hdmf-dev/hdmf issues and pull requests

#423 - Add support for other `quantity` values in schema

Issue - State: open - Opened by rly about 4 years ago - 1 comment
Labels: category: bug, priority: low

#423 - Add support for other `quantity` values in schema

Issue - State: open - Opened by rly about 4 years ago - 1 comment
Labels: category: bug, priority: low

#389 - Add warning/error if extension cannot be loaded from namespace alone

Issue - State: closed - Opened by rly over 4 years ago - 1 comment
Labels: category: bug

#389 - Add warning/error if extension cannot be loaded from namespace alone

Issue - State: closed - Opened by rly over 4 years ago - 1 comment
Labels: category: bug

#368 - Refactor convert_dtype

Issue - State: open - Opened by ajtritt over 4 years ago
Labels: category: enhancement, priority: low

#367 - allow for optional path and mode in HDF5IO

Pull Request - State: closed - Opened by bendichter over 4 years ago - 3 comments

#366 - HDF5IO should be able to take only File object

Issue - State: closed - Opened by bendichter over 4 years ago - 1 comment
Labels: category: enhancement

#358 - Add value validation

Issue - State: closed - Opened by ajtritt over 4 years ago - 3 comments
Labels: category: enhancement

#341 - Don't invent object IDs if they are missing

Issue - State: closed - Opened by t-b over 4 years ago - 6 comments
Labels: category: bug

#341 - Don't invent object IDs if they are missing

Issue - State: closed - Opened by t-b over 4 years ago - 6 comments
Labels: category: bug

#339 - Add native support for storing data from ontologies

Issue - State: closed - Opened by ajtritt over 4 years ago - 1 comment
Labels: category: enhancement

#339 - Add native support for storing data from ontologies

Issue - State: closed - Opened by ajtritt over 4 years ago - 1 comment
Labels: category: enhancement

#338 - Add the ability to share HDMF data via JSON

Issue - State: open - Opened by ajtritt over 4 years ago
Labels: category: proposal

#338 - Add the ability to share HDMF data via JSON

Issue - State: open - Opened by ajtritt over 4 years ago
Labels: category: proposal

#328 - Add foreign fields

Pull Request - State: closed - Opened by ajtritt over 4 years ago - 1 comment

#327 - Add the ability to store and resolve foreign fields

Issue - State: open - Opened by ajtritt over 4 years ago - 4 comments
Labels: category: proposal

#321 - Pass parent properties to extended dataset/attribute

Pull Request - State: open - Opened by rly over 4 years ago - 1 comment

#320 - Overridden dataset dtype and shape are not passed from parent to child

Issue - State: open - Opened by rly over 4 years ago - 2 comments
Labels: category: bug, priority: medium, topic: extension

#319 - Fix bug on gettype on empty array, add validator tests

Pull Request - State: open - Opened by rly over 4 years ago - 2 comments

#318 - Use the numpy dtype in get_type if the array is empty

Pull Request - State: open - Opened by oruebel over 4 years ago - 2 comments

#316 - Cannot extend group with subgroup/dataset that contains type definition

Issue - State: closed - Opened by rly over 4 years ago - 3 comments
Labels: category: bug

#316 - Cannot extend group with subgroup/dataset that contains type definition

Issue - State: closed - Opened by rly over 4 years ago - 3 comments
Labels: category: bug

#315 - unable to read -> (modify) -> write due to container_source

Issue - State: closed - Opened by NileGraddis over 4 years ago - 2 comments
Labels: category: bug

#315 - unable to read -> (modify) -> write due to container_source

Issue - State: closed - Opened by NileGraddis over 4 years ago - 2 comments
Labels: category: bug

#287 - GroupBuilder should allow access to attribute references

Issue - State: open - Opened by t-b almost 5 years ago - 4 comments
Labels: category: bug, priority: low

#287 - GroupBuilder should allow access to attribute references

Issue - State: open - Opened by t-b almost 5 years ago - 4 comments
Labels: category: bug, priority: low

#285 - dtype argument breaks DataChunkIterator

Issue - State: closed - Opened by luiztauffer almost 5 years ago - 2 comments
Labels: category: bug

#285 - dtype argument breaks DataChunkIterator

Issue - State: closed - Opened by luiztauffer almost 5 years ago - 2 comments
Labels: category: bug

#283 - Add tests for #279 (draft)

Pull Request - State: open - Opened by rly almost 5 years ago

#259 - spec should not allow default_value=None

Issue - State: open - Opened by bendichter almost 5 years ago - 3 comments
Labels: category: bug, priority: low

#259 - spec should not allow default_value=None

Issue - State: open - Opened by bendichter almost 5 years ago - 3 comments
Labels: category: bug, priority: low

#225 - run namespace validator

Pull Request - State: closed - Opened by bendichter almost 5 years ago - 4 comments

#223 - Schema validator

Pull Request - State: closed - Opened by bendichter almost 5 years ago - 4 comments

#210 - Do not allow write with a `DynamicTableRegion` index that is out of bounds

Issue - State: open - Opened by rly about 5 years ago - 4 comments
Labels: category: bug, priority: low

#209 - On read, raise helpful error message if DynamicTableRegion index is out of bounds

Issue - State: closed - Opened by rly about 5 years ago - 1 comment
Labels: category: enhancement, priority: low

#199 - SpecLanguage allow namespace version on include

Issue - State: open - Opened by rly about 5 years ago - 1 comment
Labels: category: enhancement, priority: low

#192 - [WIP] Add dimension scales/coordinates

Pull Request - State: open - Opened by rly about 5 years ago - 2 comments

#183 - Add auto_compress=True option to HDF5IO.write()

Issue - State: closed - Opened by yarikoptic about 5 years ago - 4 comments
Labels: category: enhancement, priority: low

#181 - Document AbstractContainer.fields in HDMF and PyNWB

Issue - State: closed - Opened by oruebel about 5 years ago - 1 comment
Labels: category: enhancement, topic: docs, priority: low

#180 - get_class fails on extension of existing hierarchy

Issue - State: closed - Opened by oruebel about 5 years ago - 2 comments
Labels: category: bug

#178 - Allow overwrite of constructor arguments to return None

Issue - State: open - Opened by oruebel about 5 years ago - 2 comments
Labels: category: bug, category: enhancement, priority: low

#169 - DynamicTableSpec convenience class

Issue - State: closed - Opened by oruebel about 5 years ago - 1 comment
Labels: category: enhancement

#136 - Refactor DataChunkIterator to not read first chunk on init

Issue - State: closed - Opened by rly about 5 years ago - 1 comment
Labels: category: enhancement

#135 - Support HDF5 Virtual Datasets on Write

Issue - State: closed - Opened by oruebel about 5 years ago - 11 comments
Labels: category: enhancement, priority: low

#123 - Refactor docval shape validation

Issue - State: open - Opened by rly over 5 years ago - 3 comments
Labels: category: enhancement, priority: low, topic: docval

#108 - Add container deepcopy

Pull Request - State: open - Opened by rly over 5 years ago - 4 comments

#73 - nested type definitions

Issue - State: open - Opened by bendichter over 5 years ago - 1 comment
Labels: category: bug, priority: low

#65 - Overwriting file with object already in file creates broken link and failure to write

Issue - State: closed - Opened by rly over 5 years ago - 5 comments
Labels: category: bug

#50 - default_name unused

Issue - State: closed - Opened by rly over 5 years ago - 4 comments
Labels: category: bug

#45 - Provide more informative warnings if a link is broken

Issue - State: closed - Opened by rly over 5 years ago - 2 comments
Labels: category: enhancement, priority: low

#6 - Export extension specification YAML from structure of an HDMF file

Issue - State: closed - Opened by ajtritt over 5 years ago
Labels: category: enhancement

#2 - schema yaml validator

Issue - State: closed - Opened by bendichter almost 6 years ago - 2 comments
Labels: category: enhancement

GitHub / hdmf-dev/hdmf issues and pull requests