Ecosyste.ms: Issues

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GitHub / htem/FANC_auto_recon issues and pull requests

#35 - Add logging for annotation deletions via the slackbot

Issue - State: closed - Opened by jasper-tms 7 months ago

#34 - Use query service hosted at hms.

Pull Request - State: closed - Opened by perlman 9 months ago

#33 - Refactor slackbots to use the Events API through websockets

Pull Request - State: closed - Opened by jasper-tms about 1 year ago

#32 - Be more explicit about and improve handling of annotation units

Pull Request - State: closed - Opened by jasper-tms about 1 year ago

#30 - Write `get_anchor_point`

Issue - State: closed - Opened by jasper-tms over 1 year ago - 7 comments

#29 - Add nuclei layer when previewing soma table

Pull Request - State: closed - Opened by sumiya-kuroda over 1 year ago
Labels: enhancement

#28 - Fix potential bug with cave authentication

Pull Request - State: closed - Opened by sibocw over 1 year ago - 4 comments
Labels: documentation, wontfix

#27 - Remove invalid (false positive) nucleus IDs from the nucleus segmentation

Issue - State: closed - Opened by jasper-tms over 1 year ago - 6 comments

#26 - Reorganize nuclei_prediction folder

Pull Request - State: closed - Opened by sumiya-kuroda almost 2 years ago - 2 comments
Labels: enhancement

#25 - Neuropil identification for all somas

Issue - State: closed - Opened by sibocw almost 2 years ago - 2 comments
Labels: question

#24 - Add soma upload functions +α

Pull Request - State: closed - Opened by sumiya-kuroda almost 2 years ago - 1 comment
Labels: enhancement

#23 - Migrate the FANC Community Info Home Page to this repo's wiki

Issue - State: closed - Opened by jasper-tms almost 2 years ago - 1 comment

#21 - Implement a `warp_to_template=True` option in `plot_neurons`

Issue - State: closed - Opened by jasper-tms almost 2 years ago

#20 - Write a function for uploading new somas

Issue - State: closed - Opened by jasper-tms almost 2 years ago - 9 comments
Labels: enhancement

#19 - Reorganize

Pull Request - State: closed - Opened by jasper-tms almost 2 years ago - 1 comment

#18 - Improve render_scene() to more user-frinedly and flexible

Issue - State: closed - Opened by sumiya-kuroda almost 2 years ago - 11 comments
Labels: enhancement

#16 - Plot scale bar & volume outlines with neuron meshes

Pull Request - State: closed - Opened by sumiya-kuroda over 2 years ago - 3 comments
Labels: enhancement

#15 - Proofreading update

Pull Request - State: closed - Opened by sumiya-kuroda over 2 years ago - 1 comment
Labels: enhancement

#14 - Improved performance for center and bbox calclulation

Pull Request - State: closed - Opened by sumiya-kuroda over 2 years ago
Labels: enhancement, lowpriority

#13 - Added tools for large scale merging operation

Pull Request - State: closed - Opened by sumiya-kuroda over 2 years ago
Labels: enhancement

#12 - Update auth and package names for CAVEclient

Pull Request - State: closed - Opened by jasper-tms over 2 years ago

#11 - Potential Performance Improvement in Nuclei Detection

Issue - State: closed - Opened by william-silversmith over 2 years ago - 2 comments

#10 - nuclei_predicition for soma_aug2021

Pull Request - State: closed - Opened by sumiya-kuroda almost 3 years ago - 1 comment
Labels: enhancement

#9 - connectomics general tutorial

Pull Request - State: closed - Opened by lelabbady about 3 years ago - 1 comment

#8 - Make all catmaid connections use pymaid_addons

Issue - State: closed - Opened by jasper-tms over 3 years ago - 1 comment

#7 - Add a threshold to render_fragments

Issue - State: closed - Opened by jasper-tms over 3 years ago - 1 comment

#5 - Faster rootID lookups

Issue - State: closed - Opened by jasper-tms over 3 years ago - 4 comments

#3 - fanc3_to_4 sometimes stalls? When only a single point is left?

Issue - State: closed - Opened by jasper-tms over 3 years ago - 1 comment

#2 - Render a more feature-rich neuroglancer scene programmatically

Issue - State: closed - Opened by jasper-tms over 3 years ago - 2 comments

#1 - Render skeletons into a neuroglancer annotation layer in skel2seg

Issue - State: closed - Opened by jasper-tms over 3 years ago - 1 comment