Ecosyste.ms: Issues

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GitHub / hetio/hetnetpy issues and pull requests

#51 - Help required with understanding path-degree product calculation

Issue - State: closed - Opened by yuvaramsingh94 5 months ago - 2 comments

#50 - change find_one function in neo4j.py

Pull Request - State: open - Opened by maggielee1111 over 1 year ago

#49 - basic how-to

Issue - State: open - Opened by Travis-Barton about 2 years ago - 3 comments

#48 - retire python 3.4, add python 3.8

Pull Request - State: closed - Opened by dhimmel almost 5 years ago

#47 - neo4j.construct_pdp_query: aggregate_columns option to return PC & DWPC

Pull Request - State: closed - Opened by dhimmel over 5 years ago

#46 - Reformat using black

Pull Request - State: closed - Opened by dhimmel over 5 years ago - 1 comment

#45 - CI for Windows using AppVeyor

Pull Request - State: closed - Opened by dhimmel over 5 years ago

#44 - Return numpy ndarrays not matrices

Issue - State: closed - Opened by dhimmel over 5 years ago - 1 comment

#43 - Housekeeping: travis and setup updates

Pull Request - State: closed - Opened by dhimmel over 5 years ago

#42 - Rename codebase to use hetnetpy from hetio

Pull Request - State: closed - Opened by dhimmel over 5 years ago

#41 - v0.2.11 release to warn about hetnetpy rename

Pull Request - State: closed - Opened by dhimmel over 5 years ago

#40 - Rename this software to hetnetpy

Issue - State: closed - Opened by vincerubinetti over 5 years ago - 5 comments

#39 - Create single object for symmetric metapath and its inverse

Pull Request - State: closed - Opened by dhimmel over 5 years ago

#38 - Symmetric metapaths are their own inverse

Issue - State: closed - Opened by dhimmel over 5 years ago

#37 - Migrate neo4j nomenclature to hetnet module

Pull Request - State: closed - Opened by dhimmel over 5 years ago

#36 - create_path_return_clause: id_lists option

Pull Request - State: closed - Opened by dhimmel over 5 years ago

#35 - Lazy import third-party deps in hetio.neo4j

Pull Request - State: closed - Opened by dhimmel over 5 years ago

#34 - Changed PERCENT_OF_DWPC to percent_of_DWPC

Pull Request - State: closed - Opened by ben-heil almost 6 years ago

#33 - Optimize, refactor, and add tests to construct_pdp_query

Pull Request - State: closed - Opened by ben-heil almost 6 years ago

#32 - Added a version check before calling http.socket_timeout

Pull Request - State: closed - Opened by ben-heil almost 6 years ago - 6 comments

#31 - py2neo version 4 doesn't have an httpstream package

Issue - State: closed - Opened by ben-heil almost 6 years ago - 2 comments

#30 - Added the function construct_pdp_query to build cypher queries that c…

Pull Request - State: closed - Opened by ben-heil almost 6 years ago - 2 comments

#29 - Make inplace permutation optional

Pull Request - State: closed - Opened by zietzm almost 6 years ago

#28 - hetio.permute.permute_pair_list modifies pair_list in place

Issue - State: closed - Opened by zietzm almost 6 years ago - 1 comment

#27 - Consistent metanode/metaedge/metapath .abbrev property

Pull Request - State: closed - Opened by dhimmel about 6 years ago

#26 - Corrected typo in permute_pair_list docstring

Pull Request - State: closed - Opened by kkloste about 6 years ago

#25 - Upgrade to v0.2.9

Pull Request - State: closed - Opened by dhimmel about 6 years ago

#24 - Document hetio.permute functions

Pull Request - State: closed - Opened by dhimmel over 6 years ago - 2 comments

#23 - Relocate repo from dhimmel/hetio to hetio/hetio

Pull Request - State: closed - Opened by dhimmel over 6 years ago

#22 - Enable edge/path sorting

Pull Request - State: closed - Opened by dhimmel over 6 years ago

#21 - Add count_nodes function

Pull Request - State: closed - Opened by dhimmel over 6 years ago

#20 - Update sparsify for faster computation.

Pull Request - State: closed - Opened by zietzm over 6 years ago

#19 - Convenience function: metagraph.get_metapath

Pull Request - State: closed - Opened by dhimmel over 6 years ago

#18 - Metanode and metaedge getter methods for metagraph

Pull Request - State: closed - Opened by dhimmel over 6 years ago

#17 - metaedge_to_adjacency_matrix as a Graph class method?

Issue - State: closed - Opened by dhimmel over 6 years ago - 1 comment

#16 - Permuting Specific Genes Option

Issue - State: open - Opened by gwaybio over 6 years ago - 1 comment

#15 - Add warning for the scipy bug if numpy.float16 is passed.

Pull Request - State: closed - Opened by zietzm over 6 years ago

#14 - extract_all_metapaths: get all metapaths for any source/target metanodes

Pull Request - State: closed - Opened by dhimmel over 6 years ago - 2 comments

#13 - Adding Integer translation of metaedges from metapath

Pull Request - State: closed - Opened by gwaybio over 6 years ago - 3 comments

#12 - hetio.abbreviation.metaedges_from_metapath breaks for integers

Issue - State: closed - Opened by gwaybio over 6 years ago - 2 comments

#11 - Migrate hetnet to matrix code from greenelab/hetmech

Pull Request - State: closed - Opened by dhimmel over 6 years ago - 2 comments

#10 - Hetio v0.2.3 breaks integration code

Issue - State: closed - Opened by veleritas over 7 years ago - 6 comments

#9 - Add continuous deployment

Pull Request - State: closed - Opened by dhimmel over 7 years ago - 1 comment

#8 - Add py2neo version 3 URI compatibility

Pull Request - State: closed - Opened by veleritas over 7 years ago - 6 comments

#7 - Use setup.cfg to use README.md for PyPI description

Issue - State: closed - Opened by dhimmel over 7 years ago - 2 comments

#6 - Add compatibility to work with py2neo version 3.1.2

Pull Request - State: closed - Opened by veleritas over 7 years ago - 3 comments

#5 - Speeding up the Neo4j import

Issue - State: open - Opened by veleritas almost 8 years ago - 11 comments

#4 - Py2neo 3 compatibility

Issue - State: closed - Opened by veleritas almost 8 years ago - 6 comments

#3 - CC licence isn't recommended for source code

Issue - State: closed - Opened by ghost almost 8 years ago - 2 comments

#2 - Package does not install with pip

Issue - State: closed - Opened by veleritas about 8 years ago - 7 comments

#1 - Automatic abbreviation code and kind_to_abbrev safety checks

Issue - State: closed - Opened by dhimmel about 9 years ago