Ecosyste.ms: Issues

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GitHub / helske/seqHMM issues and pull requests

#68 - Error: number of labels must equal number of states in the alphabet

Issue - State: closed - Opened by loxavia almost 2 years ago - 4 comments

#67 - EM algorithm failed

Issue - State: closed - Opened by robertladwig about 2 years ago - 1 comment

#66 - Runtime Estimation

Issue - State: closed - Opened by mmervecerit over 2 years ago - 1 comment

#65 - Absorbing state broken in `build_mm()` (seqhmm 1.2.1-1)

Issue - State: closed - Opened by ninohardt over 2 years ago - 1 comment

#64 - Error in if (em.con$reltol < resEM$change) { : argument is of length zero

Issue - State: closed - Opened by Demi-wlw over 2 years ago - 5 comments

#63 - Extracting combinations of emitted states

Issue - State: closed - Opened by kyrantgs over 2 years ago - 4 comments

#62 - Maximum number of colours in cpal/colorpalette

Issue - State: closed - Opened by kyrantgs over 2 years ago - 4 comments

#61 - standard errors for HMM parameters

Issue - State: open - Opened by tbeason almost 3 years ago - 3 comments

#60 - Forward probability of MHMM vs HMM

Issue - State: closed - Opened by faezehMovahedi almost 3 years ago - 1 comment

#59 - Parallel computation

Issue - State: closed - Opened by faezehMovahedi almost 3 years ago - 2 comments

#58 - hidden_paths does not respect sequence length

Issue - State: closed - Opened by tbeason almost 3 years ago - 4 comments

#57 - Building a model with different sequence lengths

Issue - State: closed - Opened by aaubry89 over 3 years ago - 1 comment

#56 - 'System seems singular' and 'EM algorithm failed' for Mixture Markov Model

Issue - State: closed - Opened by dyisaev over 3 years ago - 2 comments

#55 - Parsing HMMER3 files

Issue - State: open - Opened by multimeric over 3 years ago - 2 comments

#54 - Apply to financial time series?

Issue - State: closed - Opened by mackancurtaincheeks over 3 years ago - 1 comment

#53 - seqdata should be a state sequence object

Issue - State: closed - Opened by loxavia about 4 years ago - 1 comment

#52 - HMM cluster assignments

Issue - State: closed - Opened by loxavia about 4 years ago - 2 comments

#50 - can this package support Multivariate Discrete HMM??

Issue - State: closed - Opened by wangjk321 about 4 years ago - 3 comments

#49 - [Help request] How to test the model?

Issue - State: closed - Opened by robdunne-uom over 4 years ago - 1 comment
Labels: enhancement

#48 - specifying emission matrix

Issue - State: closed - Opened by UlrikeNaumann over 4 years ago - 2 comments

#47 - how to find out optimal state numbers?

Issue - State: closed - Opened by mark-jy over 4 years ago - 2 comments

#46 - general question about subsequence extrac. with hmm

Issue - State: closed - Opened by mark-jy over 4 years ago

#45 - Fit mhmm with sequences of different lengths

Issue - State: closed - Opened by bowfan94 over 4 years ago

#44 - Transition Probabilities for each observation

Issue - State: closed - Opened by omerorsun almost 5 years ago - 9 comments

#43 - can you share data in csv format pls?

Issue - State: closed - Opened by Sandy4321 almost 5 years ago - 3 comments

#42 - Have you tried depmixS4 in R that takes care of external variables also ?

Issue - State: closed - Opened by ArpitSisodia almost 5 years ago - 1 comment

#40 - How to compare MHMMs with different number of parameters?

Issue - State: closed - Opened by vrodriguezf about 5 years ago - 3 comments

#38 - Feature request: allow prior state assignment probabilities from covariates

Issue - State: closed - Opened by jamesross2 over 5 years ago - 2 comments

#37 - Get likelihood of test observation of model fitted with train observation

Issue - State: closed - Opened by alexx600 almost 6 years ago - 2 comments

#36 - Arrow size option

Pull Request - State: closed - Opened by clayton-aldern almost 6 years ago - 3 comments

#34 - Check cpal attribute at the beginning of plotting

Issue - State: closed - Opened by helske almost 6 years ago - 1 comment

#32 - Underlying algorithm (math derivation) or paper reference for build_mmm?

Issue - State: closed - Opened by ghost over 6 years ago - 1 comment

#30 - Seed-dependent model fitting success for LCM

Issue - State: closed - Opened by steipatr over 6 years ago - 2 comments

#28 - ssplot comes out black

Issue - State: closed - Opened by liatmarc almost 7 years ago - 2 comments

#27 - Obtaining the observations within each cluster for MHMM

Issue - State: closed - Opened by NazaninEs almost 7 years ago - 2 comments

#26 - Mistake in the documentation - code example

Issue - State: closed - Opened by BenHeadikt about 7 years ago - 1 comment

#25 - No summary for latent class model?

Issue - State: closed - Opened by helske about 7 years ago - 1 comment

#24 - Fit MHMM with Clusters of different rows

Issue - State: closed - Opened by xlko over 7 years ago - 1 comment

#23 - Error in gridPLT() : Figure region too small and/or viewport too large

Issue - State: open - Opened by MarcAragones over 7 years ago - 8 comments

#22 - Error in build_hmm

Issue - State: closed - Opened by gunjanthesystem almost 8 years ago - 3 comments

#21 - ssplot creates two windows

Issue - State: open - Opened by jcanner almost 8 years ago - 2 comments

#20 - In ssp and ssplot: tlim accounted for only after sorting

Issue - State: closed - Opened by satuhelske almost 8 years ago - 1 comment

#19 - Problem installing the package

Issue - State: closed - Opened by rajeshbawa over 8 years ago - 2 comments

#18 - ltext param in multichannel HMM plots?

Issue - State: closed - Opened by vrodriguezf over 8 years ago - 1 comment

#17 - One channel full of NA's results in a seqfault

Issue - State: closed - Opened by vrodriguezf over 8 years ago - 5 comments

#16 - Computing sequence (log)-likelihood

Issue - State: closed - Opened by vrodriguezf over 8 years ago - 2 comments

#15 - Problems with BIC function

Issue - State: closed - Opened by vrodriguezf over 8 years ago - 4 comments

#14 - In ssp, the hidden.states.label argument does not work

Issue - State: closed - Opened by satuhelske over 8 years ago - 1 comment

#13 - The title argument does not work in mssplot

Issue - State: closed - Opened by satuhelske over 8 years ago - 1 comment

#12 - Error in simulate_hmm when simulating a single sequences

Issue - State: closed - Opened by satuhelske over 8 years ago

#11 - fit_model error for markov model with many states

Issue - State: closed - Opened by mikael10j over 8 years ago - 8 comments

#10 - plot function

Issue - State: closed - Opened by sapphire75710 almost 9 years ago - 3 comments

#9 - Use arma::inv instead of arma::inv_sympd

Issue - State: closed - Opened by helske about 9 years ago

#8 - not able to install the package

Issue - State: closed - Opened by sapphire75710 about 9 years ago - 5 comments

#6 - Analytical hessian for all parameters?

Issue - State: closed - Opened by helske over 9 years ago - 1 comment

#5 - vcov method for mhmm objects

Issue - State: closed - Opened by helske over 9 years ago

#4 - fit_mhmm: Improve warnings

Issue - State: closed - Opened by satuhelske over 9 years ago

#3 - ssp: recycle vectors

Issue - State: closed - Opened by satuhelske over 9 years ago - 1 comment

#1 - Problems with single state MHMM

Issue - State: closed - Opened by helske over 9 years ago - 1 comment