Ecosyste.ms: Issues

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GitHub / hypnopump/minifold issues and pull requests

#48 - The pretrained model doesn't load

Issue - State: open - Opened by bakirillov over 3 years ago

#47 - Training data set

Issue - State: open - Opened by Valdes-Tresanco-MS over 3 years ago

#46 - Error when running angle_data_preparation_py.ipynb

Issue - State: open - Opened by dsikar almost 4 years ago - 1 comment

#45 - Error when loading the model

Issue - State: closed - Opened by SiddhantKumar-Dev almost 4 years ago - 1 comment

#44 - Can't run distance_pipeline pretrain_model_pssm_l_x_l

Issue - State: closed - Opened by SiddhantKumar-Dev almost 4 years ago

#43 - Bump pyyaml from 5.1 to 5.4

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies

#42 - How to make pssm file?

Issue - State: closed - Opened by Planet-KIM almost 4 years ago - 2 comments

#41 - How to get GDT score?

Issue - State: closed - Opened by Planet-KIM almost 4 years ago - 1 comment

#40 - Bump jinja2 from 2.10.1 to 2.11.3

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies

#39 - Bump pillow from 6.2.2 to 8.1.1

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies

#38 - Error while executing pretrain_model_pssn_l_x_l.ipynb

Issue - State: open - Opened by Lanart93 about 4 years ago - 7 comments

#37 - Bump tensorflow-gpu from 1.12.0 to 2.4.0

Pull Request - State: closed - Opened by dependabot[bot] about 4 years ago - 4 comments
Labels: dependencies

#36 - Bump notebook from 5.7.8 to 6.1.5

Pull Request - State: closed - Opened by dependabot[bot] about 4 years ago
Labels: dependencies

#35 - Bump tensorflow-gpu from 1.12.0 to 2.3.1

Pull Request - State: closed - Opened by dependabot[bot] about 4 years ago - 1 comment
Labels: dependencies

#34 - Updated readme.md

Pull Request - State: closed - Opened by PSN01 over 4 years ago - 2 comments

#33 - Revert "Revert "Added format conversion""

Pull Request - State: closed - Opened by hypnopump over 4 years ago

#32 - Revert "Added format conversion"

Pull Request - State: closed - Opened by hypnopump over 4 years ago

#31 - Added format conversion

Pull Request - State: closed - Opened by PSN01 over 4 years ago - 5 comments

#30 - Bump tensorflow-gpu from 1.12.0 to 1.15.4

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies

#29 - what's the meaning of paramter "17"?

Issue - State: closed - Opened by fakerXue over 4 years ago - 2 comments

#28 - where is the file "90_full_under_200.txt"?

Issue - State: closed - Opened by fakerXue over 4 years ago - 5 comments

#27 - Regarding input and distance matrix padding.

Issue - State: closed - Opened by n4ndoz almost 5 years ago - 3 comments

#26 - Hotfix in predicting angles notebook

Pull Request - State: closed - Opened by roberCO almost 5 years ago

#25 - Decodification angles error fixed. Notebook and trained model updated

Pull Request - State: closed - Opened by roberCO almost 5 years ago

#24 - Fix angle decodification error improved. Validation plot shows correct values

Pull Request - State: closed - Opened by roberCO almost 5 years ago - 6 comments

#23 - Bump bleach from 3.0.2 to 3.1.4

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies

#22 - Bump bleach from 3.0.2 to 3.1.2

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies

#21 - ValueError: None values not supported.

Issue - State: closed - Opened by PINGJINMING almost 5 years ago - 3 comments

#20 - Bump bleach from 3.0.2 to 3.1.1

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies

#19 - Bump django from 2.1.7 to 2.2.10

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies

#18 - Bump pillow from 5.3.0 to 6.2.0

Pull Request - State: closed - Opened by dependabot[bot] about 5 years ago
Labels: dependencies

#17 - Bump tensorflow-gpu from 1.12.0 to 1.15.2

Pull Request - State: closed - Opened by dependabot[bot] about 5 years ago - 1 comment
Labels: dependencies

#16 - Bump notebook from 5.7.2 to 5.7.8

Pull Request - State: closed - Opened by dependabot[bot] about 5 years ago - 1 comment
Labels: dependencies

#15 - Bump werkzeug from 0.14.1 to 0.15.3

Pull Request - State: closed - Opened by dependabot[bot] about 5 years ago - 1 comment
Labels: dependencies

#14 - Bump urllib3 from 1.24.1 to 1.24.2

Pull Request - State: closed - Opened by dependabot[bot] about 5 years ago
Labels: dependencies

#13 - Bump nltk from 3.4 to 3.4.5

Pull Request - State: closed - Opened by dependabot[bot] about 5 years ago - 1 comment
Labels: dependencies

#12 - Bump pyyaml from 3.13 to 5.1

Pull Request - State: closed - Opened by dependabot[bot] about 5 years ago - 1 comment
Labels: dependencies

#11 - Update get_proteins_under_200aa.jl

Pull Request - State: closed - Opened by thetechnocrat-dev about 5 years ago

#10 - Installation problem

Issue - State: closed - Opened by Sunyp-IM about 5 years ago - 1 comment

#9 - Julia preprocessing error

Issue - State: closed - Opened by asawanggaa over 5 years ago - 2 comments

#8 - Engineer PSSM-based features

Issue - State: closed - Opened by hypnopump almost 6 years ago
Labels: help wanted, ideas, CONTRIBUTE

#7 - Problem: assign weights to classes - solve via Genetic Algorithm/PSO?

Issue - State: closed - Opened by hypnopump almost 6 years ago - 1 comment
Labels: enhancement, help wanted, EXTRA POINTS, CONTRIBUTE

#6 - Add more training features

Issue - State: closed - Opened by hypnopump almost 6 years ago - 1 comment
Labels: help wanted

#5 - Train w/ 64x64 crops and average at prediction time

Issue - State: open - Opened by hypnopump almost 6 years ago - 2 comments
Labels: in progress

#4 - Distance prediction treshold

Issue - State: open - Opened by simonMoisselin almost 6 years ago - 6 comments
Labels: ideas

#3 - Test branch

Pull Request - State: closed - Opened by AmeyaHarmalkar almost 6 years ago - 2 comments

#2 - Use Physicochemical features of AAs as input.

Issue - State: open - Opened by hypnopump almost 6 years ago - 5 comments
Labels: help wanted, CONTRIBUTE

#1 - Create LICENSE

Pull Request - State: closed - Opened by hypnopump almost 6 years ago