Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / hydra-genetics/hydra-genetics issues and pull requests
#373 - fix: crash if pipeline dir is not a git repo
Pull Request -
State: closed - Opened by maehler 5 months ago
#372 - chore: release 3.0.0
Pull Request -
State: open - Opened by github-actions[bot] 5 months ago
Labels: autorelease: pending
#371 - docs: Update version number required for hydra-genetics and edited instruct…
Pull Request -
State: closed - Opened by camcl 5 months ago
#370 - chore: release 3.0.0
Pull Request -
State: closed - Opened by github-actions[bot] 6 months ago
Labels: autorelease: pending
#369 - chore(master): release 3.0.0
Pull Request -
State: closed - Opened by Smeds 6 months ago
- 1 comment
Labels: autorelease: tagged
#368 - chore: release 3.0.0
Pull Request -
State: closed - Opened by github-actions[bot] 6 months ago
Labels: autorelease: pending
#367 - chore: dev to master
Pull Request -
State: closed - Opened by Smeds 6 months ago
#366 - fix: handle remote on local file the same
Pull Request -
State: closed - Opened by Smeds 6 months ago
#365 - Fix version bug
Pull Request -
State: closed - Opened by Smeds 6 months ago
#364 - refactor: remove print
Pull Request -
State: closed - Opened by Smeds 6 months ago
#363 - feat: report all region_all variants in cov_and_mut
Pull Request -
State: closed - Opened by jonca79 6 months ago
#362 - fix: filter more one docker labels
Pull Request -
State: closed - Opened by Smeds 6 months ago
#361 - feat: output software versions into one file
Pull Request -
State: closed - Opened by elleira 6 months ago
- 1 comment
#360 - chore: release 2.0.1
Pull Request -
State: closed - Opened by github-actions[bot] 7 months ago
Labels: autorelease: pending
#359 - fix: convert name_list to set to remove duplicate items
Pull Request -
State: closed - Opened by padraicc 7 months ago
#358 - chore(master): release 2.0.1
Pull Request -
State: closed - Opened by Smeds 7 months ago
- 1 comment
Labels: autorelease: tagged
#357 - chore: release 2.0.1
Pull Request -
State: closed - Opened by github-actions[bot] 7 months ago
Labels: autorelease: pending
#356 - chore: dev to master
Pull Request -
State: closed - Opened by Smeds 7 months ago
#355 - ci: update release please
Pull Request -
State: closed - Opened by Smeds 7 months ago
#354 - fix: name and version extraction from name_and_version split
Pull Request -
State: closed - Opened by padraicc 7 months ago
#353 - chore: dev to master
Pull Request -
State: closed - Opened by Smeds 7 months ago
#352 - docs: add badge for mkdocs
Pull Request -
State: closed - Opened by Smeds 7 months ago
#351 - chore: dev to master
Pull Request -
State: closed - Opened by Smeds 7 months ago
#350 - chore: release 2.0.0
Pull Request -
State: closed - Opened by github-actions[bot] 7 months ago
- 1 comment
Labels: autorelease: tagged
#349 - fix(utils): change container re search pattern
Pull Request -
State: closed - Opened by padraicc 7 months ago
#348 - ci: add token to make it possible for please-release to run actions
Pull Request -
State: closed - Opened by Smeds 7 months ago
#347 - chore: dev to master
Pull Request -
State: closed - Opened by Smeds 8 months ago
#346 - chore: Update software_versions.py
Pull Request -
State: closed - Opened by elleira 8 months ago
#345 - fix: fix typo in warning message
Pull Request -
State: closed - Opened by padraicc 8 months ago
#344 - feat: Update units.schema.yaml for long read
Pull Request -
State: closed - Opened by padraicc 9 months ago
#343 - feat: create input files from long read bam files
Pull Request -
State: closed - Opened by padraicc 9 months ago
#342 - docs: update import from tool versions
Pull Request -
State: closed - Opened by elleira 9 months ago
#341 - fix: minor updates to pipeline template
Pull Request -
State: closed - Opened by Smeds 9 months ago
#340 - chore: dev to master
Pull Request -
State: closed - Opened by Smeds 9 months ago
#339 - docs: change filename
Pull Request -
State: closed - Opened by Smeds 9 months ago
#338 - chore: release 1.14.0
Pull Request -
State: closed - Opened by github-actions[bot] 9 months ago
- 1 comment
Labels: autorelease: tagged
#337 - chore: dev to master
Pull Request -
State: closed - Opened by Smeds 9 months ago
#336 - docs: add missing variable to example
Pull Request -
State: closed - Opened by Smeds 9 months ago
#335 - chore: release 1.13.0
Pull Request -
State: closed - Opened by github-actions[bot] 9 months ago
- 1 comment
Labels: autorelease: tagged
#334 - chore: dev to master
Pull Request -
State: closed - Opened by Smeds 9 months ago
#333 - feat: function used to print pipeline version
Pull Request -
State: closed - Opened by Smeds 9 months ago
#332 - feat: add functions used to annotate config with software versions
Pull Request -
State: closed - Opened by Smeds 9 months ago
#331 - chore: release 1.12.0
Pull Request -
State: closed - Opened by github-actions[bot] 9 months ago
- 1 comment
Labels: autorelease: tagged
#330 - chore: dev to master
Pull Request -
State: closed - Opened by Smeds 9 months ago
#329 - feat: update handling of reference files
Pull Request -
State: closed - Opened by Smeds 10 months ago
#328 - fix: handle tumour content set to 0 when creating sample.tsv
Pull Request -
State: closed - Opened by padraicc 10 months ago
#327 - chore: release 1.11.1
Pull Request -
State: closed - Opened by github-actions[bot] 10 months ago
- 1 comment
Labels: autorelease: tagged
#326 - chore: dev to master
Pull Request -
State: closed - Opened by Smeds 10 months ago
#325 - fix: match latest settings format
Pull Request -
State: closed - Opened by Smeds 10 months ago
#324 - chore: release 1.11.0
Pull Request -
State: closed - Opened by github-actions[bot] 10 months ago
- 1 comment
Labels: autorelease: tagged
#323 - chore: dev to master
Pull Request -
State: closed - Opened by Smeds 10 months ago
#322 - feat: make it possible to populate samples and units with data from j…
Pull Request -
State: closed - Opened by Smeds 10 months ago
#321 - refactor: barcode added
Pull Request -
State: closed - Opened by nnneeennn 11 months ago
#320 - refactor: output default values when using --help
Pull Request -
State: closed - Opened by elleira 11 months ago
#319 - perf: improve performance and fix minor issue
Pull Request -
State: closed - Opened by Smeds 11 months ago
#318 - feat: update snakefmt linter version for pipeline template
Pull Request -
State: closed - Opened by Smeds 11 months ago
#317 - chore: release 1.10.2
Pull Request -
State: closed - Opened by github-actions[bot] 12 months ago
- 1 comment
Labels: autorelease: tagged
#316 - chore: dev to master
Pull Request -
State: closed - Opened by jonca79 12 months ago
#315 - fix: return None when empty string in vep annotation
Pull Request -
State: closed - Opened by jonca79 12 months ago
#314 - chore: release 1.10.1
Pull Request -
State: closed - Opened by github-actions[bot] 12 months ago
- 1 comment
Labels: autorelease: tagged
#313 - chore: dev to master
Pull Request -
State: closed - Opened by jonca79 12 months ago
#312 - fix: bug in vep annotation handling
Pull Request -
State: closed - Opened by jonca79 12 months ago
#311 - chore: release 1.10.0
Pull Request -
State: closed - Opened by github-actions[bot] 12 months ago
- 1 comment
Labels: autorelease: tagged
#310 - chore: dev to master
Pull Request -
State: closed - Opened by Smeds 12 months ago
#309 - ci: update test build workflow
Pull Request -
State: closed - Opened by Smeds 12 months ago
#308 - ci: update test build workflow
Pull Request -
State: closed - Opened by Smeds 12 months ago
#307 - feat: added handling and selection between multiple transcripts in ho…
Pull Request -
State: closed - Opened by jonca79 12 months ago
#306 - chore: release 1.9.1
Pull Request -
State: closed - Opened by github-actions[bot] about 1 year ago
- 1 comment
Labels: autorelease: tagged
#305 - chore: dev to master
Pull Request -
State: closed - Opened by Smeds about 1 year ago
#304 - fix: handle list of str when replacing config variables
Pull Request -
State: closed - Opened by Smeds about 1 year ago
#303 - ci: remove if statements
Pull Request -
State: closed - Opened by Smeds about 1 year ago
#302 - ci: add test build workflow
Pull Request -
State: closed - Opened by Smeds about 1 year ago
#301 - chore: release 1.9.0
Pull Request -
State: closed - Opened by github-actions[bot] about 1 year ago
- 1 comment
Labels: autorelease: tagged
#300 - chore: dev to master
Pull Request -
State: closed - Opened by Smeds about 1 year ago
#299 - docs: update hydra-genetics version in docs and templates
Pull Request -
State: closed - Opened by Smeds about 1 year ago
#298 - fix: handle events when a file is listed multiple times in the config
Pull Request -
State: closed - Opened by Smeds about 1 year ago
#297 - fix: handle case one requested number of reads couldn't be selected
Pull Request -
State: closed - Opened by Smeds about 1 year ago
#296 - feat: add test build mkdocs to template
Pull Request -
State: closed - Opened by Smeds about 1 year ago
#295 - docs: update hydra-genetics version for simple pipeline
Pull Request -
State: closed - Opened by Smeds about 1 year ago
#294 - docs: update env setup to use required python version python3.8 inste…
Pull Request -
State: closed - Opened by Smeds about 1 year ago
#293 - chore: release 1.8.1
Pull Request -
State: closed - Opened by github-actions[bot] about 1 year ago
- 1 comment
Labels: autorelease: tagged
#292 - chore: dev to master
Pull Request -
State: closed - Opened by Smeds about 1 year ago
#291 - fix: remove code
Pull Request -
State: closed - Opened by Smeds about 1 year ago
#290 - chore: release 1.8.0
Pull Request -
State: closed - Opened by github-actions[bot] about 1 year ago
- 1 comment
Labels: autorelease: tagged
#289 - chore: dev to master
Pull Request -
State: closed - Opened by Smeds about 1 year ago
#288 - feat: make it possible to define links handling fetching data
Pull Request -
State: closed - Opened by Smeds about 1 year ago
#287 - fix: reduce memory usage when downloading files
Pull Request -
State: closed - Opened by Smeds about 1 year ago
#286 - chore: release 1.7.0
Pull Request -
State: closed - Opened by github-actions[bot] about 1 year ago
- 1 comment
Labels: autorelease: tagged
#285 - feat: function used to add variable options to a yaml file
Pull Request -
State: closed - Opened by Smeds about 1 year ago
#284 - feat: output more information about download/validation for ref files
Pull Request -
State: closed - Opened by Smeds over 1 year ago
#283 - refactor: add more logging
Pull Request -
State: closed - Opened by Smeds over 1 year ago
#282 - chore: dev to master
Pull Request -
State: closed - Opened by Smeds over 1 year ago
#281 - refactor: simplify code and add more logging
Pull Request -
State: closed - Opened by Smeds over 1 year ago
#280 - refactor: add more logging messages
Pull Request -
State: closed - Opened by Smeds over 1 year ago
#279 - fix: parent folder bug and remove existing folder if it needs updating
Pull Request -
State: closed - Opened by Smeds over 1 year ago
#278 - refactor: remove print statment
Pull Request -
State: closed - Opened by Smeds over 1 year ago
#277 - feat: update reference fetching
Pull Request -
State: closed - Opened by Smeds over 1 year ago
#276 - docs: update rtd links
Pull Request -
State: closed - Opened by jonca79 over 1 year ago
#275 - chore: release 1.6.0
Pull Request -
State: closed - Opened by github-actions[bot] over 1 year ago
- 1 comment
Labels: autorelease: tagged
#274 - chore: dev to master
Pull Request -
State: closed - Opened by Smeds over 1 year ago