hopkinsidd/cholera-mapping-pipeline issues and pull requests

#601 - Dev

Pull Request - State: closed - Opened by eclee25 about 2 months ago

#600 - Update make_final_figures_and_tables.R

Pull Request - State: closed - Opened by QLLZ about 2 months ago

#599 - Dev multicountry parallel

Pull Request - State: open - Opened by eclee25 3 months ago

#598 - updated figure code

Pull Request - State: closed - Opened by eclee25 4 months ago

#597 - new updates about manuscript figures and functions

Pull Request - State: closed - Opened by QLLZ 6 months ago

#596 - Update postprocessing.R

Pull Request - State: closed - Opened by QLLZ 7 months ago

#595 - Update pull_data_helpers.R

Pull Request - State: closed - Opened by QLLZ 8 months ago

#594 - Update mapping_manuscript_stats.Rmd

Pull Request - State: closed - Opened by QLLZ 8 months ago

#593 - updated scripts for mini manuscript stats

Pull Request - State: closed - Opened by QLLZ 9 months ago

#592 - Update country_slides.Rmd

Pull Request - State: closed - Opened by QLLZ 9 months ago

#591 - Dev update postprocessing

Pull Request - State: closed - Opened by QLLZ 9 months ago

#590 - Dev

Pull Request - State: closed - Opened by QLLZ 9 months ago

#589 - Risk category for thresholds of 95 and 50%

Pull Request - State: closed - Opened by javierps 9 months ago

#588 - Create country_slides.Rmd

Pull Request - State: closed - Opened by QLLZ 9 months ago - 1 comment

#587 - Update mapping_manuscript_stats.Rmd

Pull Request - State: closed - Opened by QLLZ 9 months ago

#586 - Manuscript stats report - outbreak analysis

Pull Request - State: closed - Opened by javierps 10 months ago

#585 - Dev update postprocessing

Pull Request - State: closed - Opened by eclee25 10 months ago

#584 - Outbreak extraction coverage report

Pull Request - State: closed - Opened by christinaalam 10 months ago

#583 - WHO outbreak analysis

Pull Request - State: closed - Opened by javierps 10 months ago

#582 - Computation of manuscript stats

Pull Request - State: closed - Opened by javierps 11 months ago

#581 - Save draws of grid rates/cases

Pull Request - State: closed - Opened by javierps 12 months ago

#580 - New shell script to install R packages for R 4.2 on Rockfish

Pull Request - State: open - Opened by fang19911030 12 months ago

#579 - Tables with mean annual cases by admin level

Pull Request - State: closed - Opened by javierps 12 months ago

#578 - More update postprocessing

Pull Request - State: closed - Opened by javierps 12 months ago

#577 - Update output_figures_and_tables.R

Pull Request - State: closed - Opened by QLLZ 12 months ago

#576 - Another update postprocessing

Pull Request - State: closed - Opened by javierps 12 months ago

#575 - Update make_final_figures_and_tables.R

Pull Request - State: closed - Opened by QLLZ about 1 year ago

#574 - Dev update postprocessing

Pull Request - State: closed - Opened by javierps about 1 year ago

#573 - Yet more postprocessing

Pull Request - State: closed - Opened by javierps about 1 year ago

#572 - Dev update postprocessing

Pull Request - State: closed - Opened by eclee25 about 1 year ago

#571 - Update output_figures_and_tables.R

Pull Request - State: closed - Opened by QLLZ about 1 year ago

#570 - Update shapefile_utils.R

Pull Request - State: closed - Opened by QLLZ about 1 year ago

#569 - Add missing packages and additional checks

Pull Request - State: open - Opened by fang19911030 about 1 year ago

#568 - Update plot_DroppedData_table.R

Pull Request - State: closed - Opened by QLLZ about 1 year ago - 1 comment

#567 - updated shell scripts for running postprocessing code

Pull Request - State: closed - Opened by QLLZ about 1 year ago

#566 - Revert setting Mainland and ZNZ as ADM0 level

Pull Request - State: closed - Opened by javierps about 1 year ago

#565 - More postprocessing

Pull Request - State: closed - Opened by javierps about 1 year ago

#564 - Dev drop low pop lps fix

Pull Request - State: closed - Opened by eclee25 about 1 year ago

#563 - Update prepare_stan_input.R

Pull Request - State: closed - Opened by QLLZ about 1 year ago - 1 comment

#562 - Sfrac upper limit to exactly 1

Pull Request - State: closed - Opened by javierps about 1 year ago

#561 - Fix imputation for multiple ADM0 locations

Pull Request - State: closed - Opened by javierps about 1 year ago - 1 comment

#560 - Drop low pop lps

Pull Request - State: closed - Opened by javierps about 1 year ago - 1 comment

#559 - Fix aggregation

Pull Request - State: closed - Opened by javierps about 1 year ago - 1 comment

#558 - Clean all temporary tables

Pull Request - State: closed - Opened by javierps about 1 year ago

#557 - Dev taxdat data pull sql

Pull Request - State: closed - Opened by QLLZ about 1 year ago

#556 - Cap values of w

Pull Request - State: closed - Opened by javierps about 1 year ago - 1 comment

#555 - adding raster processing script

Pull Request - State: closed - Opened by mustafasikder about 1 year ago - 1 comment

#554 - Dev fix censoring thresh 1

Pull Request - State: closed - Opened by eclee25 about 1 year ago

#553 - Update plot_MCMC.R

Pull Request - State: closed - Opened by QLLZ about 1 year ago

#552 - stop clone cholera-config repo

Pull Request - State: closed - Opened by fang19911030 about 1 year ago

#551 - Fix population bug due to ordering of output shapefiles

Pull Request - State: closed - Opened by javierps about 1 year ago

#550 - Fix bug when censoring thresh is 1

Pull Request - State: closed - Opened by javierps about 1 year ago - 1 comment

#549 - remove set precision

Pull Request - State: closed - Opened by javierps about 1 year ago - 1 comment

#548 - Dev cleanup

Pull Request - State: closed - Opened by eclee25 about 1 year ago

#547 - Fix UN pop adjustment

Pull Request - State: closed - Opened by javierps about 1 year ago

#545 - Fix shapefile ADM0 intersection and population adjustment computation

Pull Request - State: closed - Opened by javierps about 1 year ago

#540 - Update postprocessing

Pull Request - State: closed - Opened by javierps about 1 year ago

#519 - change rho prior to be a more centered distrib for testing

Pull Request - State: closed - Opened by eclee25 over 1 year ago - 1 comment

#504 - New pipeline js

Pull Request - State: closed - Opened by jfsong100 over 1 year ago - 1 comment

#480 - extract duplicate code as function

Pull Request - State: closed - Opened by fang19911030 over 1 year ago

#456 - ZAF 2016-20

Issue - State: open - Opened by eclee25 over 1 year ago - 16 comments
Labels: no-W model

#455 - ZAF 2011-15

Issue - State: open - Opened by eclee25 over 1 year ago - 18 comments
Labels: no-W model

#452 - TZA 2016-20

Issue - State: open - Opened by eclee25 over 1 year ago - 22 comments

#451 - TZA 2011-15

Issue - State: open - Opened by eclee25 over 1 year ago - 14 comments

#447 - TCD 2011-15

Issue - State: open - Opened by eclee25 over 1 year ago - 11 comments

#446 - SWZ 2016-20

Issue - State: open - Opened by eclee25 over 1 year ago - 17 comments
Labels: no-W model

#445 - SWZ 2011-15

Issue - State: open - Opened by eclee25 over 1 year ago - 11 comments
Labels: no-W model

#441 - SOM 2011-15

Issue - State: open - Opened by eclee25 over 1 year ago - 12 comments
Labels: pop_pp

#440 - SLE 2016-20

Issue - State: open - Opened by eclee25 over 1 year ago - 14 comments

#438 - SEN 2016-20

Issue - State: open - Opened by eclee25 over 1 year ago - 9 comments
Labels: no-W model

#437 - SEN 2011-15

Issue - State: open - Opened by eclee25 over 1 year ago - 13 comments
Labels: no-W model

#436 - SDN 2016-20

Issue - State: open - Opened by eclee25 over 1 year ago - 23 comments
Labels: multiyr_obs

#435 - SDN 2011-15

Issue - State: open - Opened by eclee25 over 1 year ago - 15 comments
Labels: no-W model

#434 - RWA 2016-20

Issue - State: open - Opened by eclee25 over 1 year ago - 12 comments
Labels: no-W model

#433 - RWA 2011-15

Issue - State: open - Opened by eclee25 over 1 year ago - 20 comments

#432 - NGA 2016-20

Issue - State: open - Opened by eclee25 over 1 year ago - 33 comments
Labels: multiyr_obs

#426 - MWI 2016-20

Issue - State: open - Opened by eclee25 over 1 year ago - 14 comments
Labels: multiyr_obs

#425 - MWI 2011-15

Issue - State: open - Opened by eclee25 over 1 year ago - 13 comments
Labels: multiyr_obs

#424 - MRT 2016-20

Issue - State: open - Opened by eclee25 over 1 year ago - 9 comments
Labels: no-W model

#423 - MRT 2011-15

Issue - State: open - Opened by eclee25 over 1 year ago - 17 comments
Labels: min_subnat model

#420 - MLI 2016-20

Issue - State: open - Opened by eclee25 over 1 year ago - 8 comments
Labels: no-W model

#418 - MDG 2016-20

Issue - State: open - Opened by eclee25 over 1 year ago - 9 comments
Labels: no-W model

#416 - LSO 2016-20

Issue - State: open - Opened by eclee25 over 1 year ago - 22 comments
Labels: no-W model

#415 - LSO 2011-15

Issue - State: open - Opened by eclee25 over 1 year ago - 25 comments
Labels: no-W model

#413 - LBR 2011-15

Issue - State: open - Opened by eclee25 over 1 year ago - 15 comments
Labels: no-W model

#410 - GNQ 2011-15

Issue - State: open - Opened by eclee25 over 1 year ago - 10 comments
Labels: no-W model

#409 - GNQ 2016-20

Issue - State: open - Opened by eclee25 over 1 year ago - 10 comments
Labels: no-W model

#408 - GNB 2016-20

Issue - State: open - Opened by eclee25 over 1 year ago - 8 comments
Labels: no-W model

#402 - GHA 2016-20

Issue - State: open - Opened by eclee25 over 1 year ago - 11 comments
Labels: no-W model

#400 - GAB 2016-20

Issue - State: open - Opened by eclee25 over 1 year ago - 9 comments
Labels: pop_pp, no-W model

#399 - GAB 2011-15

Issue - State: open - Opened by eclee25 over 1 year ago - 9 comments
Labels: no-W model

#396 - ERI 2011-15

Issue - State: open - Opened by eclee25 over 1 year ago - 9 comments
Labels: no-W model

#395 - ERI 2016-20

Issue - State: open - Opened by eclee25 over 1 year ago - 9 comments
Labels: no-W model

#394 - DJI 2016-20

Issue - State: open - Opened by eclee25 over 1 year ago - 13 comments
Labels: no-W model

#393 - DJI 2011-15

Issue - State: open - Opened by eclee25 over 1 year ago - 13 comments
Labels: no-W model

#390 - COD 2016-20

Issue - State: open - Opened by eclee25 over 1 year ago - 25 comments
Labels: multiyr_obs

#270 - add mean rate as gam offset second try

Pull Request - State: closed - Opened by NedaJalali-codes almost 2 years ago - 2 comments

#213 - Dev covar transform

Pull Request - State: closed - Opened by jkamins7 about 2 years ago - 1 comment

#148 - update my respiratory

Pull Request - State: closed - Opened by NedaJalali-codes over 2 years ago - 1 comment

#100 - Dev censoring prior

Pull Request - State: closed - Opened by jkamins7 over 2 years ago

GitHub / hopkinsidd/cholera-mapping-pipeline issues and pull requests