holoviz-topics/neuro issues and pull requests

#104 - Deep image stack annotation workflow docs

Pull Request - State: closed - Opened by droumis 6 months ago

#103 - Annotate multi ts workflow

Pull Request - State: closed - Opened by droumis 7 months ago

#103 - Annotate multi ts workflow

Pull Request - State: closed - Opened by droumis 7 months ago

#102 - Stream ts workflow with reset to stream follow

Issue - State: open - Opened by droumis 7 months ago - 1 comment

#102 - Stream ts workflow with reset to stream follow

Issue - State: open - Opened by droumis 7 months ago - 1 comment

#101 - Baseline stream ts workflow

Issue - State: closed - Opened by droumis 7 months ago

#101 - Baseline stream ts workflow

Issue - State: closed - Opened by droumis 7 months ago

#100 - Baseline stream timeseries dev workflow

Pull Request - State: closed - Opened by droumis 7 months ago

#100 - Baseline stream timeseries dev workflow

Pull Request - State: closed - Opened by droumis 7 months ago

#99 - Benchmarking summary report

Issue - State: open - Opened by droumis 7 months ago

#99 - Benchmarking summary report

Issue - State: open - Opened by droumis 7 months ago

#98 - Update deep image stack workflow

Pull Request - State: closed - Opened by droumis 7 months ago
Labels: docs, ca-imaging

#97 - Refactor notebook and address some comments

Pull Request - State: closed - Opened by ahuang11 9 months ago

#96 - Draft public docs for Multi-Channel timeseries and Large Image workflows

Pull Request - State: closed - Opened by droumis 9 months ago - 5 comments

#95 - Timerange annotation mockup

Pull Request - State: closed - Opened by droumis 10 months ago

#95 - Timerange annotation mockup

Pull Request - State: closed - Opened by droumis 10 months ago

#94 - [GOAL] Minimap

Issue - State: closed - Opened by droumis 10 months ago

#94 - [GOAL] Minimap

Issue - State: closed - Opened by droumis 10 months ago

#93 - Add large image (neuroglancer-nb) workflow

Pull Request - State: closed - Opened by droumis 10 months ago

#92 - Multi-scale Large Image Volume workflow

Issue - State: open - Opened by droumis 11 months ago - 10 comments

#92 - Multi-scale Large Image Volume workflow

Issue - State: open - Opened by droumis 11 months ago - 10 comments

#91 - Revise waveform snippets workflow

Pull Request - State: closed - Opened by droumis 12 months ago

#91 - Revise waveform snippets workflow

Pull Request - State: closed - Opened by droumis 12 months ago

#90 - [GOAL] Benchmarking Workflows

Issue - State: open - Opened by droumis about 1 year ago

#90 - [GOAL] Benchmarking Workflows

Issue - State: open - Opened by droumis about 1 year ago

#89 - Make image stack workflow into public facing resource

Issue - State: open - Opened by droumis about 1 year ago
Labels: docs

#88 - Make multi-chan timeseries workflow into public-facing resource

Issue - State: open - Opened by droumis about 1 year ago
Labels: docs

#87 - [GOAL] Demo viewing of large multi-chan timeseries data with multi-time-resolution generator and dynamic accessor

Issue - State: closed - Opened by droumis about 1 year ago - 49 comments
Labels: tag: feature: subcoordinate_y

#86 - Create baseline large image workflow

Issue - State: closed - Opened by droumis about 1 year ago

#85 - GOAL: Create public facing docs website

Issue - State: closed - Opened by droumis about 1 year ago - 1 comment
Labels: docs

#84 - Partial update benchmarking infra

Pull Request - State: closed - Opened by droumis about 1 year ago

#83 - Add holoviz zoom benchmark

Pull Request - State: closed - Opened by droumis about 1 year ago

#82 - Add holonote to stacked-timeseries workflow

Pull Request - State: closed - Opened by droumis about 1 year ago

#81 - Add LFP large data handling notebook

Pull Request - State: closed - Opened by ianthomas23 over 1 year ago - 4 comments

#80 - Create random range annotations

Pull Request - State: closed - Opened by droumis over 1 year ago

#79 - init convergence of stackedtimeseries viewers

Pull Request - State: closed - Opened by droumis over 1 year ago

#78 - Add multitimeseries viewer workflow

Pull Request - State: closed - Opened by droumis over 1 year ago

#77 - Dev work on annotations

Pull Request - State: closed - Opened by droumis over 1 year ago
Labels: eeg-viewer, eeg

#76 - Load and visualize real data in workflow

Pull Request - State: closed - Opened by droumis over 1 year ago
Labels: video-viewer, ca-imaging

#75 - Dev testing of subcoordinate_y for stacked traces

Pull Request - State: closed - Opened by droumis over 1 year ago
Labels: eeg-viewer, eeg, ephys-viewer, ephys

#74 - Add Panel and HoloViews benchmark

Pull Request - State: closed - Opened by ianthomas23 over 1 year ago - 5 comments

#73 - Add benchmark for interaction (zoom)

Pull Request - State: closed - Opened by ianthomas23 over 1 year ago - 2 comments

#72 - GOAL: Implement GPU-acceleration for image types

Issue - State: closed - Opened by droumis over 1 year ago
Labels: video-viewer, ca-imaging

#71 - GOAL: create synthetic data generators

Issue - State: closed - Opened by droumis over 1 year ago
Labels: eeg-viewer, eeg, video-viewer, ephys-viewer, ephys, ca-imaging

#70 - Add real eeg data and corrected hover amplitude

Pull Request - State: closed - Opened by droumis over 1 year ago
Labels: eeg-viewer, eeg

#69 - Adds a download utility

Pull Request - State: closed - Opened by droumis over 1 year ago
Labels: infra

#68 - Add EEG sim blink artifacts and channel correlations

Pull Request - State: closed - Opened by droumis over 1 year ago
Labels: eeg-viewer, eeg

#67 - Add pre-commit - clean notebook output, etc to repo

Issue - State: open - Opened by droumis over 1 year ago
Labels: infra

#66 - GOAL: Benchmark workflows

Issue - State: closed - Opened by droumis over 1 year ago - 2 comments

#65 - Add responsive sizing and better spacing to eeg viewer plots

Pull Request - State: closed - Opened by droumis over 1 year ago
Labels: eeg-viewer, eeg

#64 - Large gap between components of EEG viewer

Issue - State: open - Opened by cbrnr over 1 year ago - 2 comments

#63 - Add RangeTool link bounds

Pull Request - State: closed - Opened by droumis over 1 year ago
Labels: eeg-viewer, eeg, ephys-viewer, ephys

#62 - Benchmarking framework using ASV and Playwright

Pull Request - State: closed - Opened by ianthomas23 over 1 year ago - 12 comments

#61 - Expose array naming when simulating miniscope data

Pull Request - State: closed - Opened by droumis over 1 year ago
Labels: video-viewer, ca-imaging

#60 - Save and read sim vid data in workflow

Pull Request - State: closed - Opened by droumis over 1 year ago
Labels: video-viewer, ca-imaging

#59 - add slice dim views to vid viewer

Pull Request - State: closed - Opened by droumis over 1 year ago
Labels: video-viewer, ca-imaging

#58 - GOAL: sliced dimension views of frame-axis sides of image stack

Issue - State: closed - Opened by droumis over 1 year ago
Labels: video-viewer, ca-imaging

#57 - add predefined selection hooks for rangetoollink

Pull Request - State: closed - Opened by droumis over 1 year ago
Labels: eeg-viewer, eeg, ephys-viewer, ephys

#56 - GOAL: Workflow API/implementation review

Issue - State: closed - Opened by droumis over 1 year ago
Labels: eeg-viewer, eeg, video-viewer, spike-raster, ephys-viewer, waveform, ephys, ca-imaging

#55 - GOAL: Develop Minian CNMF workflow

Issue - State: open - Opened by droumis over 1 year ago
Labels: minian-cnmf, ca-imaging

#54 - GOAL: Develop MNE Raw workflow

Issue - State: open - Opened by droumis over 1 year ago
Labels: eeg, mne-raw

#53 - GOAL: Develop Spike Motif workflow

Issue - State: open - Opened by droumis over 1 year ago
Labels: spike-motif, ephys

#52 - GOAL: Develop linked ephys-sensor layout workflow

Issue - State: open - Opened by droumis over 1 year ago
Labels: ephys

#51 - GOAL: Develop linked eeg-sensor layout workflow

Issue - State: open - Opened by droumis over 1 year ago
Labels: eeg

#50 - GOAL: Develop Multimodal workflow

Issue - State: open - Opened by droumis over 1 year ago
Labels: eeg, ephys, ca-imaging

#49 - GOAL: spike raster count aggregation for x and y

Issue - State: open - Opened by droumis over 1 year ago
Labels: spike-raster, ephys

#48 - GOAL: Waveform color per group + datashading + interactivity

Issue - State: closed - Opened by droumis over 1 year ago
Labels: waveform, ephys

#47 - Populate spike-raster and waveform readme and format workflow notebooks

Pull Request - State: closed - Opened by droumis over 1 year ago
Labels: docs

#46 - GOAL `real-data`: Identify and incorporate real data into workflows

Issue - State: closed - Opened by droumis over 1 year ago
Labels: eeg-viewer, eeg, video-viewer, spike-raster, ephys-viewer, waveform, ephys, ca-imaging

#45 - GOAL: Maintain scatter marker spread when zooming

Issue - State: open - Opened by droumis over 1 year ago
Labels: spike-raster, ephys

#44 - GOAL: Create util to convert spike time formats

Issue - State: open - Opened by droumis over 1 year ago
Labels: spike-raster, ephys

#43 - GOAL: Simulate spike time grouping based on motifs

Issue - State: open - Opened by droumis over 1 year ago
Labels: spike-raster, spike-motif, ephys

#42 - GOAL: Summary stats for image stack

Issue - State: open - Opened by droumis over 1 year ago
Labels: video-viewer, ca-imaging

#41 - GOAL: Intensity histogram for image stack

Issue - State: open - Opened by droumis over 1 year ago
Labels: video-viewer, ca-imaging

#40 - GOAL: 2D annotation handling

Issue - State: closed - Opened by droumis over 1 year ago - 1 comment
Labels: video-viewer, ca-imaging

#39 - GOAL: Utilize Panel Player widget for xarray playback

Issue - State: closed - Opened by droumis over 1 year ago
Labels: video-viewer, ca-imaging

#38 - Populate workflow readmes

Pull Request - State: closed - Opened by droumis over 1 year ago - 1 comment
Labels: docs

#37 - [GOAL] Subcoordinates stacked along Y-axis with 'group' support

Issue - State: closed - Opened by droumis over 1 year ago - 2 comments
Labels: eeg-viewer, eeg, ephys-viewer, ephys

#36 - GOAL: Minimap/RangeTool

Issue - State: closed - Opened by droumis over 1 year ago - 1 comment
Labels: eeg-viewer, eeg, ephys-viewer, ephys

#35 - [GOAL] Support Range Annotations

Issue - State: open - Opened by droumis over 1 year ago
Labels: eeg-viewer, eeg, ephys-viewer, ephys

#34 - [GOAL] Scale bar

Issue - State: open - Opened by droumis over 1 year ago - 5 comments
Labels: eeg-viewer, eeg, video-viewer, ephys-viewer, waveform, ephys, ca-imaging

#33 - [EPIC] Multi-channel timeseries viewer

Issue - State: closed - Opened by droumis over 1 year ago
Labels: eeg-viewer, eeg, ephys-viewer, ephys

#32 - GOAL: Large-data-handling

Issue - State: closed - Opened by droumis over 1 year ago - 1 comment
Labels: eeg-viewer, eeg, video-viewer, ephys-viewer, ephys, ca-imaging

#31 - Toggle between unstacked and overlaid (butterfly mode) channels

Issue - State: open - Opened by droumis over 1 year ago
Labels: eeg-viewer, eeg, ephys-viewer, ephys

#30 - Demo holonote annotation in timeseries workflows

Issue - State: closed - Opened by droumis over 1 year ago
Labels: eeg-viewer, eeg, ephys-viewer, ephys

#29 - Implement option to clip signals beyond overlap amount

Issue - State: open - Opened by droumis over 1 year ago

#28 - Benchmark speed of initial display, zoom, and pan

Issue - State: closed - Opened by droumis over 1 year ago - 1 comment

#27 - [GOAL] channel type grouping

Issue - State: closed - Opened by droumis over 1 year ago - 1 comment
Labels: eeg-viewer, eeg, ephys-viewer, ephys

#26 - Add player widget hvplot vidviewer and init hvNeuro module

Pull Request - State: closed - Opened by droumis over 1 year ago
Labels: enhancement, video-viewer, ca-imaging

#25 - Create panel for image histogram levels adjustment with simple viewer

Issue - State: closed - Opened by droumis over 1 year ago - 1 comment
Labels: video-viewer, ca-imaging

#24 - Rand noise vid viewer

Pull Request - State: closed - Opened by droumis over 1 year ago

#23 - Update readme to reflect reorg

Pull Request - State: closed - Opened by droumis over 1 year ago

#22 - Reorganize repo into src and workflows at root

Pull Request - State: closed - Opened by droumis over 1 year ago
Labels: enhancement, infra

#21 - Format and standardize data gen code and eeg, vid viewer workflows

Pull Request - State: closed - Opened by droumis over 1 year ago
Labels: enhancement, eeg-viewer, video-viewer

#20 - return time (in addition to frame) as coord for imaging stack

Issue - State: open - Opened by droumis over 1 year ago
Labels: enhancement, video-viewer, ca-imaging

#19 - Demo spike raster via hv.Scatter(...).opts(marker=dash, angle=90)

Issue - State: closed - Opened by droumis over 1 year ago - 1 comment
Labels: enhancement, spike-raster, ephys

#18 - quick fix to opts bug

Pull Request - State: closed - Opened by droumis over 1 year ago

#17 - Adapt VArrayViewer from minian viz

Pull Request - State: closed - Opened by droumis over 1 year ago - 1 comment
Labels: enhancement, video-viewer, ca-imaging

#16 - Refactor miniscope simulation into neurodatagen

Pull Request - State: closed - Opened by droumis over 1 year ago
Labels: enhancement, video-viewer, ca-imaging

#15 - Sim and view imaging data w minian tools

Pull Request - State: closed - Opened by droumis over 1 year ago
Labels: enhancement, video-viewer, ca-imaging

GitHub / holoviz-topics/neuro issues and pull requests