Ecosyste.ms: Issues

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GitHub / hpcflow/hpcflow-new issues and pull requests

#734 - Add in the missing extra permissions grants

Pull Request - State: open - Opened by dkfellows 10 days ago
Labels: bug, CI

#733 - Adjust the isinstance checks

Pull Request - State: closed - Opened by dkfellows 12 days ago - 2 comments
Labels: bug, schedulers

#732 - Support generating sequences on multiple paths that are dependent in some way

Issue - State: open - Opened by aplowman 12 days ago
Labels: enhancement, core

#731 - Support generating sequences via latin hypercube sampling

Issue - State: open - Opened by aplowman 12 days ago - 1 comment
Labels: enhancement, core

#730 - Preparing for Zarr 3

Pull Request - State: closed - Opened by dkfellows 18 days ago - 1 comment
Labels: maintenance

#729 - Prepare for Zarr 3

Pull Request - State: closed - Opened by dkfellows 18 days ago - 1 comment

#728 - Update to support Python 3.13

Pull Request - State: open - Opened by dkfellows 19 days ago - 1 comment
Labels: good first issue, maintenance

#727 - Improve testing of `Scheduler.process_resources`

Issue - State: open - Opened by aplowman 23 days ago
Labels: schedulers

#726 - Move over to using workflows from github-support

Pull Request - State: closed - Opened by dkfellows 26 days ago
Labels: CI

#725 - Move over to using actions from new location

Pull Request - State: closed - Opened by dkfellows 26 days ago
Labels: CI

#724 - Unable to submit workflows on HPC; problematic `isinstance` checks with `QueuedScheduler`

Issue - State: closed - Opened by aplowman about 1 month ago - 2 comments
Labels: bug

#723 - Scheduler confusion on UoM CSF3?

Issue - State: closed - Opened by aplowman about 1 month ago - 1 comment

#722 - Support moving data by pickling

Issue - State: open - Opened by dkfellows about 1 month ago - 1 comment
Labels: actions

#721 - Fix logic when using sge_parallel_env with 1 core

Pull Request - State: closed - Opened by gcapes about 1 month ago - 2 comments
Labels: bug, schedulers, SGE

#720 - Improvements to github workflows

Pull Request - State: closed - Opened by dkfellows about 2 months ago - 3 comments
Labels: CI

#719 - Record contributors somehow

Issue - State: open - Opened by aplowman about 2 months ago
Labels: documentation

#718 - Stop a minor fight over syntax of (Github) workflows

Pull Request - State: closed - Opened by dkfellows about 2 months ago
Labels: CI

#717 - Ability to generate inputs from statistical distributions

Issue - State: open - Opened by aplowman about 2 months ago
Labels: enhancement

#716 - Support Python 3.13

Issue - State: open - Opened by aplowman about 2 months ago - 1 comment

#715 - Error requesting SGE_parallel_env

Issue - State: closed - Opened by gcapes about 2 months ago - 3 comments
Labels: bug

#714 - Detect errors in hpcflow internal calls

Issue - State: open - Opened by dkfellows about 2 months ago - 1 comment
Labels: bug

#713 - Store some jobscript metadata oustide of `.zattrs`

Issue - State: open - Opened by aplowman 2 months ago - 1 comment
Labels: bug, zarr, submission, persistence

#712 - refactor: make some util funcs reusable in MatFlow

Pull Request - State: closed - Opened by aplowman 2 months ago

#711 - Support the concept of inheritance within environments

Issue - State: open - Opened by aplowman 2 months ago
Labels: enhancement, schedulers, submission, task-schemas, actions

#710 - Refactor/jobscript

Pull Request - State: open - Opened by aplowman 2 months ago

#709 - fix: missing GHA updates!

Pull Request - State: closed - Opened by aplowman 2 months ago

#708 - fix: fix release workflow

Pull Request - State: closed - Opened by aplowman 2 months ago

#707 - fix: try to fix compression of centos pyinstaller directory build

Pull Request - State: closed - Opened by aplowman 2 months ago

#706 - Fix/centos

Pull Request - State: closed - Opened by aplowman 2 months ago

#705 - Human-readable template component docs

Pull Request - State: closed - Opened by dkfellows 2 months ago - 2 comments
Labels: documentation

#704 - More docs in template components

Issue - State: closed - Opened by dkfellows 3 months ago

#703 - fix: bump ruamel.yaml

Pull Request - State: closed - Opened by aplowman 3 months ago

#702 - Remove Python 3.8 support

Pull Request - State: closed - Opened by dkfellows 4 months ago - 2 comments
Labels: CI, maintenance

#701 - Python 3.8 End of Life

Issue - State: closed - Opened by dkfellows 4 months ago
Labels: documentation, CI

#700 - Proposed citation descriptor for hpcflow

Pull Request - State: closed - Opened by dkfellows 5 months ago
Labels: documentation, enhancement

#699 - Documentation improvements

Pull Request - State: closed - Opened by dkfellows 7 months ago - 1 comment
Labels: documentation, enhancement

#698 - Typecheck with mypy

Pull Request - State: closed - Opened by dkfellows 7 months ago - 4 comments
Labels: enhancement

#697 - Add `Workflow.rechunk` method

Pull Request - State: closed - Opened by aplowman 7 months ago

#696 - CentOS GH actions workflows failure due to recent node version change

Issue - State: closed - Opened by aplowman 7 months ago - 3 comments
Labels: CI

#695 - Idea: Persist to DB

Issue - State: closed - Opened by dkfellows 7 months ago - 2 comments
Labels: persistence

#694 - Typechecking with mypy

Pull Request - State: closed - Opened by dkfellows 8 months ago - 5 comments

#693 - Check if run outputs have been set when determining run status

Issue - State: open - Opened by aplowman 8 months ago
Labels: error handling, actions

#692 - MessagePack does not support arbitrarily large integers

Issue - State: open - Opened by aplowman 8 months ago
Labels: bug, zarr, persistence

#691 - Sets aren't ordered

Issue - State: open - Opened by dkfellows 8 months ago - 2 comments
Labels: bug

#690 - More optimisations, some loop-related

Pull Request - State: closed - Opened by aplowman 9 months ago - 1 comment

#689 - Can't read schema_parameters or actions of Element

Issue - State: open - Opened by dkfellows 9 months ago - 4 comments

#687 - Document potential performance issues caused by Windows Defender

Issue - State: open - Opened by aplowman 9 months ago
Labels: documentation

#686 - Speed up `WorkflowLoop.add_iteration`

Pull Request - State: closed - Opened by aplowman 9 months ago

#685 - `WorkflowLoop.add_iteration` is too slow

Issue - State: open - Opened by aplowman 9 months ago
Labels: optimisation

#684 - Option to cast Zarr arrays to Numpy arrays when passing input parameters to Python scripts

Issue - State: open - Opened by aplowman 9 months ago
Labels: enhancement, zarr

#682 - Check the types

Issue - State: closed - Opened by dkfellows 9 months ago - 2 comments

#681 - fix: restrict Zarr version to workaround #680

Pull Request - State: closed - Opened by aplowman 9 months ago

#680 - Tests failing with newly-released Zarr v2.18.0

Issue - State: closed - Opened by aplowman 9 months ago - 1 comment
Labels: bug, CI, zarr

#679 - fix nested loops

Pull Request - State: closed - Opened by aplowman 9 months ago

#678 - Test and fix nested loops

Issue - State: open - Opened by aplowman 9 months ago - 1 comment
Labels: bug, documentation, core

#677 - fix: fix failing MacOS GHA test by marking as expected to fail

Pull Request - State: closed - Opened by aplowman 9 months ago

#676 - fix: missing endraw again

Pull Request - State: closed - Opened by aplowman 9 months ago

#675 - Fix/GitHub rate limit

Pull Request - State: closed - Opened by aplowman 9 months ago

#674 - GitHub rate limit exceeded in tests

Issue - State: closed - Opened by aplowman 9 months ago - 3 comments
Labels: CI

#673 - Support multi-element execution within Python scripts

Issue - State: open - Opened by aplowman 9 months ago - 1 comment
Labels: enhancement, submission, actions, optimisation

#672 - Fix/input sources

Pull Request - State: closed - Opened by aplowman 9 months ago

#670 - Reduce overhead introduced by hpcflow in jobscripts

Issue - State: open - Opened by aplowman 9 months ago - 3 comments
Labels: submission, optimisation

#669 - Consider maximum allowed job array size when submitting workflows

Issue - State: open - Opened by aplowman 9 months ago
Labels: schedulers, SLURM, SGE

#667 - Excessive metadata array reads in `Workflow.write_commands`

Issue - State: open - Opened by aplowman 9 months ago - 1 comment
Labels: bug, zarr, persistence

#666 - Group elements by unique action states in `show --full` command

Issue - State: open - Opened by aplowman 9 months ago
Labels: show-command

#665 - `show` command doesn't use correct time zone for start and end times

Issue - State: open - Opened by aplowman 10 months ago
Labels: bug, show-command

#664 - `show` command shows submissions have an end time when they are still running

Issue - State: open - Opened by aplowman 10 months ago
Labels: bug, show-command

#663 - Find a workaround for uploading artifacts from CentOS docker image before November

Issue - State: closed - Opened by aplowman 10 months ago - 1 comment
Labels: CI

#661 - build: update GHAs to fix deprecation warnings

Pull Request - State: closed - Opened by aplowman 10 months ago

#660 - build: update GHAs to fix deprecation warnings [skip release]

Pull Request - State: closed - Opened by aplowman 10 months ago

#659 - Various deprecation warnings in GHA workflows

Issue - State: closed - Opened by aplowman 10 months ago - 3 comments
Labels: CI

#657 - Problems with macos-latest GHA runners

Issue - State: closed - Opened by aplowman 10 months ago - 2 comments
Labels: CI

#656 - Various fixes for using multiple element sets within a task

Pull Request - State: closed - Opened by aplowman 10 months ago

#655 - Support `element_idx` argument in `InputSource` with `source_type="task"`

Issue - State: open - Opened by aplowman 10 months ago
Labels: input-sources

#654 - Support rules in `Command`s

Pull Request - State: closed - Opened by aplowman 10 months ago

#652 - Feat/multi envs

Pull Request - State: closed - Opened by aplowman 10 months ago

#650 - Optimise/show

Pull Request - State: closed - Opened by aplowman 10 months ago

#648 - Cache submission start times in the known submissions file

Issue - State: open - Opened by aplowman 11 months ago
Labels: show-command, optimisation

#647 - Consider whether we should allow forming element groups on parameters from upstream tasks

Issue - State: open - Opened by aplowman 11 months ago
Labels: imported-from-old-code

#646 - Consider whether we should allow forming element groups on parameters from upstream tasks

Issue - State: open - Opened by aplowman 11 months ago
Labels: imported-from-old-code

#645 - Allow merging imported elements with those generated from a task that produces the same outputs

Issue - State: open - Opened by aplowman 11 months ago
Labels: imported-from-old-code

#641 - Support archive to OneDrive

Issue - State: open - Opened by aplowman 11 months ago - 1 comment
Labels: imported-from-old-code

#623 - Optimise/io

Pull Request - State: closed - Opened by aplowman 11 months ago

#610 - Optimise imports

Issue - State: closed - Opened by aplowman 11 months ago
Labels: optimisation

#609 - `NullScheduler.options` should be passed as a dict instead of a list

Issue - State: open - Opened by aplowman 12 months ago - 1 comment
Labels: schedulers, SLURM, SGE

#579 - Ability to generate input values and sequences from various statistical distributions

Issue - State: open - Opened by aplowman about 1 year ago - 1 comment
Labels: enhancement

#495 - Add option to include the `execute` directory when running `Workflow.to_zip`

Issue - State: open - Opened by aplowman over 1 year ago - 1 comment
Labels: enhancement, zip-command

#376 - [FUTURE] Remove support for Python 3.9

Issue - State: open - Opened by cjfullerton almost 2 years ago - 1 comment

#288 - Is it possible to have multiple entry points defined in Pyinstaller?

Issue - State: open - Opened by aplowman about 2 years ago - 1 comment
Labels: helper, backlog

#287 - Zarr spec v3 compatibility

Issue - State: open - Opened by aplowman about 2 years ago
Labels: backlog, zarr