Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / hemberg-lab/sc3 issues and pull requests
#111 - Question about <NA> labels from cell clustering via SC3
Issue -
State: closed - Opened by yxy92 10 months ago
- 1 comment
#110 - sc3_run_svm has a prediction issue
Issue -
State: closed - Opened by jmuribes over 1 year ago
- 2 comments
#109 - Running SC3 in integrated data
Issue -
State: closed - Opened by anemartinezlarrinaga2898 almost 2 years ago
- 1 comment
#108 - could not find function "calculate_distance"
Issue -
State: open - Opened by irtisha about 2 years ago
- 2 comments
#107 - long vectors are not supported in .C
Issue -
State: closed - Opened by zhangtongda over 2 years ago
- 1 comment
#107 - long vectors are not supported in .C
Issue -
State: closed - Opened by zhangtongda over 2 years ago
- 1 comment
#106 - Saving SC3 clustering output as csv files
Issue -
State: closed - Opened by bsamal20 almost 3 years ago
- 3 comments
#106 - Saving SC3 clustering output as csv files
Issue -
State: closed - Opened by bsamal20 almost 3 years ago
- 3 comments
#105 - saving SC3 output
Issue -
State: open - Opened by bsamal20 almost 3 years ago
#104 - rewritten parallelism to BiocParallel package
Pull Request -
State: open - Opened by gorgitko over 3 years ago
- 6 comments
#103 - one node produced an error: Error in ED2(data)
Issue -
State: open - Opened by eshraaqsaeed over 3 years ago
- 1 comment
#103 - one node produced an error: Error in ED2(data)
Issue -
State: open - Opened by eshraaqsaeed over 3 years ago
- 1 comment
#102 - The Perl script 'WriteXLS.pl' failed to run successfully.
Issue -
State: open - Opened by UnkownNames over 3 years ago
#102 - The Perl script 'WriteXLS.pl' failed to run successfully.
Issue -
State: open - Opened by UnkownNames over 3 years ago
#101 - Error in rowSums(out_pathway) : 'x' must be an array of at least two dimensions
Issue -
State: closed - Opened by zina-R about 4 years ago
- 1 comment
#101 - Error in rowSums(out_pathway) : 'x' must be an array of at least two dimensions
Issue -
State: closed - Opened by zina-R about 4 years ago
- 1 comment
#100 - sc3_kmeans produces "Warning message: Quick-TRANSfer stage steps exceeded maximum (= 250000)"
Issue -
State: closed - Opened by MikeHala about 4 years ago
- 1 comment
#99 - Which remove-batch-effect package work best with SC3?
Issue -
State: closed - Opened by kuang-da over 4 years ago
- 1 comment
#98 - Sparse matrix causes errors
Issue -
State: closed - Opened by RebekkaWegmann almost 5 years ago
- 2 comments
#98 - Sparse matrix causes errors
Issue -
State: closed - Opened by RebekkaWegmann almost 5 years ago
- 2 comments
#97 - Error in prcomp.default
Issue -
State: closed - Opened by dsimps1993 about 5 years ago
- 4 comments
#96 - each element of 'reducedDims' must be a matrix-like object with nrow equal to 'ncol(object)
Issue -
State: open - Opened by makimenkova about 5 years ago
- 1 comment
#96 - each element of 'reducedDims' must be a matrix-like object with nrow equal to 'ncol(object)
Issue -
State: open - Opened by makimenkova about 5 years ago
- 1 comment
#95 - Gene names lost after get_marker_genes()
Issue -
State: open - Opened by friedue over 5 years ago
#95 - Gene names lost after get_marker_genes()
Issue -
State: open - Opened by friedue over 5 years ago
#94 - Plot expression on given list of genes
Issue -
State: closed - Opened by shabs24 over 5 years ago
- 1 comment
#94 - Plot expression on given list of genes
Issue -
State: closed - Opened by shabs24 over 5 years ago
- 1 comment
#93 - Clustering for more than 10000 Genes
Issue -
State: closed - Opened by hkarakurt8742 over 5 years ago
- 3 comments
#93 - Clustering for more than 10000 Genes
Issue -
State: closed - Opened by hkarakurt8742 over 5 years ago
- 3 comments
#92 - SC3 with Batch Correction
Issue -
State: closed - Opened by hkarakurt8742 over 5 years ago
- 1 comment
#92 - SC3 with Batch Correction
Issue -
State: closed - Opened by hkarakurt8742 over 5 years ago
- 1 comment
#91 - How to calculate D?
Issue -
State: closed - Opened by XiHuYan over 5 years ago
- 4 comments
#91 - How to calculate D?
Issue -
State: closed - Opened by XiHuYan over 5 years ago
- 4 comments
#90 - Copy transformations to @reducedDims when possible
Pull Request -
State: closed - Opened by nh3 over 5 years ago
#90 - Copy transformations to @reducedDims when possible
Pull Request -
State: closed - Opened by nh3 over 5 years ago
#89 - Fixed the sparse matrix issue
Pull Request -
State: open - Opened by zhangguy over 5 years ago
- 1 comment
#89 - Fixed the sparse matrix issue
Pull Request -
State: open - Opened by zhangguy over 5 years ago
- 1 comment
#88 - error running sc3_plot_de_genes
Issue -
State: open - Opened by qiaowei-vvjoe over 5 years ago
- 8 comments
#88 - error running sc3_plot_de_genes
Issue -
State: open - Opened by qiaowei-vvjoe over 5 years ago
- 8 comments
#87 - No gene names in export results
Issue -
State: open - Opened by dsimps1993 almost 6 years ago
- 4 comments
#87 - No gene names in export results
Issue -
State: open - Opened by dsimps1993 almost 6 years ago
- 4 comments
#86 - SC3 error on linux server: Not compatible with requested type
Issue -
State: closed - Opened by LuyiTian almost 6 years ago
- 5 comments
#86 - SC3 error on linux server: Not compatible with requested type
Issue -
State: closed - Opened by LuyiTian almost 6 years ago
- 5 comments
#85 - Which data type for clustering
Issue -
State: closed - Opened by mkrzak about 6 years ago
- 2 comments
#85 - Which data type for clustering
Issue -
State: closed - Opened by mkrzak about 6 years ago
- 2 comments
#84 - sc3_plot_de_genes and sc3_plot_markers problems
Issue -
State: closed - Opened by Santos22903 about 6 years ago
- 2 comments
#84 - sc3_plot_de_genes and sc3_plot_markers problems
Issue -
State: closed - Opened by Santos22903 about 6 years ago
- 2 comments
#83 - Consider using Forks for parallelism?
Issue -
State: closed - Opened by Shians about 6 years ago
- 3 comments
#83 - Consider using Forks for parallelism?
Issue -
State: closed - Opened by Shians about 6 years ago
- 3 comments
#82 - is it possible to surpress the message in `sc3` function.
Issue -
State: open - Opened by LuyiTian about 6 years ago
- 1 comment
#82 - is it possible to surpress the message in `sc3` function.
Issue -
State: open - Opened by LuyiTian about 6 years ago
- 1 comment
#81 - #UMI counts table
Issue -
State: closed - Opened by penglbio about 6 years ago
- 1 comment
#80 - Small suggestion for sc3_prepare() documentation
Issue -
State: open - Opened by PeteHaitch about 6 years ago
- 1 comment
Labels: enhancement
#80 - Small suggestion for sc3_prepare() documentation
Issue -
State: open - Opened by PeteHaitch about 6 years ago
- 1 comment
Labels: enhancement
#79 - Plot column names
Issue -
State: open - Opened by simone-rizzetto about 6 years ago
- 1 comment
Labels: enhancement
#79 - Plot column names
Issue -
State: open - Opened by simone-rizzetto about 6 years ago
- 1 comment
Labels: enhancement
#78 - Specify custom genes/features
Issue -
State: closed - Opened by royfrancis about 6 years ago
- 1 comment
#78 - Specify custom genes/features
Issue -
State: closed - Opened by royfrancis about 6 years ago
- 1 comment
#77 - Clusters for max 5000 cells
Issue -
State: closed - Opened by julien-roux over 6 years ago
- 2 comments
#77 - Clusters for max 5000 cells
Issue -
State: closed - Opened by julien-roux over 6 years ago
- 2 comments
#76 - SC3 repeatedly loads packages while running and has data display issues
Issue -
State: closed - Opened by jamesrhowe over 6 years ago
- 3 comments
#76 - SC3 repeatedly loads packages while running and has data display issues
Issue -
State: closed - Opened by jamesrhowe over 6 years ago
- 3 comments
#75 - Not clear how SC3 exactly works
Issue -
State: closed - Opened by CodeInTheSkies over 6 years ago
- 5 comments
#75 - Not clear how SC3 exactly works
Issue -
State: closed - Opened by CodeInTheSkies over 6 years ago
- 5 comments
#74 - Error in checkForRemoteErrors(val) : 3 nodes produced errors; first error: Error in ED2(data) : Not compatible with requested type: [type=S4; target=double].
Issue -
State: closed - Opened by JesusCorria over 6 years ago
- 2 comments
#74 - Error in checkForRemoteErrors(val) : 3 nodes produced errors; first error: Error in ED2(data) : Not compatible with requested type: [type=S4; target=double].
Issue -
State: closed - Opened by JesusCorria over 6 years ago
- 2 comments
#73 - Error in `[.default`(clusts, , paste0("sc3_", hash.table[i, 1], "_clusters"))
Issue -
State: open - Opened by DrLucyMac over 6 years ago
- 10 comments
#72 - Error in checkForRemoteErrors(val) :
Issue -
State: closed - Opened by 15084921898 over 6 years ago
- 2 comments
#72 - Error in checkForRemoteErrors(val) :
Issue -
State: closed - Opened by 15084921898 over 6 years ago
- 2 comments
#71 - Excluding principal components from clustering
Issue -
State: closed - Opened by martabrozynska over 6 years ago
- 2 comments
#71 - Excluding principal components from clustering
Issue -
State: closed - Opened by martabrozynska over 6 years ago
- 2 comments
#70 - Annotation colour palette in heatmaps
Issue -
State: open - Opened by wikiselev over 6 years ago
Labels: enhancement
#70 - Annotation colour palette in heatmaps
Issue -
State: open - Opened by wikiselev over 6 years ago
Labels: enhancement
#69 - Pass k_estimate results if ks is NULL; fixes #67
Pull Request -
State: closed - Opened by pati-ni over 6 years ago
#69 - Pass k_estimate results if ks is NULL; fixes #67
Pull Request -
State: closed - Opened by pati-ni over 6 years ago
#68 - Large number of NA's when run on large dataset.
Issue -
State: closed - Opened by TChan92 over 6 years ago
- 17 comments
#68 - Large number of NA's when run on large dataset.
Issue -
State: closed - Opened by TChan92 over 6 years ago
- 17 comments
#67 - k_estimator output not passed to sc3 wrapper function
Issue -
State: closed - Opened by leonfodoulian over 6 years ago
- 1 comment
#67 - k_estimator output not passed to sc3 wrapper function
Issue -
State: closed - Opened by leonfodoulian over 6 years ago
- 1 comment
#66 - Feature request: option to specify assay used
Issue -
State: closed - Opened by dkoppstein over 6 years ago
- 5 comments
#66 - Feature request: option to specify assay used
Issue -
State: closed - Opened by dkoppstein over 6 years ago
- 5 comments
#65 - show_pdata errors in sc3_plot_expression(), sc3_plot_de_genes(), sc3_plot_markers(), but not sc3_plot_consensus()
Issue -
State: closed - Opened by KeelyDulmage over 6 years ago
- 4 comments
#65 - show_pdata errors in sc3_plot_expression(), sc3_plot_de_genes(), sc3_plot_markers(), but not sc3_plot_consensus()
Issue -
State: closed - Opened by KeelyDulmage over 6 years ago
- 4 comments
#64 - Error in ED2(data)
Issue -
State: closed - Opened by biosyssun over 6 years ago
- 3 comments
#64 - Error in ED2(data)
Issue -
State: closed - Opened by biosyssun over 6 years ago
- 3 comments
#63 - default for `n_cores`
Issue -
State: closed - Opened by stephaniehicks over 6 years ago
- 1 comment
#63 - default for `n_cores`
Issue -
State: closed - Opened by stephaniehicks over 6 years ago
- 1 comment
#62 - export plot from SC3
Issue -
State: closed - Opened by MichaelPeibo over 6 years ago
- 2 comments
#62 - export plot from SC3
Issue -
State: closed - Opened by MichaelPeibo over 6 years ago
- 2 comments
#61 - first error: Error in transf[, 1:hash.table$n_dim[i]] : incorrect number of dimensions
Issue -
State: closed - Opened by Jayjay601 almost 7 years ago
- 15 comments
#61 - first error: Error in transf[, 1:hash.table$n_dim[i]] : incorrect number of dimensions
Issue -
State: closed - Opened by Jayjay601 almost 7 years ago
- 15 comments
#60 - Is there a way to pull out the stability index matrix from the SC3 object?
Issue -
State: open - Opened by yingzhang121 almost 7 years ago
- 7 comments
Labels: enhancement
#60 - Is there a way to pull out the stability index matrix from the SC3 object?
Issue -
State: open - Opened by yingzhang121 almost 7 years ago
- 7 comments
Labels: enhancement
#59 - Error in !isSpike(object) : invalid argument type
Issue -
State: open - Opened by yicheinchang almost 7 years ago
- 3 comments
Labels: enhancement
#59 - Error in !isSpike(object) : invalid argument type
Issue -
State: open - Opened by yicheinchang almost 7 years ago
- 3 comments
Labels: enhancement
#58 - Update calculate_stability.Rd
Pull Request -
State: closed - Opened by tallulandrews almost 7 years ago
- 1 comment
#58 - Update calculate_stability.Rd
Pull Request -
State: closed - Opened by tallulandrews almost 7 years ago
- 1 comment
#57 - Remove one N from the denominator of stability
Pull Request -
State: closed - Opened by tallulandrews almost 7 years ago
- 2 comments
#57 - Remove one N from the denominator of stability
Pull Request -
State: closed - Opened by tallulandrews almost 7 years ago
- 2 comments
#56 - Performance Enhancements, Laplacian matrix improvements
Pull Request -
State: closed - Opened by pati-ni almost 7 years ago