hdmf-dev/hdmf issues and pull requests

#999 - Update get_key to support multiple keys

Pull Request - State: closed - Opened by mavaylon1 about 1 year ago - 1 comment

#998 - improve html display for tables

Pull Request - State: closed - Opened by bendichter about 1 year ago - 5 comments

#997 - Constrained chunk shape estimation

Pull Request - State: open - Opened by CodyCBakerPhD about 1 year ago - 1 comment

#996 - propose alternative chunk shape algorithm

Pull Request - State: open - Opened by bendichter about 1 year ago - 3 comments

#995 - [Feature]: Define partial chunk shape for GenericDataChunkIterator

Issue - State: open - Opened by bendichter about 1 year ago - 4 comments
Labels: category: enhancement, priority: medium

#994 - Add type annotations

Issue - State: open - Opened by jwodder about 1 year ago - 1 comment
Labels: category: proposal, priority: medium

#993 - remove 1 MB chunk recommendation

Pull Request - State: closed - Opened by bendichter about 1 year ago - 1 comment

#992 - Use faster mamba solver in github actions

Pull Request - State: closed - Opened by rly about 1 year ago - 2 comments

#991 - _gather_columns agnostic search

Pull Request - State: closed - Opened by mavaylon1 about 1 year ago - 12 comments

#990 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment

#989 - Prepare for release of HDMF 3.11.0

Pull Request - State: closed - Opened by rly about 1 year ago - 1 comment

#988 - Use simpler tox.ini, add testing for Python 3.12, and other small updates

Pull Request - State: closed - Opened by rly about 1 year ago - 1 comment

#987 - Disable python requirements files checking in dependabot

Pull Request - State: closed - Opened by rly about 1 year ago - 1 comment

#986 - Bump zarr from 2.12.0 to 2.16.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: compatability: dependencies, python

#985 - Bump jsonschema from 3.2.0 to 4.19.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: compatability: dependencies, python

#984 - Bump pydantic from 1.10.13 to 2.4.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 4 comments
Labels: compatability: dependencies, python

#983 - Bump black from 23.9.1 to 23.10.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: compatability: dependencies, python

#982 - Bump actions/add-to-project from 0.4.0 to 0.5.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: compatability: dependencies, github_actions

#981 - Bump tibdex/github-app-token from 1.7.0 to 2.1.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: compatability: dependencies, github_actions

#980 - Bump pytest from 7.4.2 to 7.4.3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: compatability: dependencies, python

#979 - Bump actions/checkout from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: compatability: dependencies, github_actions

#978 - Bump styfle/cancel-workflow-action from 0.11.0 to 0.12.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: compatability: dependencies, github_actions

#977 - Set up dependabot to check for package updates

Pull Request - State: closed - Opened by rly about 1 year ago - 1 comment

#976 - Add/mailmap

Pull Request - State: closed - Opened by oruebel about 1 year ago - 3 comments

#975 - Update README.rst

Pull Request - State: closed - Opened by rly about 1 year ago - 1 comment

#974 - Link on PyPI readme is broken

Issue - State: closed - Opened by hed-maintainers about 1 year ago - 1 comment

#973 - [Bug]: Autogen table class does not set column name attribute, breaking roundtrip

Issue - State: closed - Opened by rly about 1 year ago - 1 comment

#972 - [Bug]: Autogen classes do not set required_name in fields

Issue - State: closed - Opened by rly about 1 year ago - 1 comment

#971 - Add `target_tables` argument to `DynamicTable.init`

Pull Request - State: closed - Opened by rly about 1 year ago - 2 comments

#970 - [Bug]: Auto-generating subclass of subclass of DynamicTable with DTR fails

Issue - State: closed - Opened by rly about 1 year ago
Labels: category: bug, priority: medium, topic: extension

#969 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment

#968 - HERD Updates

Pull Request - State: closed - Opened by mavaylon1 about 1 year ago - 6 comments

#967 - TermSet minor test updates, _repr_html_, name field

Pull Request - State: closed - Opened by mavaylon1 about 1 year ago - 7 comments

#966 - [Feature]: HERD/TermSet Expansion Tracker

Issue - State: closed - Opened by mavaylon1 about 1 year ago - 1 comment
Labels: category: proposal, priority: medium

#965 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago

#964 - Update HERD.get_key to replace ValueError with return values

Pull Request - State: closed - Opened by oruebel about 1 year ago - 5 comments

#963 - [Bug]: Convert_dtype on a list/tuple of many items is not performant

Issue - State: open - Opened by rly about 1 year ago
Labels: category: enhancement, priority: low

#962 - [Bug]: DTR validation assumes table is set and raises warning aggressively

Issue - State: open - Opened by rly about 1 year ago - 5 comments
Labels: category: bug, priority: medium

#961 - [Feature]: Reusing Keys and Entities should be automatic

Issue - State: closed - Opened by mavaylon1 about 1 year ago - 1 comment
Labels: category: enhancement, priority: low

#960 - [Feature]: Update deploy release action to use OpenID Connect

Issue - State: closed - Opened by rly about 1 year ago - 1 comment

#959 - [Bug]: Auto-generating MultiContainerInterface subclasses

Issue - State: closed - Opened by mavaylon1 about 1 year ago - 2 comments
Labels: category: bug, priority: medium

#958 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 2 comments

#957 - Fix release workflow and prepare 3.10.0 release

Pull Request - State: closed - Opened by rly about 1 year ago - 1 comment

#956 - [Bug]: Wrong Version when creating a release

Issue - State: closed - Opened by mavaylon1 about 1 year ago - 1 comment
Labels: category: bug, priority: critical

#955 - Release 3.9.1

Pull Request - State: closed - Opened by mavaylon1 about 1 year ago - 3 comments

#954 - [Feature]: TermSetWrapper with DataIO

Issue - State: closed - Opened by mavaylon1 about 1 year ago - 4 comments
Labels: category: enhancement, priority: wontfix

#953 - Fix DynamicTable with all DataChunkIterator columns bug

Pull Request - State: closed - Opened by oruebel about 1 year ago - 2 comments

#952 - [Bug]: Data of VectorData wrapped in DataChunkIterator produces roundtrip error on read

Issue - State: closed - Opened by CodyCBakerPhD over 1 year ago - 4 comments
Labels: category: bug, priority: high

#951 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment

#950 - TermSetWrapper and write support

Pull Request - State: closed - Opened by mavaylon1 about 1 year ago - 6 comments

#949 - [Feature]: TermSet Cache/Links

Issue - State: open - Opened by mavaylon1 about 1 year ago
Labels: category: enhancement, priority: low

#948 - [Bug]: Inheriting from subclass of DynamicTable triggers attribute error

Issue - State: closed - Opened by dysprague over 1 year ago - 24 comments

#947 - Release 3.9.0

Pull Request - State: closed - Opened by mavaylon1 over 1 year ago - 2 comments

#946 - add RemFile as a supported format

Pull Request - State: closed - Opened by bendichter over 1 year ago - 1 comment

#945 - [Feature]: preview of docs changes in PRs

Issue - State: closed - Opened by bendichter over 1 year ago - 1 comment

#944 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#943 - Fix termset reqs, rename deps tag

Pull Request - State: closed - Opened by rly over 1 year ago - 1 comment

#942 - [Bug]: Refactor some changes regarding TermSet

Issue - State: closed - Opened by rly over 1 year ago

#941 - Update HERD for user defined zip file

Pull Request - State: closed - Opened by mavaylon1 over 1 year ago - 3 comments

#940 - [Bug]: Dev branches import failure from daily CI

Issue - State: closed - Opened by CodyCBakerPhD over 1 year ago - 3 comments

#939 - improve links to DynamicTable API docs

Pull Request - State: closed - Opened by bendichter over 1 year ago - 3 comments

#938 - [Feature]: TermSet Restructure (Stage 5): Compound Data

Issue - State: closed - Opened by mavaylon1 over 1 year ago
Labels: category: enhancement, priority: low

#937 - [Bug]: Rename "latest" wheels

Issue - State: open - Opened by rly over 1 year ago - 1 comment
Labels: category: bug, priority: low

#936 - Update CHANGELOG.md for #925

Pull Request - State: closed - Opened by rly over 1 year ago - 2 comments

#935 - TermSet Update #1

Pull Request - State: closed - Opened by mavaylon1 over 1 year ago - 3 comments

#934 - set_data_io method and associated test

Pull Request - State: closed - Opened by bendichter over 1 year ago - 4 comments

#933 - HERD name change

Pull Request - State: closed - Opened by mavaylon1 over 1 year ago - 5 comments

#932 - [Feature]: Change ExternalResources to HERD

Issue - State: closed - Opened by mavaylon1 over 1 year ago
Labels: category: enhancement

#931 - [Documentation]: Integrate Github Codespace

Issue - State: open - Opened by mavaylon1 over 1 year ago
Labels: category: enhancement, priority: low

#930 - [Feature]: TermSet Restructure (Stage 4): Iterative Write

Issue - State: closed - Opened by mavaylon1 over 1 year ago - 2 comments
Labels: category: enhancement, priority: wontfix

#929 - [Feature]: TermSet Restructure Part 3

Issue - State: closed - Opened by mavaylon1 over 1 year ago - 1 comment
Labels: category: enhancement, priority: medium

#928 - [Feature]: TermSet Restructure (Stage 2 & 3): Wrapper class and "write" compatibility

Issue - State: closed - Opened by mavaylon1 over 1 year ago
Labels: category: enhancement, priority: high

#927 - [Feature]: TermSet Restructure (Stage 1): add from root_container

Issue - State: closed - Opened by mavaylon1 over 1 year ago - 1 comment
Labels: category: enhancement, category: proposal, priority: high

#926 - rmv warning from load_namespaces

Pull Request - State: closed - Opened by bendichter over 1 year ago - 2 comments

#925 - change chunk default size to 10MB

Pull Request - State: closed - Opened by bendichter over 1 year ago - 7 comments

#924 - Add base methods for iterator serialization

Pull Request - State: closed - Opened by CodyCBakerPhD over 1 year ago - 2 comments

#923 - DynamicEnums and Schemasheets integration

Pull Request - State: closed - Opened by mavaylon1 over 1 year ago - 4 comments

#922 - [Feature]: Make creating extensions of DynamicTable easier

Issue - State: open - Opened by oruebel over 1 year ago - 3 comments
Labels: help wanted: good first issue, category: proposal, priority: low, topic: extension

#921 - [Feature]: Allow initializing DynamicTable with req/opt cols more directly

Issue - State: open - Opened by rly over 1 year ago
Labels: category: enhancement, priority: medium

#920 - [Feature]: Read linked files with only warnings rather than errors

Issue - State: open - Opened by oruebel over 1 year ago
Labels: category: enhancement, help wanted: deep dive, priority: medium

#919 - Fix/read bad icephys table

Pull Request - State: closed - Opened by oruebel over 1 year ago - 2 comments

#918 - [Bug]: Reading AlignedDynamicTable from disk causes hdf5 error

Issue - State: closed - Opened by rly over 1 year ago - 4 comments
Labels: category: bug, priority: medium

#917 - Refactor DTR warning

Pull Request - State: closed - Opened by rly over 1 year ago - 2 comments

#916 - Fix pytest UnraisableExceptionWarning

Pull Request - State: closed - Opened by rly over 1 year ago - 2 comments

#915 - Fix error with setting read_io to same obj twice

Pull Request - State: closed - Opened by rly over 1 year ago - 1 comment

#914 - [Bug]: Calling io.read() more than once results in error

Issue - State: closed - Opened by rly over 1 year ago

#913 - [Bug]: Container.__read_io not found if ContainerSubclass.init raises error

Issue - State: closed - Opened by rly over 1 year ago - 4 comments
Labels: category: bug, priority: low

#912 - Release 3.8.0

Pull Request - State: closed - Opened by mavaylon1 over 1 year ago - 1 comment

#911 - [Feature]: Change the external resources file name

Issue - State: closed - Opened by rly over 1 year ago - 9 comments

#910 - Add ER write capability to IO backend

Pull Request - State: closed - Opened by mavaylon1 over 1 year ago - 1 comment

#909 - TermSet get attribute replacement

Pull Request - State: closed - Opened by mavaylon1 over 1 year ago - 1 comment

#908 - [Feature]: Allow classes to define their own _generate_html_repr

Issue - State: open - Opened by bendichter over 1 year ago
Labels: category: enhancement, priority: medium

#907 - assign a filler to version if it cannot be imported

Pull Request - State: closed - Opened by bendichter over 1 year ago - 2 comments
Labels: priority: critical

#906 - Update bug_report.yml

Pull Request - State: closed - Opened by bendichter over 1 year ago - 1 comment

#905 - [Bug]: Import error in dev mode

Issue - State: closed - Opened by bendichter over 1 year ago - 2 comments

#904 - [Feature]: Add tests for Python 3.12

Issue - State: closed - Opened by rly over 1 year ago - 1 comment
Labels: category: enhancement, priority: low

#903 - Fix GenericDataChunkIteratorTests.test_abstract_assertions for Python 3.12

Pull Request - State: closed - Opened by musicinmybrain over 1 year ago - 3 comments

#902 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#901 - Release 3.7.0

Pull Request - State: closed - Opened by mavaylon1 over 1 year ago - 1 comment

#900 - Update software_process.rst

Pull Request - State: closed - Opened by mavaylon1 over 1 year ago - 1 comment

GitHub / hdmf-dev/hdmf issues and pull requests