Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / helenalc/muscat issues and pull requests

#41 - Added utility function to flatten the pseudobulk object

Pull Request - State: closed - Opened by plger about 4 years ago

#40 - Error with aggregateData

Issue - State: closed - Opened by SimoneTiberi about 4 years ago - 4 comments

#39 - When we run mmDS with the method of nbimon

Issue - State: open - Opened by yuyingxie about 4 years ago - 1 comment

#38 - running mmDS with method = "nbinom"

Issue - State: closed - Opened by yuyingxie about 4 years ago - 7 comments

#37 - Using method N

Issue - State: closed - Opened by yuyingxie about 4 years ago

#36 - Running sce

Issue - State: closed - Opened by yuyingxie about 4 years ago - 3 comments

#35 - Question: How does aggregateData() and AverageExpression() differ from each other?

Issue - State: closed - Opened by biobug16 about 4 years ago - 2 comments

#34 - Suggestion for how to approach time the experimental variable with muscat?

Issue - State: closed - Opened by dpcook about 4 years ago - 5 comments

#33 - is there an R3.6 version for muscat?

Issue - State: closed - Opened by crazyhottommy about 4 years ago - 2 comments

#32 - Consider adding `verbose` option to `aggregateData`

Issue - State: closed - Opened by wmacnair over 4 years ago - 1 comment

#31 - Compute cluster markers gives Matrix subsetting error

Issue - State: closed - Opened by carlosf79 over 4 years ago - 8 comments

#30 - error when loading the package

Issue - State: closed - Opened by lixin4306ren over 4 years ago - 6 comments

#29 - ERROR: Between-method concordance Prep. data

Issue - State: closed - Opened by priyamnarain over 4 years ago - 6 comments

#28 - pbMDS plot error

Issue - State: closed - Opened by priyamnarain over 4 years ago - 2 comments

#27 - Requirement on R version for installation

Issue - State: closed - Opened by drychkov over 4 years ago - 1 comment

#26 - Error with tutorial and sctransform

Issue - State: closed - Opened by domi84 over 4 years ago - 3 comments

#25 - pbDS group_id NULL

Issue - State: closed - Opened by cnk113 over 4 years ago - 10 comments

#24 - mmDS error: gradient function must return a numeric vector of length 4

Issue - State: open - Opened by owenwilkins over 4 years ago - 9 comments

#23 - questions regarding setting up contrasts, # DGE genes

Issue - State: closed - Opened by kmh005 over 4 years ago - 1 comment

#22 - Raw or normalized counts for pseudobulk?

Issue - State: closed - Opened by tkapello over 4 years ago - 3 comments

#21 - Fix sim

Pull Request - State: closed - Opened by ansonrel over 4 years ago

#20 - calcExprFreqs returns NA if single sample_id not present in cluster

Issue - State: closed - Opened by dpcook over 4 years ago - 2 comments

#19 - Applying muscat's DS analysis on CyTOF data

Issue - State: closed - Opened by mdmanurung over 4 years ago - 2 comments

#18 - Fix simData

Pull Request - State: closed - Opened by ansonrel over 4 years ago

#17 - add hierarchical clusters simulation option

Pull Request - State: closed - Opened by ansonrel almost 5 years ago

#16 - Vignettes for simulating data

Issue - State: closed - Opened by klanita almost 5 years ago - 2 comments

#15 - Error in `simData`: attempt to extract more than one element

Issue - State: closed - Opened by milanmlft almost 5 years ago - 1 comment

#14 - No de genes with pseudobulk approach

Issue - State: closed - Opened by bio-la almost 5 years ago - 5 comments

#13 - logGC

Issue - State: closed - Opened by BingbingYuan almost 5 years ago - 1 comment

#12 - paired samples

Issue - State: closed - Opened by BingbingYuan about 5 years ago - 3 comments

#11 - Better home for the DE analysis pipeline

Issue - State: closed - Opened by LTLA about 5 years ago - 6 comments

#10 - Typofix

Pull Request - State: closed - Opened by federicomarini about 5 years ago

#9 - accept sce with no cells in some samples

Pull Request - State: closed - Opened by lpantano about 5 years ago - 6 comments

#8 - Error: Failed to install 'muscat' from GitHub

Issue - State: closed - Opened by erikadudki about 5 years ago - 3 comments

#7 - fixed issue with scater computeLibraryFactors

Pull Request - State: closed - Opened by markziemann about 5 years ago - 2 comments

#6 - Installation error

Issue - State: closed - Opened by MaxKman over 5 years ago - 2 comments

#5 - `runDS` not found

Issue - State: closed - Opened by lpantano over 5 years ago - 3 comments

#3 - added sctransform-based implementation; code still crashes on some genes

Pull Request - State: closed - Opened by HelenaLC over 5 years ago

#1 - get names on results returned from run_edgeR()

Pull Request - State: closed - Opened by markrobinsonuzh almost 6 years ago