Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / hydra-genetics/hydra-genetics issues and pull requests

#373 - fix: crash if pipeline dir is not a git repo

Pull Request - State: closed - Opened by maehler 5 months ago

#372 - chore: release 3.0.0

Pull Request - State: open - Opened by github-actions[bot] 5 months ago
Labels: autorelease: pending

#370 - chore: release 3.0.0

Pull Request - State: closed - Opened by github-actions[bot] 6 months ago
Labels: autorelease: pending

#369 - chore(master): release 3.0.0

Pull Request - State: closed - Opened by Smeds 6 months ago - 1 comment
Labels: autorelease: tagged

#368 - chore: release 3.0.0

Pull Request - State: closed - Opened by github-actions[bot] 6 months ago
Labels: autorelease: pending

#367 - chore: dev to master

Pull Request - State: closed - Opened by Smeds 6 months ago

#366 - fix: handle remote on local file the same

Pull Request - State: closed - Opened by Smeds 6 months ago

#365 - Fix version bug

Pull Request - State: closed - Opened by Smeds 6 months ago

#364 - refactor: remove print

Pull Request - State: closed - Opened by Smeds 6 months ago

#363 - feat: report all region_all variants in cov_and_mut

Pull Request - State: closed - Opened by jonca79 6 months ago

#362 - fix: filter more one docker labels

Pull Request - State: closed - Opened by Smeds 6 months ago

#361 - feat: output software versions into one file

Pull Request - State: closed - Opened by elleira 6 months ago - 1 comment

#360 - chore: release 2.0.1

Pull Request - State: closed - Opened by github-actions[bot] 7 months ago
Labels: autorelease: pending

#359 - fix: convert name_list to set to remove duplicate items

Pull Request - State: closed - Opened by padraicc 7 months ago

#358 - chore(master): release 2.0.1

Pull Request - State: closed - Opened by Smeds 7 months ago - 1 comment
Labels: autorelease: tagged

#357 - chore: release 2.0.1

Pull Request - State: closed - Opened by github-actions[bot] 7 months ago
Labels: autorelease: pending

#356 - chore: dev to master

Pull Request - State: closed - Opened by Smeds 7 months ago

#355 - ci: update release please

Pull Request - State: closed - Opened by Smeds 7 months ago

#354 - fix: name and version extraction from name_and_version split

Pull Request - State: closed - Opened by padraicc 7 months ago

#353 - chore: dev to master

Pull Request - State: closed - Opened by Smeds 7 months ago

#352 - docs: add badge for mkdocs

Pull Request - State: closed - Opened by Smeds 7 months ago

#351 - chore: dev to master

Pull Request - State: closed - Opened by Smeds 7 months ago

#350 - chore: release 2.0.0

Pull Request - State: closed - Opened by github-actions[bot] 7 months ago - 1 comment
Labels: autorelease: tagged

#349 - fix(utils): change container re search pattern

Pull Request - State: closed - Opened by padraicc 7 months ago

#348 - ci: add token to make it possible for please-release to run actions

Pull Request - State: closed - Opened by Smeds 7 months ago

#347 - chore: dev to master

Pull Request - State: closed - Opened by Smeds 8 months ago

#346 - chore: Update software_versions.py

Pull Request - State: closed - Opened by elleira 8 months ago

#345 - fix: fix typo in warning message

Pull Request - State: closed - Opened by padraicc 8 months ago

#344 - feat: Update units.schema.yaml for long read

Pull Request - State: closed - Opened by padraicc 9 months ago

#343 - feat: create input files from long read bam files

Pull Request - State: closed - Opened by padraicc 9 months ago

#342 - docs: update import from tool versions

Pull Request - State: closed - Opened by elleira 9 months ago

#341 - fix: minor updates to pipeline template

Pull Request - State: closed - Opened by Smeds 9 months ago

#340 - chore: dev to master

Pull Request - State: closed - Opened by Smeds 9 months ago

#339 - docs: change filename

Pull Request - State: closed - Opened by Smeds 9 months ago

#338 - chore: release 1.14.0

Pull Request - State: closed - Opened by github-actions[bot] 9 months ago - 1 comment
Labels: autorelease: tagged

#337 - chore: dev to master

Pull Request - State: closed - Opened by Smeds 9 months ago

#336 - docs: add missing variable to example

Pull Request - State: closed - Opened by Smeds 9 months ago

#335 - chore: release 1.13.0

Pull Request - State: closed - Opened by github-actions[bot] 9 months ago - 1 comment
Labels: autorelease: tagged

#334 - chore: dev to master

Pull Request - State: closed - Opened by Smeds 9 months ago

#333 - feat: function used to print pipeline version

Pull Request - State: closed - Opened by Smeds 9 months ago

#332 - feat: add functions used to annotate config with software versions

Pull Request - State: closed - Opened by Smeds 9 months ago

#331 - chore: release 1.12.0

Pull Request - State: closed - Opened by github-actions[bot] 9 months ago - 1 comment
Labels: autorelease: tagged

#330 - chore: dev to master

Pull Request - State: closed - Opened by Smeds 9 months ago

#329 - feat: update handling of reference files

Pull Request - State: closed - Opened by Smeds 10 months ago

#328 - fix: handle tumour content set to 0 when creating sample.tsv

Pull Request - State: closed - Opened by padraicc 10 months ago

#327 - chore: release 1.11.1

Pull Request - State: closed - Opened by github-actions[bot] 10 months ago - 1 comment
Labels: autorelease: tagged

#326 - chore: dev to master

Pull Request - State: closed - Opened by Smeds 10 months ago

#325 - fix: match latest settings format

Pull Request - State: closed - Opened by Smeds 10 months ago

#324 - chore: release 1.11.0

Pull Request - State: closed - Opened by github-actions[bot] 10 months ago - 1 comment
Labels: autorelease: tagged

#323 - chore: dev to master

Pull Request - State: closed - Opened by Smeds 10 months ago

#321 - refactor: barcode added

Pull Request - State: closed - Opened by nnneeennn 11 months ago

#320 - refactor: output default values when using --help

Pull Request - State: closed - Opened by elleira 11 months ago

#319 - perf: improve performance and fix minor issue

Pull Request - State: closed - Opened by Smeds 11 months ago

#318 - feat: update snakefmt linter version for pipeline template

Pull Request - State: closed - Opened by Smeds 11 months ago

#317 - chore: release 1.10.2

Pull Request - State: closed - Opened by github-actions[bot] 12 months ago - 1 comment
Labels: autorelease: tagged

#316 - chore: dev to master

Pull Request - State: closed - Opened by jonca79 12 months ago

#315 - fix: return None when empty string in vep annotation

Pull Request - State: closed - Opened by jonca79 12 months ago

#314 - chore: release 1.10.1

Pull Request - State: closed - Opened by github-actions[bot] 12 months ago - 1 comment
Labels: autorelease: tagged

#313 - chore: dev to master

Pull Request - State: closed - Opened by jonca79 12 months ago

#312 - fix: bug in vep annotation handling

Pull Request - State: closed - Opened by jonca79 12 months ago

#311 - chore: release 1.10.0

Pull Request - State: closed - Opened by github-actions[bot] 12 months ago - 1 comment
Labels: autorelease: tagged

#310 - chore: dev to master

Pull Request - State: closed - Opened by Smeds 12 months ago

#309 - ci: update test build workflow

Pull Request - State: closed - Opened by Smeds 12 months ago

#308 - ci: update test build workflow

Pull Request - State: closed - Opened by Smeds 12 months ago

#306 - chore: release 1.9.1

Pull Request - State: closed - Opened by github-actions[bot] about 1 year ago - 1 comment
Labels: autorelease: tagged

#305 - chore: dev to master

Pull Request - State: closed - Opened by Smeds about 1 year ago

#304 - fix: handle list of str when replacing config variables

Pull Request - State: closed - Opened by Smeds about 1 year ago

#303 - ci: remove if statements

Pull Request - State: closed - Opened by Smeds about 1 year ago

#302 - ci: add test build workflow

Pull Request - State: closed - Opened by Smeds about 1 year ago

#301 - chore: release 1.9.0

Pull Request - State: closed - Opened by github-actions[bot] about 1 year ago - 1 comment
Labels: autorelease: tagged

#300 - chore: dev to master

Pull Request - State: closed - Opened by Smeds about 1 year ago

#299 - docs: update hydra-genetics version in docs and templates

Pull Request - State: closed - Opened by Smeds about 1 year ago

#298 - fix: handle events when a file is listed multiple times in the config

Pull Request - State: closed - Opened by Smeds about 1 year ago

#297 - fix: handle case one requested number of reads couldn't be selected

Pull Request - State: closed - Opened by Smeds about 1 year ago

#296 - feat: add test build mkdocs to template

Pull Request - State: closed - Opened by Smeds about 1 year ago

#295 - docs: update hydra-genetics version for simple pipeline

Pull Request - State: closed - Opened by Smeds about 1 year ago

#294 - docs: update env setup to use required python version python3.8 inste…

Pull Request - State: closed - Opened by Smeds about 1 year ago

#293 - chore: release 1.8.1

Pull Request - State: closed - Opened by github-actions[bot] about 1 year ago - 1 comment
Labels: autorelease: tagged

#292 - chore: dev to master

Pull Request - State: closed - Opened by Smeds about 1 year ago

#291 - fix: remove code

Pull Request - State: closed - Opened by Smeds about 1 year ago

#290 - chore: release 1.8.0

Pull Request - State: closed - Opened by github-actions[bot] about 1 year ago - 1 comment
Labels: autorelease: tagged

#289 - chore: dev to master

Pull Request - State: closed - Opened by Smeds about 1 year ago

#288 - feat: make it possible to define links handling fetching data

Pull Request - State: closed - Opened by Smeds about 1 year ago

#287 - fix: reduce memory usage when downloading files

Pull Request - State: closed - Opened by Smeds about 1 year ago

#286 - chore: release 1.7.0

Pull Request - State: closed - Opened by github-actions[bot] about 1 year ago - 1 comment
Labels: autorelease: tagged

#285 - feat: function used to add variable options to a yaml file

Pull Request - State: closed - Opened by Smeds about 1 year ago

#284 - feat: output more information about download/validation for ref files

Pull Request - State: closed - Opened by Smeds over 1 year ago

#283 - refactor: add more logging

Pull Request - State: closed - Opened by Smeds over 1 year ago

#282 - chore: dev to master

Pull Request - State: closed - Opened by Smeds over 1 year ago

#281 - refactor: simplify code and add more logging

Pull Request - State: closed - Opened by Smeds over 1 year ago

#280 - refactor: add more logging messages

Pull Request - State: closed - Opened by Smeds over 1 year ago

#279 - fix: parent folder bug and remove existing folder if it needs updating

Pull Request - State: closed - Opened by Smeds over 1 year ago

#278 - refactor: remove print statment

Pull Request - State: closed - Opened by Smeds over 1 year ago

#277 - feat: update reference fetching

Pull Request - State: closed - Opened by Smeds over 1 year ago

#276 - docs: update rtd links

Pull Request - State: closed - Opened by jonca79 over 1 year ago

#275 - chore: release 1.6.0

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago - 1 comment
Labels: autorelease: tagged

#274 - chore: dev to master

Pull Request - State: closed - Opened by Smeds over 1 year ago