by Serhiy-Shekhovtsov over 3 years ago

#18 - [WIP] Implementing DataCollatorForSpanPermutationLM

Pull Request - State: closed - Opened by Serhiy-Shekhovtsov over 3 years ago - 2 comments

#17 - fixed labels getting pad tokens

Pull Request - State: closed - Opened by gurvindersingh over 3 years ago

#16 - fixed bug in tokenizer and update example dataset accordingly

Pull Request - State: closed - Opened by gurvindersingh over 3 years ago

#14 - add support for ignoring loss when label is 0

Pull Request - State: closed - Opened by gurvindersingh over 3 years ago

#13 - added support for pfam and go annotations

Pull Request - State: closed - Opened by gurvindersingh over 3 years ago - 1 comment

#12 - Loss update to multilevel for pfam and go

Pull Request - State: closed - Opened by DrHB over 3 years ago - 3 comments

#11 - updated sample dataset with labels from Pfam-A and Pfam-N as well as …

Pull Request - State: closed - Opened by gurvindersingh over 3 years ago - 1 comment

#10 - Add embedders module with wrappers for CLASP and ESM-1b models

Pull Request - State: closed - Opened by Serhiy-Shekhovtsov over 3 years ago - 2 comments

#9 - add wandb to the list of dependencies

Pull Request - State: closed - Opened by Serhiy-Shekhovtsov over 3 years ago - 3 comments

#8 - fix `VOCAB` undefined issue

Pull Request - State: closed - Opened by Serhiy-Shekhovtsov over 3 years ago - 1 comment

#7 - Add structure refinement in PyRosetta

Pull Request - State: closed - Opened by jeffreyruffolo over 3 years ago

#5 - fix readme

Pull Request - State: closed - Opened by gurvindersingh over 3 years ago

#4 - add support to train protein LM using MLM loss

Pull Request - State: closed - Opened by gurvindersingh over 3 years ago

#3 - amino Bret langugae model loss

Pull Request - State: closed - Opened by DrHB over 3 years ago - 3 comments

#2 - added small sample of tokenized ur90 dataset and tokenize class

Pull Request - State: closed - Opened by gurvindersingh over 3 years ago

#1 - Random notes

Issue - State: open - Opened by hypnopump over 3 years ago - 5 comments