hydra-genetics/hydra-genetics issues and pull requests

#373 - fix: crash if pipeline dir is not a git repo

Pull Request - State: closed - Opened by maehler 5 months ago

#372 - chore: release 3.0.0

Pull Request - State: open - Opened by github-actions[bot] 5 months ago
Labels: autorelease: pending

#371 - docs: Update version number required for hydra-genetics and edited instruct…

Pull Request - State: closed - Opened by camcl 5 months ago

#370 - chore: release 3.0.0

Pull Request - State: closed - Opened by github-actions[bot] 6 months ago
Labels: autorelease: pending

#369 - chore(master): release 3.0.0

Pull Request - State: closed - Opened by Smeds 6 months ago - 1 comment
Labels: autorelease: tagged

#368 - chore: release 3.0.0

Pull Request - State: closed - Opened by github-actions[bot] 6 months ago
Labels: autorelease: pending

#367 - chore: dev to master

Pull Request - State: closed - Opened by Smeds 6 months ago

#366 - fix: handle remote on local file the same

Pull Request - State: closed - Opened by Smeds 6 months ago

#365 - Fix version bug

Pull Request - State: closed - Opened by Smeds 6 months ago

#364 - refactor: remove print

Pull Request - State: closed - Opened by Smeds 6 months ago

#363 - feat: report all region_all variants in cov_and_mut

Pull Request - State: closed - Opened by jonca79 6 months ago

#362 - fix: filter more one docker labels

Pull Request - State: closed - Opened by Smeds 6 months ago

#361 - feat: output software versions into one file

Pull Request - State: closed - Opened by elleira 6 months ago - 1 comment

#360 - chore: release 2.0.1

Pull Request - State: closed - Opened by github-actions[bot] 7 months ago
Labels: autorelease: pending

#359 - fix: convert name_list to set to remove duplicate items

Pull Request - State: closed - Opened by padraicc 7 months ago

#358 - chore(master): release 2.0.1

Pull Request - State: closed - Opened by Smeds 7 months ago - 1 comment
Labels: autorelease: tagged

#357 - chore: release 2.0.1

Pull Request - State: closed - Opened by github-actions[bot] 7 months ago
Labels: autorelease: pending

#356 - chore: dev to master

Pull Request - State: closed - Opened by Smeds 7 months ago

#355 - ci: update release please

Pull Request - State: closed - Opened by Smeds 7 months ago

#354 - fix: name and version extraction from name_and_version split

Pull Request - State: closed - Opened by padraicc 7 months ago

#353 - chore: dev to master

Pull Request - State: closed - Opened by Smeds 7 months ago

#352 - docs: add badge for mkdocs

Pull Request - State: closed - Opened by Smeds 7 months ago

#351 - chore: dev to master

Pull Request - State: closed - Opened by Smeds 7 months ago

#350 - chore: release 2.0.0

Pull Request - State: closed - Opened by github-actions[bot] 7 months ago - 1 comment
Labels: autorelease: tagged

#349 - fix(utils): change container re search pattern

Pull Request - State: closed - Opened by padraicc 7 months ago

#348 - ci: add token to make it possible for please-release to run actions

Pull Request - State: closed - Opened by Smeds 7 months ago

#347 - chore: dev to master

Pull Request - State: closed - Opened by Smeds 8 months ago

#346 - chore: Update software_versions.py

Pull Request - State: closed - Opened by elleira 8 months ago

#345 - fix: fix typo in warning message

Pull Request - State: closed - Opened by padraicc 8 months ago

#344 - feat: Update units.schema.yaml for long read

Pull Request - State: closed - Opened by padraicc 9 months ago

#343 - feat: create input files from long read bam files

Pull Request - State: closed - Opened by padraicc 9 months ago

#342 - docs: update import from tool versions

Pull Request - State: closed - Opened by elleira 9 months ago

#341 - fix: minor updates to pipeline template

Pull Request - State: closed - Opened by Smeds 9 months ago

#340 - chore: dev to master

Pull Request - State: closed - Opened by Smeds 9 months ago

#339 - docs: change filename

Pull Request - State: closed - Opened by Smeds 9 months ago

#338 - chore: release 1.14.0

Pull Request - State: closed - Opened by github-actions[bot] 9 months ago - 1 comment
Labels: autorelease: tagged

#337 - chore: dev to master

Pull Request - State: closed - Opened by Smeds 9 months ago

#336 - docs: add missing variable to example

Pull Request - State: closed - Opened by Smeds 9 months ago

#335 - chore: release 1.13.0

Pull Request - State: closed - Opened by github-actions[bot] 9 months ago - 1 comment
Labels: autorelease: tagged

#334 - chore: dev to master

Pull Request - State: closed - Opened by Smeds 9 months ago

#333 - feat: function used to print pipeline version

Pull Request - State: closed - Opened by Smeds 9 months ago

#332 - feat: add functions used to annotate config with software versions

Pull Request - State: closed - Opened by Smeds 9 months ago

#331 - chore: release 1.12.0

Pull Request - State: closed - Opened by github-actions[bot] 9 months ago - 1 comment
Labels: autorelease: tagged

#330 - chore: dev to master

Pull Request - State: closed - Opened by Smeds 9 months ago

#329 - feat: update handling of reference files

Pull Request - State: closed - Opened by Smeds 10 months ago

#328 - fix: handle tumour content set to 0 when creating sample.tsv

Pull Request - State: closed - Opened by padraicc 10 months ago

#327 - chore: release 1.11.1

Pull Request - State: closed - Opened by github-actions[bot] 10 months ago - 1 comment
Labels: autorelease: tagged

#326 - chore: dev to master

Pull Request - State: closed - Opened by Smeds 10 months ago

#325 - fix: match latest settings format

Pull Request - State: closed - Opened by Smeds 10 months ago

#324 - chore: release 1.11.0

Pull Request - State: closed - Opened by github-actions[bot] 10 months ago - 1 comment
Labels: autorelease: tagged

#323 - chore: dev to master

Pull Request - State: closed - Opened by Smeds 10 months ago

#322 - feat: make it possible to populate samples and units with data from j…

Pull Request - State: closed - Opened by Smeds 10 months ago

#321 - refactor: barcode added

Pull Request - State: closed - Opened by nnneeennn 11 months ago

#320 - refactor: output default values when using --help

Pull Request - State: closed - Opened by elleira 11 months ago

#319 - perf: improve performance and fix minor issue

Pull Request - State: closed - Opened by Smeds 11 months ago

#318 - feat: update snakefmt linter version for pipeline template

Pull Request - State: closed - Opened by Smeds 11 months ago

#317 - chore: release 1.10.2

Pull Request - State: closed - Opened by github-actions[bot] 12 months ago - 1 comment
Labels: autorelease: tagged

#316 - chore: dev to master

Pull Request - State: closed - Opened by jonca79 12 months ago

#315 - fix: return None when empty string in vep annotation

Pull Request - State: closed - Opened by jonca79 12 months ago

#314 - chore: release 1.10.1

Pull Request - State: closed - Opened by github-actions[bot] 12 months ago - 1 comment
Labels: autorelease: tagged

#313 - chore: dev to master

Pull Request - State: closed - Opened by jonca79 12 months ago

#312 - fix: bug in vep annotation handling

Pull Request - State: closed - Opened by jonca79 12 months ago

#311 - chore: release 1.10.0

Pull Request - State: closed - Opened by github-actions[bot] 12 months ago - 1 comment
Labels: autorelease: tagged

#310 - chore: dev to master

Pull Request - State: closed - Opened by Smeds 12 months ago

#309 - ci: update test build workflow

Pull Request - State: closed - Opened by Smeds 12 months ago

#308 - ci: update test build workflow

Pull Request - State: closed - Opened by Smeds 12 months ago

#307 - feat: added handling and selection between multiple transcripts in ho…

Pull Request - State: closed - Opened by jonca79 12 months ago

#306 - chore: release 1.9.1

Pull Request - State: closed - Opened by github-actions[bot] about 1 year ago - 1 comment
Labels: autorelease: tagged