Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / hopkinsidd/covidscenariopipeline issues and pull requests

#502 - Slurm postprocess

Pull Request - State: open - Opened by saraloo almost 2 years ago - 4 comments

#501 - proof of concept of docker working form it's own directory

Pull Request - State: open - Opened by jcblemai almost 2 years ago

#500 - local_install.R fails on Docker version

Issue - State: open - Opened by harryhoch almost 2 years ago - 2 comments

#499 - Enable projection outside of the date range used for inference

Issue - State: open - Opened by jcblemai about 2 years ago
Labels: enhancement

#498 - inference: check if file exist before deleting it (for log sanity)

Issue - State: open - Opened by jcblemai about 2 years ago
Labels: enhancement

#497 - Add subsetting of locations capability

Issue - State: open - Opened by shauntruelove about 2 years ago
Labels: enhancement

#496 - Enable single population applications

Issue - State: closed - Opened by shauntruelove about 2 years ago - 1 comment
Labels: enhancement

#495 - Remove hard-coded `geoid_len`

Issue - State: open - Opened by shauntruelove about 2 years ago
Labels: enhancement

#494 - Main diagnostics

Pull Request - State: closed - Opened by shauntruelove about 2 years ago

#493 - Batch submission revamp (slurm + post-process + ...)

Pull Request - State: closed - Opened by jcblemai about 2 years ago - 1 comment

#492 - Main addprocessing

Pull Request - State: closed - Opened by shauntruelove about 2 years ago

#491 - Main fix

Pull Request - State: closed - Opened by shauntruelove about 2 years ago

#490 - Bump setuptools from 47.3.1 to 65.5.1

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#489 - New submission system for SLURM & BATCH

Pull Request - State: closed - Opened by jcblemai about 2 years ago

#488 - Main flu into main

Pull Request - State: closed - Opened by jcblemai about 2 years ago

#487 - black --line-length 120 . --exclude renv*

Pull Request - State: closed - Opened by jcblemai about 2 years ago - 1 comment

#486 - Main flu subfix

Pull Request - State: closed - Opened by jcblemai about 2 years ago

#485 - Main flu into main

Pull Request - State: closed - Opened by jcblemai about 2 years ago

#484 - New submission system for SLURM & BATCH

Pull Request - State: closed - Opened by jcblemai about 2 years ago

#483 - Bump certifi from 2020.4.5.1 to 2022.12.7

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#482 - Done with config_testing

Pull Request - State: open - Opened by HerambGupta over 2 years ago

#481 - Tests for config

Pull Request - State: closed - Opened by HerambGupta over 2 years ago

#480 - Main param timeseries inference fix

Pull Request - State: closed - Opened by jkamins7 over 2 years ago

#479 - Fixed an issue with runs with no acceptances

Pull Request - State: closed - Opened by jkamins7 over 2 years ago

#478 - Very ugly no data fix, do not merge

Pull Request - State: closed - Opened by jcblemai over 2 years ago

#476 - Testing Documentation

Pull Request - State: closed - Opened by HerambGupta over 2 years ago

#475 - Allow to load parameters as timeseries from files

Pull Request - State: closed - Opened by jcblemai over 2 years ago

#474 - Forgot to port the docker changes

Pull Request - State: closed - Opened by jkamins7 over 2 years ago

#473 - Switched ci to trigger on main

Pull Request - State: closed - Opened by jkamins7 over 2 years ago

#472 - Error logging

Pull Request - State: closed - Opened by jkamins7 over 2 years ago

#471 - Continuation resume

Pull Request - State: closed - Opened by jkamins7 over 2 years ago

#470 - Bump numpy from 1.18.2 to 1.22.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#469 - Chimeric reset pre merge

Pull Request - State: closed - Opened by jkamins7 over 2 years ago

#468 - Update docker

Pull Request - State: closed - Opened by jkamins7 almost 3 years ago

#467 - Allow different shape for outcomes

Pull Request - State: closed - Opened by jcblemai almost 3 years ago

#466 - Inference compdev merge

Pull Request - State: closed - Opened by jkamins7 almost 3 years ago - 1 comment

#465 - Capped the number of iterations per block at the number of total iter…

Pull Request - State: closed - Opened by jkamins7 almost 3 years ago

#464 - fixing non-us issue with fips

Pull Request - State: open - Opened by jkamins7 almost 3 years ago

#463 - Continuation resume

Pull Request - State: closed - Opened by jkamins7 almost 3 years ago

#462 - Csp packaging hivepartitioning

Pull Request - State: closed - Opened by jkamins7 almost 3 years ago

#461 - updated DESCRIPTION with new pacakge requirements and version 1.0.0

Pull Request - State: closed - Opened by jkamins7 almost 3 years ago

#460 - Space efficient

Pull Request - State: closed - Opened by jkamins7 almost 3 years ago

#459 - Adding test for documentation

Pull Request - State: closed - Opened by HerambGupta almost 3 years ago

#458 - Csp packaging gtfix merge

Pull Request - State: closed - Opened by jcblemai almost 3 years ago

#457 - Updated packrat for shaun

Pull Request - State: closed - Opened by jkamins7 almost 3 years ago

#456 - Hive-partitioning stub, require big inference changes

Pull Request - State: closed - Opened by jcblemai almost 3 years ago

#455 - Docker update for improved groundtruth

Pull Request - State: closed - Opened by jkamins7 almost 3 years ago

#454 - Config writer comp dev

Pull Request - State: closed - Opened by jcblemai almost 3 years ago

#453 - gt fix

Pull Request - State: closed - Opened by jcblemai almost 3 years ago

#452 - Compartment dev jk

Pull Request - State: closed - Opened by jkamins7 about 3 years ago

#451 - Revert "Compartment dev ci"

Pull Request - State: closed - Opened by jkamins7 about 3 years ago

#450 - Compartment dev ci

Pull Request - State: closed - Opened by jkamins7 about 3 years ago

#449 - Compartment dev gt fix

Pull Request - State: closed - Opened by jkamins7 about 3 years ago

#448 - Pipeline V2: integrated processes, polish & bug fixes ✨

Pull Request - State: closed - Opened by jcblemai about 3 years ago - 3 comments

#447 - Epidemic integration improvements

Pull Request - State: closed - Opened by jcblemai about 3 years ago - 2 comments

#446 - fix for resume: param_name for NPIs is always taken from config

Pull Request - State: closed - Opened by jcblemai about 3 years ago

#445 - Continuation resume updated

Pull Request - State: closed - Opened by jcblemai about 3 years ago

#444 - tentative fix

Pull Request - State: closed - Opened by jcblemai about 3 years ago

#443 - adding parameters in-between resume is supported

Pull Request - State: closed - Opened by jcblemai about 3 years ago

#442 - Compartment dev cleanup

Pull Request - State: closed - Opened by jkamins7 about 3 years ago

#441 - Aws diagnosis for disk space

Pull Request - State: closed - Opened by jcblemai about 3 years ago

#440 - compute new outcomes when resuming

Pull Request - State: closed - Opened by jcblemai about 3 years ago

#438 - Slurm batch dev

Pull Request - State: closed - Opened by jcblemai over 3 years ago

#437 - Updated filter_mc to always accept during first block

Pull Request - State: closed - Opened by jkamins7 over 3 years ago

#436 - Inference config writer

Pull Request - State: open - Opened by juanderone over 3 years ago

#435 - Groundtruth refactor

Pull Request - State: open - Opened by jkamins7 over 3 years ago

#434 - Stopped copying hosp and seir files on resume

Pull Request - State: closed - Opened by jkamins7 over 3 years ago

#433 - Compartment dev jk

Pull Request - State: closed - Opened by jkamins7 over 3 years ago

#432 - Upstream dev to inference

Pull Request - State: open - Opened by jkamins7 over 3 years ago

#431 - Upstream master -> dev (this seems hard for some reason)

Pull Request - State: open - Opened by jkamins7 over 3 years ago - 1 comment

#430 - Inference

Pull Request - State: closed - Opened by jkamins7 over 3 years ago

#429 - Inference

Pull Request - State: closed - Opened by jkamins7 over 3 years ago

#428 - Config writer

Pull Request - State: closed - Opened by juanderone over 3 years ago - 1 comment

#427 - Fixed mobility

Pull Request - State: closed - Opened by jkamins7 over 3 years ago

#426 - Compartment dev broken jk

Pull Request - State: closed - Opened by jkamins7 over 3 years ago

#425 - Compartment graph dev

Pull Request - State: closed - Opened by jcblemai over 3 years ago

#423 - Bump urllib3 from 1.25.8 to 1.26.5

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#422 - Merged

Pull Request - State: closed - Opened by jkamins7 almost 4 years ago

#421 - Updated seeding based on meeting today

Pull Request - State: closed - Opened by jkamins7 almost 4 years ago

#420 - Profiling and Optimisation 🚀

Pull Request - State: closed - Opened by jcblemai almost 4 years ago - 3 comments

#419 - Bump py from 1.8.1 to 1.10.0

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies

#418 - allow to set seed from R, using variable rng_seed

Pull Request - State: closed - Opened by jcblemai almost 4 years ago

#410 - Bump pyyaml from 5.3.1 to 5.4

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies

#408 - Bump jinja2 from 2.11.1 to 2.11.3

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies

#405 - Changed file names to have slot/iter/block be part of a folder

Pull Request - State: closed - Opened by jkamins7 almost 4 years ago - 1 comment

#404 - Resume SEIR

Pull Request - State: closed - Opened by jcblemai about 4 years ago

#401 - Inference state

Pull Request - State: closed - Opened by eclee25 about 4 years ago

#391 - Fix relative probability possible incompatibility with config

Pull Request - State: closed - Opened by jcblemai about 4 years ago

#355 - setup.py missing

Issue - State: closed - Opened by ghost over 4 years ago - 3 comments

#352 - Report devel2 into dev

Pull Request - State: closed - Opened by eclee25 over 4 years ago

#351 - prep report_devel2 for dev merge

Pull Request - State: closed - Opened by eclee25 over 4 years ago

#317 - Remove mobility matrix warning from setup.py if a .csv is specified

Issue - State: closed - Opened by shauntruelove over 4 years ago - 1 comment

#296 - Inference

Pull Request - State: open - Opened by jkamins7 almost 5 years ago

#257 - Generic version of the batch job launcher/runner

Pull Request - State: closed - Opened by jwills almost 5 years ago

#210 - Dataseed merge

Pull Request - State: closed - Opened by jkamins7 almost 5 years ago

#208 - Report devel

Pull Request - State: closed - Opened by jkamins7 almost 5 years ago