helxplatform/dug issues and pull requests

#278 - Bump redis from 4.4.2 to 4.4.4

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 2 comments
Labels: dependencies

#277 - Bump redis from 4.4.2 to 4.5.3

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#276 - Async web api

Pull Request - State: closed - Opened by YaphetKG almost 2 years ago - 1 comment

#275 - Release 2.9.7

Pull Request - State: closed - Opened by YaphetKG about 2 years ago

#274 - Dev master sync

Pull Request - State: closed - Opened by YaphetKG about 2 years ago

#273 - Lib bump

Pull Request - State: closed - Opened by YaphetKG about 2 years ago

#272 - Release 2.9.6

Pull Request - State: closed - Opened by YaphetKG about 2 years ago

#271 - adding dug installer in makefile

Pull Request - State: closed - Opened by YaphetKG about 2 years ago

#270 - Bacpac parser

Pull Request - State: closed - Opened by YaphetKG about 2 years ago

#269 - Bump certifi from 2020.12.5 to 2022.12.7

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#268 - Implement auto versioning and add commit-msg hook

Pull Request - State: closed - Opened by Hoid over 2 years ago

#267 - Coverage and Makefile improvements

Pull Request - State: closed - Opened by Hoid over 2 years ago

#266 - Release/2.9.5

Pull Request - State: closed - Opened by YaphetKG over 2 years ago - 1 comment

#265 - update with develop

Pull Request - State: closed - Opened by YaphetKG over 2 years ago

#264 - Sprint

Pull Request - State: closed - Opened by YaphetKG over 2 years ago

#263 - Improving the scaling of Dug

Issue - State: closed - Opened by hhiles over 2 years ago - 2 comments
Labels: Scaling

#262 - Master to develop sync

Pull Request - State: closed - Opened by YaphetKG over 2 years ago

#261 - Improve NER on Dug

Issue - State: closed - Opened by hhiles over 2 years ago - 2 comments
Labels: NER

#260 - Release/2.9.4

Pull Request - State: closed - Opened by YaphetKG over 2 years ago

#259 - Release/2.9.4

Pull Request - State: closed - Opened by YaphetKG over 2 years ago

#258 - TranQL Schema Construction/Caching

Issue - State: closed - Opened by frostyfan109 over 2 years ago - 1 comment
Labels: TranQL

#257 - Database schema (Data source repository)

Issue - State: closed - Opened by YaphetKG over 2 years ago - 1 comment
Labels: Scaling

#256 - Define ingestion process and implement v1

Issue - State: closed - Opened by krobasky over 2 years ago - 5 comments
Labels: HEAL, in jira

#255 - ingest the Ousmane dataset

Issue - State: closed - Opened by krobasky over 2 years ago - 5 comments
Labels: HEAL

#254 - Incomplete concept results

Issue - State: closed - Opened by frostyfan109 over 2 years ago - 2 comments
Labels: bug

#253 - Bump mistune from 0.8.4 to 2.0.3

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#252 - identify user metrics for dug

Issue - State: closed - Opened by hhiles over 2 years ago - 1 comment
Labels: Metrics, in jira

#251 - updated internal documentation

Issue - State: closed - Opened by hhiles over 2 years ago
Labels: documentation, in jira

#250 - updated user-facing documentation

Issue - State: closed - Opened by hhiles over 2 years ago
Labels: documentation, in jira

#249 - A user can create a json file of Dug search results to take outside of Dug for further analyses

Issue - State: closed - Opened by hhiles over 2 years ago - 3 comments
Labels: UI, in jira

#248 - More parsers

Pull Request - State: closed - Opened by YaphetKG over 2 years ago

#247 - Use pipeline-utils

Pull Request - State: closed - Opened by Hoid over 2 years ago

#246 - More parsers

Pull Request - State: closed - Opened by YaphetKG over 2 years ago

#245 - Jenkins test merge to develop

Pull Request - State: closed - Opened by cnbennett3 over 2 years ago

#244 - Release 2.9.3

Pull Request - State: closed - Opened by YaphetKG over 2 years ago

#243 - Release/2.9.3

Pull Request - State: closed - Opened by YaphetKG over 2 years ago - 1 comment

#242 - Jenkins test merge

Pull Request - State: closed - Opened by cnbennett3 over 2 years ago

#241 - Update README.md

Pull Request - State: open - Opened by hhiles over 2 years ago

#240 - Github webhooks check

Pull Request - State: closed - Opened by Hoid over 2 years ago - 2 comments

#239 - How to handle "disease" as text in a search?

Issue - State: closed - Opened by cbizon over 2 years ago - 2 comments
Labels: in jira

#238 - redundant (disease) (disease)

Issue - State: closed - Opened by cbizon over 2 years ago - 3 comments
Labels: UI

#237 - Patchy results for gene/drug queries

Issue - State: closed - Opened by cbizon over 2 years ago - 4 comments
Labels: in jira

#236 - Question: What should a search for CHD return?

Issue - State: closed - Opened by cbizon over 2 years ago - 4 comments
Labels: in jira

#235 - Stray ")" in knowledge graph

Issue - State: closed - Opened by cbizon over 2 years ago - 1 comment
Labels: UI

#234 - Update _version.py

Pull Request - State: closed - Opened by YaphetKG over 2 years ago

#233 - Feature/summary api

Pull Request - State: closed - Opened by braswent over 2 years ago - 1 comment

#232 - Ncpi index fix

Pull Request - State: closed - Opened by alexwaldrop over 2 years ago - 4 comments

#231 - Biolink type-based filtering

Issue - State: closed - Opened by frostyfan109 over 2 years ago - 4 comments
Labels: UI

#230 - Variable View

Issue - State: closed - Opened by hhiles over 2 years ago - 12 comments
Labels: UI, in jira

#229 - dug dump concepts api created and tested

Pull Request - State: closed - Opened by braswent over 2 years ago - 1 comment

#228 - Search UI Autocomplete

Issue - State: closed - Opened by frostyfan109 over 2 years ago
Labels: UI, TranQL

#227 - Scigraph change

Pull Request - State: closed - Opened by YaphetKG almost 3 years ago - 2 comments

#226 - Tranql Auto-complete

Issue - State: closed - Opened by YaphetKG almost 3 years ago - 3 comments
Labels: TranQL

#225 - Simplification and Normalization of Standard Apps Deployment

Issue - State: open - Opened by hhiles almost 3 years ago - 2 comments
Labels: HEAL

#224 - Epic: HEAL Harmonization

Issue - State: open - Opened by hhiles almost 3 years ago - 7 comments
Labels: HEAL

#223 - Bio-NER for Dug on HEAL

Issue - State: closed - Opened by hhiles almost 3 years ago - 1 comment
Labels: HEAL

#222 - Tranql - Redis connection bug

Issue - State: closed - Opened by hhiles almost 3 years ago - 2 comments
Labels: HEAL, TranQL

#221 - CDE Harmonization

Issue - State: closed - Opened by hhiles almost 3 years ago - 19 comments
Labels: in jira

#220 - What would it take to get Dug/HeLx Separation?

Issue - State: closed - Opened by hhiles almost 3 years ago
Labels: SPIKE, in jira

#219 - Investigate and use Dag Factory for Roger workflow

Issue - State: closed - Opened by hhiles almost 3 years ago - 3 comments

#218 - Harmonization phase2

Issue - State: closed - Opened by hhiles almost 3 years ago - 3 comments
Labels: in jira

#217 - Semantic Search Metrics

Issue - State: closed - Opened by hhiles almost 3 years ago - 1 comment

#216 - Tranql Support for SKIP and LIMIT as keywords instead of where conditions

Issue - State: closed - Opened by hhiles almost 3 years ago

#215 - investigate new "expand" icons for dug interface

Issue - State: closed - Opened by hhiles almost 3 years ago
Labels: UI

#214 - implement a user's search history in their user profile

Issue - State: closed - Opened by hhiles almost 3 years ago
Labels: UI, in jira

#213 - give dug users context for missing search tiles

Issue - State: closed - Opened by hhiles almost 3 years ago - 2 comments
Labels: UI, in jira

#212 - add new dug results grouped by top level variables and studies

Issue - State: open - Opened by hhiles almost 3 years ago
Labels: UI

#211 - Change sync ARAGORN query to be truly synchronous

Issue - State: closed - Opened by hhiles almost 3 years ago - 4 comments
Labels: Translator

#210 - Annotation Performance Tweaks for Dug deployment

Issue - State: closed - Opened by hhiles almost 3 years ago - 2 comments

#209 - Release/2.9.2

Pull Request - State: closed - Opened by YaphetKG almost 3 years ago

#208 - Anvil parser

Pull Request - State: closed - Opened by YaphetKG almost 3 years ago - 1 comment

#207 - Anvil

Pull Request - State: closed - Opened by alexwaldrop almost 3 years ago

#206 - Update _version.py

Pull Request - State: closed - Opened by YaphetKG almost 3 years ago

#205 - Release/2.9.1

Pull Request - State: closed - Opened by YaphetKG almost 3 years ago

#204 - Changed DbGaP to SPARC in the scicrunch parser

Pull Request - State: closed - Opened by HowardLander almost 3 years ago

#198 - Release/2.8.0

Pull Request - State: closed - Opened by YaphetKG about 3 years ago - 4 comments

#190 - Release/2.6

Pull Request - State: closed - Opened by YaphetKG over 3 years ago

#188 - Bumping version

Pull Request - State: closed - Opened by cschreep over 3 years ago

#182 - Release/2.5.0

Pull Request - State: closed - Opened by YaphetKG over 3 years ago

#168 - NGINX server for search data

Issue - State: closed - Opened by cschreep over 3 years ago - 1 comment
Labels: cruft

#167 - Test coverage for Tranql Interface

Issue - State: closed - Opened by YaphetKG over 3 years ago
Labels: cruft

#166 - Bump urllib3 from 1.25.11 to 1.26.5

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment

#163 - HEAL - Enable Ingest of NIDA metadata (NIDA Datashare Parser)

Issue - State: closed - Opened by jcheadle-rti over 3 years ago - 4 comments
Labels: cruft

#162 - PhenX Parser

Issue - State: closed - Opened by cschreep over 3 years ago - 2 comments
Labels: cruft

#161 - Update Quickstart

Issue - State: closed - Opened by cschreep over 3 years ago
Labels: documentation, cruft, in jira

#160 - Error handling on empty results

Issue - State: closed - Opened by cschreep over 3 years ago - 1 comment
Labels: cruft

#159 - Feature/phenx parser

Pull Request - State: closed - Opened by YaphetKG over 3 years ago - 1 comment

#157 - Automatic backups

Issue - State: closed - Opened by cschreep over 3 years ago - 5 comments
Labels: cruft

#136 - Multistage Docker build

Issue - State: closed - Opened by cschreep almost 4 years ago - 2 comments
Labels: cruft, in jira

#122 - Create status check for Dug

Issue - State: closed - Opened by cschreep almost 4 years ago - 4 comments
Labels: cruft

#121 - Error handling around reading tags file

Issue - State: closed - Opened by cschreep almost 4 years ago
Labels: cruft

#111 - - integrates Trapi 1.0

Pull Request - State: closed - Opened by YaphetKG almost 4 years ago - 1 comment

#83 - Draft - update documentation to better reflect current dug practices

Pull Request - State: closed - Opened by jcheadle-rti about 4 years ago - 3 comments

#25 - Add cronjob and minikube instructions

Pull Request - State: closed - Opened by cmball1 over 4 years ago - 3 comments

GitHub / helxplatform/dug issues and pull requests