hugheylab/seeker issues and pull requests

#47 - added new rhub and more graceful error handling.

Pull Request - State: closed - Opened by jakejh 3 months ago

#46 - Update DESCRIPTION

Pull Request - State: closed - Opened by jacorvar 9 months ago - 1 comment

#45 - Update platform_cdf.csv

Pull Request - State: closed - Opened by jacorvar 10 months ago - 2 comments

#44 - fixed processing of arrayexpress data.

Pull Request - State: closed - Opened by jakejh 12 months ago - 1 comment

#43 - Update array_utils.R

Pull Request - State: closed - Opened by jacorvar about 1 year ago - 2 comments

#42 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] about 2 years ago
Labels: lint

#41 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] about 2 years ago
Labels: lint

#40 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] about 2 years ago
Labels: lint

#39 - 1.0.8 cran revisions

Pull Request - State: closed - Opened by JSchoenbachler over 2 years ago - 6 comments

#38 - 1.0.5 cran revisions

Pull Request - State: closed - Opened by JSchoenbachler over 2 years ago - 7 comments

#37 - seeker 1.0.5 CRAN feedback

Issue - State: closed - Opened by JSchoenbachler over 2 years ago - 3 comments

#36 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#35 - added option to specify directory in which to create or modify .Rprofile

Pull Request - State: closed - Opened by jakejh over 2 years ago - 2 comments

#34 - seekerArray argument, test, and vignette updates

Pull Request - State: closed - Opened by JSchoenbachler over 2 years ago - 7 comments

#33 - Save original metadata file.

Pull Request - State: closed - Opened by JSchoenbachler over 2 years ago - 2 comments

#32 - Cran prep

Pull Request - State: closed - Opened by JSchoenbachler over 2 years ago - 18 comments

#31 - need to also save version of SRA Toolkit

Issue - State: closed - Opened by jakejh over 2 years ago - 1 comment

#30 - Fix conda environment activate

Pull Request - State: closed - Opened by JSchoenbachler over 2 years ago - 5 comments

#29 - switched species to organism and added checks for parallel backend.

Pull Request - State: closed - Opened by jakejh over 2 years ago - 3 comments

#28 - install system dependencies

Pull Request - State: closed - Opened by jakejh over 2 years ago - 21 comments

#27 - Install system deps function

Pull Request - State: closed - Opened by JSchoenbachler over 2 years ago - 19 comments

#26 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#25 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#24 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#23 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#22 - switched to using sra toolkit instead of aspera. fingers crossed.

Pull Request - State: closed - Opened by jakejh over 2 years ago - 1 comment

#21 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#20 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#19 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#18 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#17 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#16 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago - 3 comments
Labels: lint

#15 - Skip steps if commands are missing

Pull Request - State: closed - Opened by JSchoenbachler almost 3 years ago - 6 comments

#14 - Array test

Pull Request - State: closed - Opened by JSchoenbachler almost 3 years ago - 1 comment

#13 - Check Microarray dataset is a good with Jake.

Issue - State: closed - Opened by JSchoenbachler almost 3 years ago - 4 comments

#12 - drat-deploy failing workflow

Issue - State: closed - Opened by JSchoenbachler almost 3 years ago

#11 - Test workflows merge

Pull Request - State: closed - Opened by JSchoenbachler almost 3 years ago - 23 comments

#10 - Test workflows

Pull Request - State: closed - Opened by JSchoenbachler almost 3 years ago - 4 comments

#9 - checkmate::assert inconsistent output

Issue - State: closed - Opened by JSchoenbachler almost 3 years ago - 4 comments

#8 - Test data directory is "data" in tests from Jake and "test_data" in tests from Josh.

Issue - State: closed - Opened by JSchoenbachler almost 3 years ago - 2 comments

#7 - getTx2gene Test Ensembl Issues

Issue - State: closed - Opened by JSchoenbachler almost 3 years ago - 2 comments

#6 - Missing `file.path` in many places

Issue - State: closed - Opened by jakejh almost 3 years ago - 1 comment

#5 - Adding changes from master branch

Pull Request - State: closed - Opened by JSchoenbachler almost 3 years ago - 4 comments

#4 - added ability to specify transcript-to-gene mapping in pre-existing f…

Pull Request - State: closed - Opened by jakejh almost 3 years ago - 1 comment

#3 - Add array functions into test-workflows

Pull Request - State: closed - Opened by JSchoenbachler almost 3 years ago

#2 - Array

Pull Request - State: closed - Opened by jakejh almost 3 years ago

#1 - Test workflows Pull 1

Pull Request - State: closed - Opened by JSchoenbachler about 3 years ago

GitHub / hugheylab/seeker issues and pull requests