Ecosyste.ms: Issues

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GitHub / hivdb/nucamino issues and pull requests

#14 - Align to other genes

Issue - State: closed - Opened by sureman over 4 years ago - 2 comments

#12 - Add a `list-genes` subcommand to `nucamino profile`

Pull Request - State: closed - Opened by nathanielknight about 6 years ago - 4 comments

#11 - Add HCV References for genotypes 1b, 2, 3, 4, 5, and 6

Pull Request - State: closed - Opened by nathanielknight about 6 years ago - 1 comment

#10 - Update the command line interface

Pull Request - State: closed - Opened by nathanielknight over 6 years ago - 5 comments

#9 - Print and Read AlignmentProfiles

Pull Request - State: closed - Opened by nathanielknight over 6 years ago - 7 comments

#7 - Alignmentprofile

Pull Request - State: closed - Opened by nathanielknight over 6 years ago - 4 comments

#6 - Add preliminary HCV1a support

Pull Request - State: closed - Opened by nathanielknight over 6 years ago - 2 comments

#5 - Add preliminary HCV support

Pull Request - State: closed - Opened by nathanielknight over 6 years ago - 4 comments

#4 - Factor out HIV1B-specific code in the CLI interface

Pull Request - State: closed - Opened by nathanielknight over 6 years ago - 10 comments

#3 - General interface for specify reference and positional indel scores

Issue - State: closed - Opened by philiptzou over 6 years ago - 18 comments

#2 - Long gaps should receive less penalties

Issue - State: open - Opened by philiptzou over 6 years ago

#1 - Support indel codon opening bonus

Pull Request - State: closed - Opened by philiptzou over 7 years ago