Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / hugheylab/phers issues and pull requests

#95 - Incomplete ICD-Phecode map / needs updating

Issue - State: open - Opened by chrisodhams 3 months ago

#94 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: lint

#93 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: lint

#92 - switch speedglm with glm

Pull Request - State: closed - Opened by arefnel over 1 year ago - 1 comment

#91 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] almost 2 years ago
Labels: lint

#90 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] almost 2 years ago
Labels: lint

#89 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] almost 2 years ago
Labels: lint

#88 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] almost 2 years ago
Labels: lint

#87 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] almost 2 years ago
Labels: lint

#86 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] almost 2 years ago
Labels: lint

#85 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] almost 2 years ago
Labels: lint

#84 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] almost 2 years ago
Labels: lint

#83 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] almost 2 years ago
Labels: lint

#82 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] almost 2 years ago
Labels: lint

#81 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] almost 2 years ago
Labels: lint

#80 - negative weights

Pull Request - State: closed - Opened by arefnel about 2 years ago - 15 comments

#79 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] about 2 years ago
Labels: lint

#78 - Age aware phers

Pull Request - State: closed - Opened by arefnel about 2 years ago - 3 comments

#77 - hpo phecode map version

Pull Request - State: closed - Opened by arefnel about 2 years ago - 2 comments

#76 - various refinements, see news.

Pull Request - State: closed - Opened by jakejh over 2 years ago - 1 comment

#75 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#74 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#73 - revised code and documentation.

Pull Request - State: closed - Opened by jakejh over 2 years ago - 3 comments

#72 - update vignette

Issue - State: closed - Opened by jakejh over 2 years ago - 1 comment

#71 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#70 - Why `entry_date` instead of just `date`?

Issue - State: closed - Opened by jakejh over 2 years ago

#69 - update documentation for getGeneticAssociations

Issue - State: closed - Opened by jakejh over 2 years ago - 1 comment

#68 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#67 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#66 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#65 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#64 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#63 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#62 - BEDMatrix instance has been unmapped.

Issue - State: closed - Opened by arefnel over 2 years ago - 1 comment

#61 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#60 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#59 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#58 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#57 - non-ASCII strings in icdPhecodeMap and diseaseHpoMap

Issue - State: closed - Opened by arefnel over 2 years ago - 1 comment

#56 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#55 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#53 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#52 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#51 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#50 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#49 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#48 - changing error message for assertSubset()

Issue - State: closed - Opened by arefnel over 2 years ago - 3 comments

#47 - using nomatch for the anti join in getPhecodeOccurrences()

Issue - State: closed - Opened by arefnel over 2 years ago - 1 comment

#46 - using ignore_attr in tests

Issue - State: closed - Opened by arefnel over 2 years ago - 1 comment

#45 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#44 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#43 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#42 - suggested revisions to overarching phers function

Issue - State: closed - Opened by jakejh over 2 years ago - 4 comments

#41 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#40 - Add dominant and recessive models to getGeneticAssociations()

Issue - State: closed - Opened by arefnel over 2 years ago - 1 comment

#39 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#38 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#37 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#36 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#35 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#34 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#33 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#32 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#31 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#30 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#29 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#28 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint

#27 - lintr found issues with code

Issue - State: closed - Opened by github-actions[bot] over 2 years ago
Labels: lint-styling

#26 - Josh code review examples

Pull Request - State: closed - Opened by JSchoenbachler over 2 years ago - 3 comments

#25 - Josh code review

Pull Request - State: closed - Opened by JSchoenbachler over 2 years ago - 1 comment

#23 - Add website/version/date to the documentation for all the maps

Issue - State: closed - Opened by arefnel over 2 years ago - 1 comment

#22 - Freeze all the maps

Issue - State: closed - Opened by arefnel over 2 years ago - 1 comment

#21 - Netezza query to get SD data for pre-calculated weights

Issue - State: closed - Opened by arefnel over 2 years ago - 1 comment

#20 - Simulate PLINK bed files and use BEDmatrix in getGeneticAssociations()

Issue - State: closed - Opened by arefnel over 2 years ago - 1 comment

#19 - Add function that goes through the entire PheRS workflow

Issue - State: closed - Opened by arefnel over 2 years ago - 1 comment

#18 - Add examples to documentation

Issue - State: closed - Opened by arefnel over 2 years ago - 1 comment

#17 - Add the option to remove diagnostic ICD codes in getPhecodeOccurrences

Issue - State: closed - Opened by arefnel over 2 years ago - 1 comment

#16 - simplify code in diseasePhecodeMap

Issue - State: closed - Opened by jakejh over 2 years ago - 1 comment

#15 - simplify function to map diseases to phecodes

Issue - State: closed - Opened by jakejh over 2 years ago - 1 comment

#14 - positive control function

Pull Request - State: closed - Opened by arefnel over 2 years ago - 3 comments

#13 - genotype association function

Pull Request - State: closed - Opened by arefnel over 2 years ago - 10 comments

#12 - various revisions.

Pull Request - State: closed - Opened by jakejh over 2 years ago - 1 comment

#11 - 2nd Code Review

Issue - State: closed - Opened by JSchoenbachler over 2 years ago - 22 comments

#10 - Add calculation of residual scores

Issue - State: closed - Opened by jakejh over 2 years ago - 3 comments

#9 - Add existing weights file and mapping files to package

Issue - State: closed - Opened by JSchoenbachler over 2 years ago - 1 comment

#8 - Discuss and create outline for Updated PheRS Model

Issue - State: closed - Opened by JSchoenbachler over 2 years ago - 1 comment

#7 - Get approval from Jake and enable drat deployment

Issue - State: closed - Opened by JSchoenbachler over 2 years ago - 1 comment

#6 - Write tests

Issue - State: closed - Opened by JSchoenbachler over 2 years ago

#4 - Create outline of package functionality.

Issue - State: closed - Opened by JSchoenbachler over 2 years ago

#3 - Add GitHub Actions workflows

Issue - State: closed - Opened by JSchoenbachler over 2 years ago - 1 comment

#2 - Review initial code commit

Issue - State: closed - Opened by JSchoenbachler over 2 years ago - 4 comments

#1 - Initial commit of PheRS Code

Issue - State: closed - Opened by JSchoenbachler over 2 years ago - 1 comment