hybsearch/hybsearch issues and pull requests

#280 - Bump json5 from 1.0.1 to 1.0.2

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies, javascript

#279 - Bump qs from 6.5.2 to 6.5.3

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies, javascript

#278 - Bump decode-uri-component from 0.2.0 to 0.2.2

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies, javascript

#277 - Bump numpy from 1.14.2 to 1.22.0

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies, python

#276 - Bump urijs from 1.19.10 to 1.19.11

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#275 - Bump color-string from 1.5.3 to 1.9.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#274 - Bump minimist from 1.2.2 to 1.2.6

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#273 - Bump urijs from 1.19.6 to 1.19.10

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#272 - Bump urijs from 1.19.6 to 1.19.9

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#271 - Bump urijs from 1.19.6 to 1.19.8

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#270 - Bump ajv from 6.10.2 to 6.12.6

Pull Request - State: open - Opened by dependabot[bot] almost 3 years ago
Labels: dependencies

#269 - Bump tmpl from 1.0.4 to 1.0.5

Pull Request - State: open - Opened by dependabot[bot] about 3 years ago
Labels: dependencies

#268 - Bump path-parse from 1.0.6 to 1.0.7

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#267 - Bump urijs from 1.19.6 to 1.19.7

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#266 - Bump ws from 7.2.1 to 7.4.6

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#265 - Bump ws from 7.2.1 to 7.4.5

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#264 - Bump browserslist from 4.8.3 to 4.16.6

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#263 - Bump hosted-git-info from 2.8.5 to 2.8.9

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#262 - Bump lodash from 4.17.19 to 4.17.21

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#261 - Bump y18n from 4.0.0 to 4.0.1

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#260 - Bump dot-prop from 4.2.0 to 4.2.1

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#259 - Bump elliptic from 6.5.2 to 6.5.4

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#258 - Bump urijs from 1.19.2 to 1.19.6

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#257 - Bump urijs from 1.19.2 to 1.19.5

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies

#256 - Bump elliptic from 6.5.2 to 6.5.3

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies

#255 - Bump lodash from 4.17.15 to 4.17.19

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago
Labels: dependencies

#254 - Bump minimist from 1.2.2 to 1.2.3

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies

#253 - Bump acorn from 5.7.3 to 5.7.4

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago
Labels: dependencies

#252 - Bump minimist from 1.2.0 to 1.2.2

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago
Labels: dependencies

#251 - Bump handlebars from 4.1.2 to 4.5.3

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago
Labels: dependencies

#250 - Bump safer-eval from 1.3.2 to 1.3.5

Pull Request - State: closed - Opened by dependabot[bot] about 5 years ago
Labels: dependencies

#249 - Bump mixin-deep from 1.3.1 to 1.3.2

Pull Request - State: closed - Opened by dependabot[bot] about 5 years ago
Labels: dependencies

#248 - Bump eslint-utils from 1.3.1 to 1.4.2

Pull Request - State: closed - Opened by dependabot[bot] about 5 years ago
Labels: dependencies

#247 - Bump lodash from 4.17.11 to 4.17.13

Pull Request - State: closed - Opened by dependabot[bot] over 5 years ago
Labels: dependencies

#246 - Automatically pick the hosting server as the websocket source

Pull Request - State: closed - Opened by hawkrives over 5 years ago

#245 - Bump d3 from 3.5.17 to 5.9.2

Pull Request - State: open - Opened by dependabot-preview[bot] over 5 years ago
Labels: dependencies, javascript

#244 - Bump ws from 5.2.2 to 7.0.0

Pull Request - State: closed - Opened by dependabot-preview[bot] over 5 years ago - 1 comment
Labels: dependencies, javascript

#243 - Expose JML and MrBayes config to the UI

Pull Request - State: closed - Opened by hawkrives over 5 years ago

#242 - Update deps

Pull Request - State: closed - Opened by hawkrives over 5 years ago

#241 - Expose JML and MrBayes parameters to the UI

Issue - State: closed - Opened by hawkrives over 5 years ago

#240 - Render Hybsearch UI on the server

Pull Request - State: closed - Opened by hawkrives over 5 years ago - 1 comment

#239 - Update utf-8-validate to version 5.0.1

Pull Request - State: closed - Opened by rye about 6 years ago

#238 - Update bufferutil to version 4.0.0

Pull Request - State: closed - Opened by rye about 6 years ago

#237 - Update electron-updater to 3.1.2

Pull Request - State: closed - Opened by rye about 6 years ago

#236 - Update electron-is-dev to version 1.0.1

Pull Request - State: closed - Opened by rye about 6 years ago

#235 - Update pretty-ms to version 4.0.0

Pull Request - State: closed - Opened by rye about 6 years ago

#234 - Update electron to 3.0.3

Pull Request - State: closed - Opened by rye about 6 years ago

#233 - Update spectron to 4.0.0

Pull Request - State: closed - Opened by rye about 6 years ago

#232 - Package Updates

Pull Request - State: closed - Opened by rye about 6 years ago - 6 comments

#231 - Fix require in hyb-clustal

Pull Request - State: closed - Opened by rye about 6 years ago - 1 comment

#230 - CircleCI electron-building speedups and cleanups

Pull Request - State: closed - Opened by hawkrives over 6 years ago
Labels: ready for review

#229 - Initial pruneNewick cleanups

Pull Request - State: closed - Opened by hawkrives over 6 years ago

#228 - More Ent cleanups

Pull Request - State: closed - Opened by hawkrives over 6 years ago

#227 - Remove "sp." entries from FASTA source files

Pull Request - State: closed - Opened by hawkrives over 6 years ago

#226 - Release v4.0.0, Release Candidate ㆔

Pull Request - State: closed - Opened by hawkrives over 6 years ago

#225 - Change the default server to thing3 in production

Pull Request - State: closed - Opened by hawkrives over 6 years ago

#224 - Fix fasta input files

Pull Request - State: closed - Opened by hawkrives over 6 years ago

#223 - fix get-ip on windows

Pull Request - State: closed - Opened by hawkrives over 6 years ago

#222 - Implement search boxen

Issue - State: open - Opened by hawkrives over 6 years ago
Labels: enhancement

#221 - Change default server for release builds to thing3

Issue - State: closed - Opened by hawkrives over 6 years ago

#220 - Handle transient IP address lookup failures

Issue - State: closed - Opened by hawkrives over 6 years ago

#219 - Remove linux build from CI

Pull Request - State: closed - Opened by hawkrives over 6 years ago

#218 - Release v4.0.0, Release Candidate ②

Pull Request - State: closed - Opened by hawkrives over 6 years ago

#217 - Faster beast tests on Circle

Pull Request - State: closed - Opened by hawkrives over 6 years ago

#216 - Delay creating the result blocks until the button is clicked

Pull Request - State: closed - Opened by hawkrives over 6 years ago

#215 - Release v4.0.0, Release Candidate ❶

Pull Request - State: closed - Opened by hawkrives over 6 years ago

#214 - Update hash-names tests

Pull Request - State: closed - Opened by hawkrives over 6 years ago

#213 - Ent additional check

Pull Request - State: closed - Opened by OmarShehata over 6 years ago

#212 - Starting some Ent cleanups

Pull Request - State: closed - Opened by hawkrives over 6 years ago
Labels: ready for review

#211 - Ent filter

Pull Request - State: closed - Opened by OmarShehata over 6 years ago

#210 - Set outlierRemovalPercentage to apply to the proper spot

Pull Request - State: closed - Opened by hawkrives over 6 years ago

#209 - [WIP] [NO-MERGE] [DON'T MERGE THIS PR] Parallel BEAST?

Pull Request - State: closed - Opened by hawkrives over 6 years ago

#208 - Add menus to the Electron app (and support multiple windows)

Pull Request - State: closed - Opened by hawkrives over 6 years ago
Labels: enhancement, ready for review

#207 - Update deps

Pull Request - State: closed - Opened by hawkrives over 6 years ago
Labels: ready for review

#206 - Allow viewing the results of each step

Pull Request - State: closed - Opened by hawkrives over 6 years ago

#205 - Add job resumption support

Pull Request - State: closed - Opened by hawkrives over 6 years ago

#204 - Highlight significant nonmonophyly in a separate results box

Pull Request - State: closed - Opened by hawkrives over 6 years ago

#203 - Pass options to pipeline

Pull Request - State: closed - Opened by hawkrives over 6 years ago - 1 comment

#202 - Fix a bug where the list of files would double in length

Pull Request - State: closed - Opened by hawkrives over 6 years ago

#201 - Add test samples from felidae

Pull Request - State: closed - Opened by hawkrives over 6 years ago

#200 - Return the "diffPercent" value to the client for rendering

Pull Request - State: closed - Opened by hawkrives over 6 years ago - 1 comment
Labels: ready for review

#199 - Release v4.0.0 (beta 27)

Pull Request - State: closed - Opened by hawkrives over 6 years ago

#198 - Add "mbnb-legacy" pipeline to run non-filtering Ent code

Pull Request - State: closed - Opened by hawkrives over 6 years ago

#197 - Revised Algorithm for Nonomonphyly

Pull Request - State: closed - Opened by OmarShehata over 6 years ago

#196 - Update pkgs

Pull Request - State: closed - Opened by hawkrives over 6 years ago

#195 - Release v4.0.0 (beta 26)

Pull Request - State: closed - Opened by hawkrives over 6 years ago

#194 - un-hide the tree when loading a json tree

Pull Request - State: closed - Opened by hawkrives over 6 years ago

#193 - Record sequence diff% when pruning outliers

Issue - State: closed - Opened by hawkrives over 6 years ago

#191 - Implement Newick branch pruning

Pull Request - State: closed - Opened by hawkrives over 6 years ago - 2 comments

#186 - Centralize test data files

Pull Request - State: closed - Opened by hawkrives over 6 years ago - 2 comments

#176 - Fix copying/pasting into bundled Electron app

Issue - State: closed - Opened by hawkrives over 6 years ago

#173 - Remove outliers from jml input

Pull Request - State: closed - Opened by hawkrives over 6 years ago - 1 comment

#165 - Add final results box to highlight significant _and_ nonmonophyletic results

Issue - State: closed - Opened by hawkrives over 6 years ago - 1 comment

#163 - Additional check for reciprocal nonmonophyly

Issue - State: open - Opened by OmarShehata over 6 years ago

#132 - Allow viewing the results of each step by clicking the progress icon

Issue - State: closed - Opened by hawkrives over 6 years ago
Labels: enhancement

#115 - Update the Newick graph based off of the JML output

Issue - State: open - Opened by hawkrives over 6 years ago - 4 comments
Labels: enhancement

#110 - docker-compose: Mount /tmp somewhere

Issue - State: closed - Opened by rye over 6 years ago - 1 comment
Labels: enhancement

#98 - Client/server enhancement ideas

Issue - State: open - Opened by hawkrives over 6 years ago - 3 comments

#51 - Misc notes from 2018/03/07

Issue - State: open - Opened by hawkrives over 6 years ago

#49 - Fix "Use Newick Tree" option

Issue - State: open - Opened by hawkrives over 6 years ago - 2 comments
Labels: bug

GitHub / hybsearch/hybsearch issues and pull requests