hexylena/argparse2tool issues and pull requests

#73 - OutputParameter does not exist, it's OutputData. Also switch to GH Actions

Pull Request - State: closed - Opened by hexylena over 2 years ago

#72 - fix flake errors

Pull Request - State: closed - Opened by bernt-matthias almost 4 years ago

#71 - always exit when generating cwl from click

Pull Request - State: closed - Opened by bernt-matthias about 4 years ago - 2 comments

#70 - Add --command argument also to galaxy part

Pull Request - State: closed - Opened by bernt-matthias about 4 years ago

#69 - make loading of original module work also for environments containing "argparse2tool"

Pull Request - State: closed - Opened by bernt-matthias about 4 years ago

#68 - relocate argparse and click packages

Pull Request - State: closed - Opened by bernt-matthias about 4 years ago - 8 comments

#67 - Deployment updates

Pull Request - State: closed - Opened by hexylena about 4 years ago

#66 - Update to py3.6 testing and include license in package

Pull Request - State: closed - Opened by bernt-matthias about 4 years ago - 2 comments

#65 - [WIP]: changes that accumulate during working on checkm parsers

Pull Request - State: open - Opened by bernt-matthias over 4 years ago - 2 comments

#64 - Last Python 2.7 supported release will be on 2020-01-01 (or before)

Issue - State: open - Opened by mr-c about 5 years ago - 4 comments

#63 - some improvements

Pull Request - State: closed - Opened by bernt-matthias over 6 years ago

#62 - possible improvements

Issue - State: open - Opened by bernt-matthias over 6 years ago - 1 comment

#61 - galaxy subparser parity with cwl

Issue - State: closed - Opened by hexylena over 6 years ago - 5 comments
Labels: GalaxyXML

#60 - subparser parents

Issue - State: open - Opened by bernt-matthias over 6 years ago - 6 comments
Labels: GalaxyXML

#59 - invalid email, reducing to just the original

Pull Request - State: closed - Opened by hexylena over 6 years ago

#58 - sub parser tests

Pull Request - State: closed - Opened by hexylena over 6 years ago

#57 - No output with --generate_cwl_tool when ArgumentParser is instantiated with prog keyword

Issue - State: open - Opened by ksebby over 6 years ago - 3 comments
Labels: bug, CWL

#56 - fix issue?

Pull Request - State: closed - Opened by hexylena about 7 years ago
Labels: bug, GalaxyXML

#55 - modify cwl templates to output an empty array when no tool inputs

Pull Request - State: closed - Opened by hmenager about 7 years ago - 2 comments
Labels: bug, CWL

#54 - [galaxy] select field does not maintain ordering

Issue - State: open - Opened by hexylena over 7 years ago
Labels: GalaxyXML

#53 - Modify short description of the repository

Issue - State: closed - Opened by anton-khodak over 7 years ago

#52 - PR policy?

Issue - State: closed - Opened by mr-c over 7 years ago - 6 comments

#51 - [CWL] implement custom types and custom actions using strings

Issue - State: open - Opened by mr-c over 7 years ago
Labels: CWL

#50 - [CWL] ignore const

Issue - State: open - Opened by mr-c over 7 years ago
Labels: CWL

#49 - [CWL] implement nargs=N

Issue - State: open - Opened by mr-c over 7 years ago
Labels: CWL

#48 - [CWL] implement mutual exclusion

Issue - State: open - Opened by mr-c over 7 years ago
Labels: CWL

#47 - [CWL] Argparse argument groups can be represented with a CWL custom record type

Issue - State: open - Opened by mr-c over 7 years ago
Labels: CWL

#46 - Argparse2galaxy select field

Issue - State: closed - Opened by anton-khodak over 7 years ago - 3 comments

#45 - Revert "cwlVersion: v1.0 is good enough"

Pull Request - State: closed - Opened by anton-khodak over 7 years ago

#44 - single CWL optional types should use ? syntax

Issue - State: open - Opened by mr-c over 7 years ago
Labels: CWL

#43 - cwlVersion: v1.0 is good enough

Pull Request - State: closed - Opened by mr-c over 7 years ago - 2 comments

#42 - correct foo parameter type

Pull Request - State: closed - Opened by hmenager over 7 years ago - 1 comment

#41 - Fix Travis checks

Issue - State: closed - Opened by anton-khodak over 7 years ago - 6 comments

#40 - handle if ArgumentParser.print_version() absent

Pull Request - State: closed - Opened by hmenager over 7 years ago - 8 comments

#39 - map by default parameter types to string

Pull Request - State: closed - Opened by hmenager over 7 years ago - 3 comments

#38 - Update galaxyxml

Pull Request - State: closed - Opened by hexylena over 7 years ago

#37 - import `future` only when needed

Issue - State: open - Opened by anton-khodak over 7 years ago

#36 - compare argcomplete's method for argparse introspection

Issue - State: open - Opened by mr-c over 7 years ago - 3 comments

#35 - 'str' type is not used in CWL v1.0.20161128202906 (RDFLib 4.2.1)

Issue - State: closed - Opened by MatthewRalston almost 8 years ago - 1 comment

#34 - convert py3 tests to py2 compatible versions

Issue - State: open - Opened by mr-c almost 8 years ago

#33 - Update release process

Issue - State: closed - Opened by hexylena almost 8 years ago

#32 - Merge argparse2cwl + gxargparse

Pull Request - State: closed - Opened by anton-khodak almost 8 years ago - 6 comments

#31 - [WIP] merge in CWL functionality

Pull Request - State: closed - Opened by mr-c over 8 years ago - 1 comment

#30 - error: unrecognized arguments: --generate-galaxy-xml

Issue - State: closed - Opened by alexlenail over 8 years ago - 3 comments

#29 - Is gxargparse installed or not?

Issue - State: closed - Opened by alexlenail over 8 years ago - 2 comments

#28 - Uninstall?

Issue - State: closed - Opened by alexlenail over 8 years ago - 2 comments

#27 - [WIP] CWL refactor

Pull Request - State: closed - Opened by mr-c almost 9 years ago - 1 comment
Labels: wip

#26 - use longest option name

Pull Request - State: closed - Opened by mr-c about 9 years ago - 4 comments

#25 - inherit from the real ArgumentParser

Pull Request - State: closed - Opened by mr-c about 9 years ago - 6 comments

#24 - Attribute ordering on XML

Issue - State: open - Opened by hexylena about 9 years ago - 1 comment
Labels: GalaxyXML

#23 - More useful output name than "default"

Issue - State: open - Opened by hexylena over 9 years ago
Labels: enhancement, GalaxyXML

#22 - Generate warnings if options have dashes in them.

Issue - State: open - Opened by hexylena over 9 years ago - 1 comment
Labels: GalaxyXML

#21 - enable Formatter

Pull Request - State: closed - Opened by bgruening over 9 years ago - 3 comments

#20 - action groups should be supported

Issue - State: open - Opened by bgruening over 9 years ago - 4 comments

#19 - Epilog shouldn't be required

Issue - State: closed - Opened by hexylena over 9 years ago

#18 - Support gxxml sections

Issue - State: open - Opened by hexylena over 9 years ago
Labels: GalaxyXML

#17 - Flags are in label, not help

Issue - State: closed - Opened by hexylena over 9 years ago

#16 - Positionals are documented in help text

Issue - State: closed - Opened by hexylena over 9 years ago

#15 - Output file detection

Issue - State: closed - Opened by hexylena over 9 years ago - 2 comments

#14 - choices should use selected="true" instead of checked=""

Issue - State: closed - Opened by hexylena over 9 years ago

#13 - Select may be lacking a type

Issue - State: closed - Opened by hexylena over 9 years ago - 1 comment

#12 - Overuse of checks for variable presence on required, positional arguments.

Issue - State: open - Opened by hexylena over 9 years ago
Labels: enhancement

#11 - prefix_chars not supported

Issue - State: open - Opened by hexylena over 9 years ago - 5 comments
Labels: bug

#10 - Extended API usage

Issue - State: open - Opened by hexylena over 9 years ago - 2 comments
Labels: help wanted

#9 - Need output file API

Issue - State: closed - Opened by hexylena over 9 years ago - 1 comment

#8 - support choices=

Issue - State: closed - Opened by hexylena over 9 years ago

#7 - Is force_history_refresh="false" really the correct default?

Issue - State: closed - Opened by hexylena over 9 years ago - 5 comments

#6 - falsevalue must be specified or defaults to 'False'

Issue - State: closed - Opened by hexylena over 9 years ago

#5 - type=int not using default value

Issue - State: closed - Opened by hexylena over 9 years ago

#4 - bug

Issue - State: closed - Opened by hexylena over 9 years ago - 1 comment

#3 - `positional=true` needs to be scrubbed

Issue - State: closed - Opened by hexylena over 9 years ago

#2 - nargs='1' on positional argument fails

Issue - State: closed - Opened by hexylena over 9 years ago

#1 - param withouth nargs='?' fails incorrectly.

Issue - State: closed - Opened by hexylena over 9 years ago

GitHub / hexylena/argparse2tool issues and pull requests