higra/Higra issues and pull requests

#279 - Remove fast-math optimization

Pull Request - State: closed - Opened by PerretB 4 months ago - 1 comment

#278 - Update array vendored libraries to make Higra compatible with `numpy==2.0.0`

Pull Request - State: closed - Opened by JoOkuma 4 months ago - 3 comments

#277 - Updated vendored libraries

Pull Request - State: closed - Opened by JoOkuma 4 months ago - 10 comments

#276 - Compatibility with numpy 2.0

Issue - State: closed - Opened by PerretB 6 months ago - 1 comment

#275 - add to `conda-forge`

Issue - State: closed - Opened by JoOkuma 6 months ago - 4 comments

#274 - pip installation failed

Issue - State: closed - Opened by hugoverzone 11 months ago - 2 comments
Labels: duplicate

#273 - Attribute extrema computation without child computation

Pull Request - State: closed - Opened by lefevrej 12 months ago - 2 comments

#272 - Add python 3.12 wheels, remove python 3.7

Pull Request - State: closed - Opened by PerretB about 1 year ago - 1 comment

#271 - Add wheels and support for python 3.12

Issue - State: closed - Opened by arturo-florez about 1 year ago - 3 comments

#270 - Fix bipartite graph matching with empty graph

Pull Request - State: closed - Opened by PerretB about 1 year ago - 1 comment

#269 - `hg.match_pixels_image_2d` fails when nothing matches between the two boundary maps

Issue - State: closed - Opened by lapertor over 1 year ago

#268 - fix ultrametric opening and improve documentation

Pull Request - State: closed - Opened by PerretB over 1 year ago - 1 comment

#267 - Bug in graph utility function ultrametric_open

Issue - State: closed - Opened by PerretB over 1 year ago
Labels: bug

#266 - Debug appveyor

Pull Request - State: closed - Opened by PerretB over 1 year ago

#265 - Bipartite graph matching

Pull Request - State: closed - Opened by PerretB over 1 year ago - 1 comment

#264 - Add "similarity" mode in Dasgupta quality measure

Pull Request - State: closed - Opened by PerretB over 1 year ago - 1 comment

#263 - Add to_undirected_graph to the tree class (Python)

Pull Request - State: closed - Opened by PerretB over 1 year ago - 1 comment

#262 - Add option to use a preexisting graph in graph_4_adjacency_2_khalimsky

Pull Request - State: closed - Opened by PerretB over 1 year ago - 1 comment

#261 - add python 3.11 to wheel generation

Pull Request - State: closed - Opened by PerretB over 1 year ago - 1 comment

#260 - Seeded watershed performance

Issue - State: open - Opened by PerretB almost 2 years ago
Labels: enhancement

#259 - Correction of mixed links in notebooks.rst

Pull Request - State: closed - Opened by lnajman almost 2 years ago - 1 comment

#258 - replace deprecated np.bool by np.bool_

Pull Request - State: closed - Opened by PerretB almost 2 years ago - 1 comment

#257 - Restructuration of the notebook examples, so that they easier to pars…

Pull Request - State: closed - Opened by lnajman almost 2 years ago

#255 - `correct_attribute_BPT`

Issue - State: closed - Opened by ShoufaChen almost 2 years ago - 5 comments
Labels: documentation

#254 - fix reconstruct_leaf_data sometimes modifying an input parameter

Pull Request - State: closed - Opened by PerretB almost 2 years ago - 2 comments

#253 - Add wheels for python 3.11

Issue - State: closed - Opened by PerretB almost 2 years ago - 3 comments

#252 - fix empty tree creation from empty parent array

Pull Request - State: closed - Opened by PerretB almost 2 years ago - 1 comment

#251 - Upgrade third party libs

Pull Request - State: closed - Opened by PerretB almost 2 years ago - 1 comment

#250 - Unable to create an empty Tree

Issue - State: closed - Opened by josselin-lefevre-tfs almost 2 years ago
Labels: bug

#249 - Add binaries for Mac Silicon

Issue - State: open - Opened by PerretB about 2 years ago - 7 comments
Labels: feature request

#248 - Tree to undirected graph

Issue - State: closed - Opened by PerretB about 2 years ago
Labels: feature request

#247 - Dasgupta metric for similarity measures

Issue - State: closed - Opened by PerretB about 2 years ago
Labels: enhancement

#246 - reconstruct_leaf_data modifies a parameter

Issue - State: closed - Opened by PerretB about 2 years ago

#245 - C++ 17 and nanobind python bindings

Issue - State: open - Opened by PerretB over 2 years ago

#244 - Add option to use a preexisting graph in graph_4_adjacency_2_khalimsky

Issue - State: closed - Opened by PerretB almost 3 years ago
Labels: enhancement

#243 - Migrate travis to azure

Pull Request - State: closed - Opened by PerretB almost 3 years ago - 1 comment

#242 - Fix CI pipeline

Pull Request - State: closed - Opened by PerretB almost 3 years ago - 1 comment

#241 - Conditional propagator and combine

Pull Request - State: closed - Opened by PerretB almost 3 years ago - 1 comment

#240 - Travis token updates

Pull Request - State: closed - Opened by PerretB over 3 years ago - 1 comment

#239 - Line graph

Pull Request - State: closed - Opened by PerretB over 3 years ago - 1 comment

#238 - Sub tree

Pull Request - State: closed - Opened by PerretB over 3 years ago - 1 comment

#237 - Lca fast based on RMQ with block decomposition

Pull Request - State: closed - Opened by PerretB over 3 years ago - 1 comment

#236 - Interop printing function with ETE Toolkit

Issue - State: open - Opened by PerretB over 3 years ago - 1 comment
Labels: feature request

#235 - add ref to notebook on fuzzy marker based segmentation

Pull Request - State: closed - Opened by PerretB over 3 years ago

#234 - add set_num_threads

Pull Request - State: closed - Opened by PerretB over 3 years ago - 1 comment

#233 - Drop Python 3.5, add Python 3.9

Pull Request - State: closed - Opened by PerretB almost 4 years ago - 1 comment

#232 - add preallocation options for undirected graphs

Pull Request - State: closed - Opened by PerretB almost 4 years ago - 1 comment

#231 - optimize regular graph adjacency iterators

Pull Request - State: closed - Opened by PerretB almost 4 years ago - 1 comment

#230 - Refactor bpt canonical

Pull Request - State: closed - Opened by PerretB almost 4 years ago - 1 comment

#229 - enforce gridgraph concept on regular graphs

Pull Request - State: closed - Opened by PerretB almost 4 years ago - 1 comment

#228 - Tree children

Pull Request - State: closed - Opened by PerretB almost 4 years ago - 1 comment

#227 - Python 3.5 -> 3.9

Issue - State: closed - Opened by PerretB almost 4 years ago - 2 comments

#226 - Bpt canonical from edge lists

Issue - State: closed - Opened by PerretB almost 4 years ago
Labels: enhancement

#225 - Memory usage of the tree structure

Issue - State: closed - Opened by PerretB almost 4 years ago
Labels: enhancement

#224 - GridGraph concept not automatically set

Issue - State: closed - Opened by PerretB almost 4 years ago
Labels: bug

#222 - Refactor bpt canonical

Pull Request - State: closed - Opened by PerretB almost 4 years ago - 1 comment

#221 - Filter tree functions now canonize their result by default

Pull Request - State: closed - Opened by PerretB almost 4 years ago - 1 comment

#220 - Refactor watershed hierarchy

Pull Request - State: closed - Opened by PerretB almost 4 years ago - 1 comment

#219 - Arg sort and lexicographic sorting

Pull Request - State: closed - Opened by PerretB almost 4 years ago - 1 comment

#218 - [FEATURE] Hierarchy from arbitrary ordering.

Issue - State: closed - Opened by JoOkuma almost 4 years ago - 4 comments
Labels: feature request

#216 - Better integration of LCAFast into the Tree class in python

Pull Request - State: closed - Opened by PerretB about 4 years ago - 1 comment

#215 - fix rag handling in filter_non_relevant_node_from_tree

Pull Request - State: closed - Opened by PerretB about 4 years ago - 1 comment

#214 - refactor lca fast serialization

Pull Request - State: closed - Opened by PerretB about 4 years ago - 1 comment

#213 - Bug report: filter_small_nodes_from_tree requires a bpt based on mst to work

Issue - State: closed - Opened by lnajman about 4 years ago - 2 comments
Labels: bug

#212 - Pickable classes

Pull Request - State: closed - Opened by PerretB about 4 years ago - 1 comment

#211 - improve regular graph API (make members private and add accessors)

Pull Request - State: closed - Opened by PerretB about 4 years ago - 1 comment

#210 - store attributes and tags within objects if possible

Pull Request - State: closed - Opened by PerretB about 4 years ago - 1 comment

#209 - add dynamic attribute support for exported c++ structures

Pull Request - State: closed - Opened by PerretB about 4 years ago - 1 comment

#208 - Update xcode in travis

Pull Request - State: closed - Opened by PerretB about 4 years ago - 1 comment

#206 - Sequential combine accumulator py example edited

Pull Request - State: closed - Opened by ritvik06 over 4 years ago - 2 comments

#205 - fix bug in watershed hierarchy

Pull Request - State: closed - Opened by PerretB over 4 years ago - 1 comment

#204 - Implicit 2 explicit graph

Pull Request - State: closed - Opened by PerretB over 4 years ago - 1 comment

#203 - fix wrong overload resolution in labelisation_seeded_watershed

Pull Request - State: closed - Opened by PerretB over 4 years ago - 1 comment

#202 - update libs

Pull Request - State: closed - Opened by PerretB over 4 years ago - 1 comment

#201 - Graph conversions

Pull Request - State: closed - Opened by PerretB over 4 years ago - 1 comment

#200 - fix: num_regions_ground_truth computation in fragmentation curves

Pull Request - State: closed - Opened by PerretB over 4 years ago - 1 comment

#199 - Improve Documentation

Pull Request - State: closed - Opened by PerretB over 4 years ago - 1 comment

#198 - Add monotonic regression

Pull Request - State: closed - Opened by PerretB over 4 years ago - 1 comment

#197 - Add the moment of inertia attribute

Pull Request - State: closed - Opened by deisemaia over 4 years ago - 6 comments

#196 - Some lines in the "tree" class documentation edited

Pull Request - State: closed - Opened by ritvik06 over 4 years ago - 2 comments

#194 - Attribute topological height

Pull Request - State: closed - Opened by PerretB over 4 years ago - 1 comment

#193 - Increasing altitudes asserts

Pull Request - State: closed - Opened by PerretB over 4 years ago - 1 comment

#192 - Add tree attribute: topological height

Issue - State: closed - Opened by PerretB over 4 years ago
Labels: feature request

#191 - HorizontalCutExplorer fails if altitudes are not increasing

Issue - State: closed - Opened by PerretB over 4 years ago
Labels: bug

#190 - sort_hierarchy_with_altitudes fails if altitudes are not increasing

Issue - State: closed - Opened by PerretB over 4 years ago
Labels: bug

#189 - HorizontalCutExplorer issue using binary_partition_tree_MumfordShah_energy

Issue - State: closed - Opened by lefevrej over 4 years ago - 3 comments

#188 - Shape normalization

Pull Request - State: closed - Opened by PerretB over 4 years ago

#187 - Ambiguous array comparison in delinearize_vertex_weights

Issue - State: closed - Opened by PerretB over 4 years ago
Labels: bug

#186 - Installation in windows 7

Issue - State: closed - Opened by Mirmahboub over 4 years ago - 3 comments

#185 - bug with assess_fragmentation_optimal_cut

Issue - State: closed - Opened by PerretB over 4 years ago
Labels: bug

#184 - attribute_volume and region adjacency graphs

Issue - State: open - Opened by PerretB over 4 years ago
Labels: feature request

#183 - Missing support for n>2 d regular graphs in Python

Issue - State: closed - Opened by PerretB over 4 years ago - 4 comments
Labels: feature request

#182 - Improve graph io

Issue - State: open - Opened by fguiotte over 4 years ago - 2 comments
Labels: feature request

#181 - Quick refactor of io

Pull Request - State: closed - Opened by fguiotte over 4 years ago - 2 comments

#180 - Fix assertion on num_attributes

Pull Request - State: closed - Opened by fguiotte over 4 years ago - 2 comments

#179 - Saving tree issue without attribute

Issue - State: closed - Opened by fguiotte over 4 years ago

#178 - Fix typo in pink_io

Pull Request - State: closed - Opened by fguiotte over 4 years ago - 2 comments

#177 - specify abi version in manylinux wheels

Pull Request - State: closed - Opened by PerretB over 4 years ago - 1 comment

#176 - Linux wheels ABI version

Issue - State: closed - Opened by PerretB over 4 years ago

#175 - TBB build options and documentation

Pull Request - State: closed - Opened by PerretB over 4 years ago - 1 comment

GitHub / higra/Higra issues and pull requests