Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / hdmf-dev/hdmf issues and pull requests

#1198 - Coverage to 90%

Pull Request - State: open - Opened by mavaylon1 about 1 month ago - 1 comment

#1197 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: open - Opened by pre-commit-ci[bot] about 2 months ago - 1 comment

#1196 - Bonsai GUI export to NWB

Issue - State: closed - Opened by justidy1 about 2 months ago - 3 comments

#1195 - Release 3.14.5

Pull Request - State: closed - Opened by mavaylon1 about 2 months ago - 1 comment

#1194 - Remove mamba key from GH Actions

Pull Request - State: closed - Opened by rly about 2 months ago - 3 comments

#1193 - Allow Codec for compression for use with LINDI

Pull Request - State: open - Opened by magland 2 months ago - 1 comment

#1192 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 3 months ago - 1 comment

#1191 - [Bug]: warning for incorrect data shape for dataset of references

Issue - State: open - Opened by stephprince 3 months ago
Labels: category: bug, priority: medium

#1190 - [Bug]: Shape should be validated on write

Issue - State: open - Opened by rly 3 months ago
Labels: category: bug, priority: medium

#1189 - Fix handling of read h5py string datasets

Pull Request - State: closed - Opened by rly 3 months ago - 2 comments

#1188 - make untyped dataset of references expandable

Pull Request - State: closed - Opened by stephprince 3 months ago - 2 comments

#1187 - "Copy" via "export" is "larger" (10x fold in this silly example) than original!

Issue - State: closed - Opened by yarikoptic 3 months ago - 5 comments
Labels: category: bug, priority: medium

#1186 - [Bug]: Regression in fresh 3.14.4

Issue - State: closed - Opened by yarikoptic 3 months ago - 1 comment
Labels: category: bug, priority: medium

#1185 - Fix scalar dataset with compound dtype for export

Pull Request - State: closed - Opened by stephprince 3 months ago - 2 comments

#1184 - Release 3.14.4 (Again)

Pull Request - State: closed - Opened by mavaylon1 3 months ago - 1 comment

#1183 - Fix resolution of extension classes that have references

Pull Request - State: closed - Opened by rly 3 months ago - 1 comment

#1182 - [Bug]: Cannot create classes from cached extensions with references to types defined in the extension

Issue - State: closed - Opened by rly 3 months ago
Labels: category: bug, priority: medium

#1181 - [Bug]: untyped dataset of references cannot be set as expandable

Issue - State: closed - Opened by stephprince 3 months ago
Labels: category: bug, priority: medium, topic: PyNWB

#1180 - VectorData Refactor Expandable (#1158)

Pull Request - State: open - Opened by mavaylon1 3 months ago - 2 comments

#1179 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 3 months ago - 1 comment

#1178 - Release 3.14.4

Pull Request - State: closed - Opened by mavaylon1 3 months ago - 2 comments

#1177 - [Feature]: Update tests to use numpy 2.0

Issue - State: open - Opened by mavaylon1 3 months ago
Labels: category: enhancement, priority: medium

#1176 - Write scalar datasets with compound data type

Pull Request - State: closed - Opened by stephprince 3 months ago - 2 comments

#1175 - Modification to Fix conversion of Zarr string dataset to HDF5

Pull Request - State: open - Opened by rly 3 months ago - 1 comment

#1174 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 3 months ago - 1 comment

#1173 - Add support to write multidimensional string arrays

Pull Request - State: closed - Opened by stephprince 3 months ago - 2 comments

#1171 - Fix conversion of Zarr string dataset to HDF5

Pull Request - State: open - Opened by oruebel 3 months ago - 2 comments

#1170 - [Feature]: Add support for overriding backend configuration in HDF5 datasets

Issue - State: closed - Opened by pauladkisson 3 months ago - 3 comments
Labels: category: enhancement, priority: medium

#1169 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 3 months ago - 1 comment

#1168 - Check DynamicTableRegion data is in bounds

Pull Request - State: open - Opened by rly 4 months ago - 1 comment

#1167 - Allow override of constructor args and object attrs to return None

Pull Request - State: open - Opened by rly 4 months ago - 4 comments

#1166 - Adjust stacklevel to point to user code

Pull Request - State: closed - Opened by rly 4 months ago - 1 comment

#1165 - Improve "already exists" error message

Pull Request - State: closed - Opened by rly 4 months ago - 1 comment

#1164 - [Bug]: `stacklevel=2` makes all warnings look like they're coming from docval

Issue - State: closed - Opened by sneakers-the-rat 4 months ago - 2 comments
Labels: category: enhancement, priority: low

#1163 - [Bug]: Dimension Labels and Expandable Datasets Edge Cases

Issue - State: open - Opened by mavaylon1 4 months ago - 1 comment
Labels: category: bug, category: enhancement

#1162 - Allow Codec for compression for use with LINDI

Pull Request - State: closed - Opened by magland 4 months ago - 1 comment
Labels: category: proposal

#1161 - [Feature]: Add dictionary methods to MultiContainerInterface

Issue - State: open - Opened by rly 4 months ago - 1 comment
Labels: category: enhancement, priority: low

#1160 - [Feature]: HERD Roadmap

Issue - State: open - Opened by mavaylon1 4 months ago - 1 comment

#1159 - [Bug]: Defining custom class without docval prevents read

Issue - State: open - Opened by rly 4 months ago
Labels: category: bug, priority: low

#1158 - VectorData Refactor Expandable

Pull Request - State: closed - Opened by mavaylon1 4 months ago - 5 comments

#1157 - Minimum Support for Appending References in Hdmf-Zarr

Pull Request - State: closed - Opened by mavaylon1 4 months ago - 2 comments

#1156 - Release 3.14.3

Pull Request - State: closed - Opened by mavaylon1 4 months ago - 1 comment

#1155 - Release 3.14.3

Pull Request - State: closed - Opened by mavaylon1 4 months ago - 1 comment

#1154 - Add doc to H5DataIO.dataset setter

Pull Request - State: closed - Opened by rly 4 months ago - 1 comment

#1153 - [Feature]: Expandable datasets (HDF5)

Issue - State: open - Opened by mavaylon1 4 months ago - 2 comments

#1152 - [perf] Increase test performance by 274% with this one weird trick...

Pull Request - State: open - Opened by sneakers-the-rat 4 months ago - 6 comments

#1151 - TermSet Schema

Pull Request - State: open - Opened by mavaylon1 4 months ago - 2 comments

#1150 - [Feature]: Build a more robust set of test tools

Issue - State: open - Opened by mavaylon1 4 months ago - 2 comments
Labels: category: enhancement, priority: medium

#1148 - [Bug]: Non-DCI H5DataIO does not passthrough `maxshape` property which crashes pynwb Timeseries

Issue - State: closed - Opened by cboulay 5 months ago - 1 comment
Labels: category: bug, priority: medium

#1147 - Revert 1140 optional scipy

Pull Request - State: open - Opened by mavaylon1 5 months ago - 1 comment

#1146 - Move scipy to optional requirements (#1140)

Pull Request - State: closed - Opened by mavaylon1 5 months ago

#1145 - Release 3.14.2

Pull Request - State: closed - Opened by mavaylon1 5 months ago - 3 comments

#1144 - Bump actions/add-to-project from 1.0.1 to 1.0.2

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: compatability: dependencies, github_actions

#1143 - Allow "value" in DatasetSpec

Pull Request - State: closed - Opened by rly 5 months ago - 1 comment

#1142 - Regression: UserWarning: Unexpected keys ['value'] in spec ...

Issue - State: closed - Opened by yarikoptic 5 months ago - 2 comments
Labels: category: bug

#1141 - Make Zarr optional for testing

Pull Request - State: closed - Opened by mavaylon1 5 months ago - 4 comments

#1140 - Move scipy to optional requirements

Pull Request - State: closed - Opened by rly 5 months ago - 1 comment

#1139 - Add support for numpy 2, update all deps

Pull Request - State: closed - Opened by rly 5 months ago - 1 comment

#1138 - [Feature]: Remove zarr from core dependencies

Issue - State: closed - Opened by rly 5 months ago - 8 comments
Labels: category: enhancement, compatability: dependencies

#1137 - Cannot write multi-dimensional string arrays

Issue - State: closed - Opened by rly 5 months ago - 1 comment
Labels: category: bug, priority: medium

#1136 - Zarr append for datasets (non-reference)

Pull Request - State: closed - Opened by mavaylon1 5 months ago - 1 comment

#1135 - Append a Dataset of References

Pull Request - State: closed - Opened by mavaylon1 5 months ago - 6 comments

#1134 - Warn when unexpected keys in specs

Pull Request - State: closed - Opened by rly 5 months ago - 1 comment

#1133 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 5 months ago - 1 comment

#1132 - [Feature]: Add support for numpy 2.0

Issue - State: closed - Opened by bendichter 5 months ago - 4 comments
Labels: category: enhancement

#1131 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 5 months ago - 1 comment

#1130 - [Bug]: np.string_ issue on Windows CI

Issue - State: closed - Opened by CodyCBakerPhD 5 months ago - 1 comment
Labels: category: bug

#1129 - [Feature]: Replace docval with better strict type and shape validation system with type hints

Issue - State: open - Opened by rly 5 months ago - 4 comments
Labels: category: proposal

#1128 - Fix iterator increment

Pull Request - State: closed - Opened by CodyCBakerPhD 5 months ago - 2 comments

#1127 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 6 months ago - 1 comment

#1126 - Expanding support for Append

Pull Request - State: closed - Opened by mavaylon1 6 months ago

#1125 - [Bug]: Append does not work for Zarr Arrays (and DatasetofReferences)

Issue - State: closed - Opened by mavaylon1 6 months ago - 11 comments
Labels: category: bug, category: enhancement, priority: medium

#1124 - Release 3.14.1

Pull Request - State: closed - Opened by mavaylon1 6 months ago - 1 comment

#1123 - [Feature]: Add `load_namespaces` and `get_namespaces` to `HDMFIO`

Issue - State: open - Opened by rly 6 months ago - 2 comments
Labels: category: enhancement

#1122 - Fix issue with resolving attribute specs with same name

Pull Request - State: closed - Opened by rly 6 months ago - 1 comment

#1121 - [Bug]: Resolving spec inheritance fails when attribute has same name as existing attr on another object

Issue - State: closed - Opened by rly 6 months ago - 1 comment
Labels: category: bug, priority: medium, topic: extension

#1120 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 6 months ago - 1 comment

#1119 - Delete MANIFEST.in and exclude artifacts from sdist and wheel

Pull Request - State: closed - Opened by rly 6 months ago - 1 comment

#1118 - Release 3.14

Pull Request - State: closed - Opened by mavaylon1 6 months ago - 1 comment

#1117 - Config Typemap generalize

Pull Request - State: closed - Opened by mavaylon1 6 months ago - 2 comments

#1116 - Fix warning

Pull Request - State: closed - Opened by mavaylon1 6 months ago - 5 comments

#1115 - Update pyproject.toml to use only Numpy <2.0

Pull Request - State: closed - Opened by mavaylon1 6 months ago - 2 comments

#1114 - [Bug]: Test collection fails for three tests with pytest 8.2.0

Issue - State: open - Opened by penguinpee 6 months ago - 6 comments
Labels: category: bug, category: enhancement

#1113 - [Feature]: Running NeuroConv tests on dev branches

Issue - State: open - Opened by CodyCBakerPhD 7 months ago - 3 comments
Labels: category: enhancement, priority: medium

#1112 - Update run_pynwb_tests.yml

Pull Request - State: closed - Opened by mavaylon1 7 months ago - 1 comment

#1111 - [Bug]: NeuroConv dev tests - Last axis of data shapes is None

Issue - State: open - Opened by CodyCBakerPhD 7 months ago - 12 comments
Labels: category: bug, priority: medium

#1110 - Expose progress bar class control

Pull Request - State: closed - Opened by CodyCBakerPhD 7 months ago - 3 comments

#1109 - Bump tqdm from 4.41.0 to 4.66.3

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: compatability: dependencies, python

#1108 - [Feature]: Add an object path as a way to uniquely identify an object in the API

Issue - State: open - Opened by h-mayorquin 7 months ago - 8 comments
Labels: category: enhancement, priority: low, topic: PyNWB

#1107 - Update coverage call, don't install in editable mode in testing

Pull Request - State: closed - Opened by rly 7 months ago - 1 comment
Labels: category: enhancement, topic: testing

#1106 - [Bug]: Numpy 2.0

Issue - State: closed - Opened by mavaylon1 7 months ago
Labels: category: bug

#1105 - Ignore config cache warnings in sphinx

Pull Request - State: closed - Opened by stephprince 7 months ago - 1 comment

#1104 - Workflows to support python 3.9 and 3.8 with Mac OS 13

Pull Request - State: closed - Opened by mavaylon1 7 months ago - 1 comment

#1103 - speed up loading of namespaces: return shallow copy in build_const_args

Pull Request - State: closed - Opened by magland 7 months ago - 5 comments
Labels: category: enhancement, topic: performance

#1102 - speed up loading of namespaces: skip register type when already registered when loading namespace

Pull Request - State: closed - Opened by magland 7 months ago - 2 comments
Labels: category: enhancement, topic: performance

#1101 - [Bug]: Custom class generator does not account for fields refined from parent type

Issue - State: open - Opened by rly 7 months ago - 1 comment
Labels: category: bug, priority: low, topic: extension

#1100 - improve html representation of datasets

Pull Request - State: open - Opened by h-mayorquin 7 months ago - 12 comments
Labels: category: enhancement

#1099 - [Bug]: Compound dtype attributes are not supported

Issue - State: open - Opened by rly 7 months ago - 2 comments
Labels: category: bug