Ecosyste.ms: Issues
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GitHub / havakv/pycox issues and pull requests
#181 - Update package publishing
Pull Request -
State: closed - Opened by havakv 30 days ago
#180 - Update python version
Pull Request -
State: closed - Opened by havakv about 1 month ago
- 1 comment
#179 - [Installation] python setup.py egg_info did not run successfully
Issue -
State: open - Opened by Taha-Bahadori about 2 months ago
- 1 comment
#178 - Newton-Raphson optimization
Issue -
State: open - Opened by dionrlnd 2 months ago
#177 - what kind of model in pycox works for sequential patterns
Issue -
State: open - Opened by CFZhai 5 months ago
#176 - performance for ordinal categorical covariates
Issue -
State: open - Opened by AdenilsonJr23 6 months ago
#175 - Auto-encoder pycox implementation for 3D images instead of tabular data
Issue -
State: open - Opened by nickel-04 7 months ago
#174 - A model to add
Issue -
State: open - Opened by emenand 8 months ago
#173 - ValueError: cannot convert float NaN to integer
Issue -
State: open - Opened by Aniket99coder 11 months ago
- 1 comment
#172 - TypeError: forward() missing 1 required positional argument: 'events'
Issue -
State: open - Opened by KristofPusztai almost 1 year ago
#171 - _initialization of _internal failed
Issue -
State: open - Opened by afuentes09651 about 1 year ago
#170 - Update eval_surv.py for pandas 2.0
Pull Request -
State: closed - Opened by hminle about 1 year ago
- 5 comments
#169 - Softmax layer and residual connections in DeepHitSingle model
Issue -
State: open - Opened by Anivader about 1 year ago
- 1 comment
#168 - ValueError: cannot convert float NaN to integer
Issue -
State: open - Opened by Serendipity-Sylvia about 1 year ago
- 1 comment
#167 - AttributeError: 'DeepHitSingle' object has no attribute 'state_dict'
Issue -
State: open - Opened by zachfreitas over 1 year ago
- 1 comment
#166 - Some question about the result of deephit_competing_risks
Issue -
State: open - Opened by ymhyumenghan over 1 year ago
- 2 comments
#165 - Calculating Estimated Population Survival Curve
Issue -
State: open - Opened by puckybreg over 1 year ago
- 4 comments
#164 - Reproduction of the results in JMLR19 paper
Issue -
State: open - Opened by minxueric over 1 year ago
- 1 comment
#163 - about hazard value!
Issue -
State: open - Opened by alexxiecan over 1 year ago
- 2 comments
#162 - AttributeError: 'Series' object has no attribute 'is_monotonic'
Issue -
State: open - Opened by alexxiecan over 1 year ago
- 19 comments
#161 - METABRIC Covariates Subset
Issue -
State: open - Opened by sourcesync over 1 year ago
- 1 comment
#160 - Use is_monotonic_increasing to allow Pandas 2.0
Pull Request -
State: closed - Opened by matteo4diani over 1 year ago
- 1 comment
#159 - AssertionError: assert durations.shape[0] == surv.shape[1] == surv_idx.shape[0] == events.shape[0]
Issue -
State: open - Opened by nanhui2000 over 1 year ago
#158 - L1 and L2 penalty coxph
Issue -
State: open - Opened by Cesco16 over 1 year ago
- 1 comment
#157 - Issue in function cox_time.py
Issue -
State: open - Opened by RobbenJ over 1 year ago
- 1 comment
#156 - is_monotonic should be update to is_monotonic_increasing
Issue -
State: open - Opened by JIN-Li-stats over 1 year ago
- 1 comment
#155 - How to use dropout in eval_
Issue -
State: open - Opened by iuimaki almost 2 years ago
- 1 comment
#154 - NLL PMF loss with partial PMF output
Issue -
State: open - Opened by cirrostratus1 almost 2 years ago
#153 - PyCOX data leaking
Issue -
State: open - Opened by hellorp1990 almost 2 years ago
- 1 comment
#152 - Intuitions for padding model output columns?
Issue -
State: open - Opened by siyueyang almost 2 years ago
#151 - Model reset parameters
Issue -
State: open - Opened by hellorp1990 almost 2 years ago
#150 - Addressing issue #149 -> change `is not ` to `!=`
Pull Request -
State: open - Opened by pooya-mohammadi almost 2 years ago
#149 - ValueError: Need `time` to have same type as `self.durations`
Issue -
State: open - Opened by pooya-mohammadi almost 2 years ago
#148 - Is there any way around model.fit(x_train, y_train)?
Issue -
State: open - Opened by kyuchoi almost 2 years ago
#147 - what is the function of gamma here
Issue -
State: closed - Opened by linzhlalala almost 2 years ago
- 2 comments
#146 - cite this package
Issue -
State: open - Opened by skyee1 about 2 years ago
- 1 comment
#145 - Continuous-Time Models Loss Calculation
Issue -
State: open - Opened by up-tree about 2 years ago
- 1 comment
#144 - Using logcumsumexp in loss calculation
Issue -
State: open - Opened by avihu111 about 2 years ago
- 1 comment
#143 - fix: fixing the part3 of the nll loss parametrized with PMF
Pull Request -
State: closed - Opened by sergiogvz about 2 years ago
- 1 comment
#142 - Training Time and CPU Usage
Issue -
State: open - Opened by xiangtgao about 2 years ago
- 1 comment
#141 - [Errno 13] Permission denied: 'lr_finder_checkpoint_2022-8-10_18-30-49_CRHhmhwJPCEIOziQlZ2b.pt'
Issue -
State: open - Opened by kyuchoi about 2 years ago
#140 - Output the same for every input (survival curves)
Issue -
State: open - Opened by tomas-silveira about 2 years ago
- 3 comments
#139 - Add Zenodo or a relevant citation guidance to get cited for the important work you have done
Issue -
State: open - Opened by armaneshaghi about 2 years ago
- 1 comment
#138 - Leave one out
Issue -
State: closed - Opened by arBest about 2 years ago
- 2 comments
#137 - same survival probabilities from predict_surv_df
Issue -
State: open - Opened by mahootiha-maryam about 2 years ago
- 2 comments
#136 - make a net based on pretrained model
Issue -
State: open - Opened by mahootiha-maryam over 2 years ago
- 1 comment
#135 - Use clinical data in addition to image dataset for survival estimates
Issue -
State: open - Opened by mahootiha-maryam over 2 years ago
#134 - Transfer Learning - DeepHit with competing risk
Issue -
State: open - Opened by ygivenx over 2 years ago
- 2 comments
#133 - logistichazard and coxph basics
Issue -
State: open - Opened by mahootiha-maryam over 2 years ago
- 4 comments
#132 - Facing error for batch size that is greater than 1
Issue -
State: open - Opened by mahootiha-maryam over 2 years ago
- 1 comment
#131 - Use Unet as a net for feeding it to logistichazard
Issue -
State: open - Opened by mahootiha-maryam over 2 years ago
- 3 comments
#130 - Could not use GPU for pycox
Issue -
State: open - Opened by Jwenyi over 2 years ago
- 5 comments
#129 - Difference between `nll_logistic_hazard` and the one from Gensheimer (2018) ?
Issue -
State: closed - Opened by peterchristofferholm over 2 years ago
- 2 comments
#128 - Is it possible to apply saliency map or grad-cam with pycox?
Issue -
State: open - Opened by chingheng113 over 2 years ago
- 1 comment
#127 - Problem with the indexes and batch size when using fit_loader
Issue -
State: closed - Opened by CarlosHernandezP over 2 years ago
#126 - Applying SHAP to pycox models
Issue -
State: open - Opened by VanishingRasengan over 2 years ago
- 7 comments
Labels: enhancement
#125 - Experience in train/val/test partitions with survival data in real-world datasets
Issue -
State: open - Opened by paulamartingonzalez over 2 years ago
- 7 comments
#124 - no loss for training with small batch size,
Issue -
State: open - Opened by yikuanli over 2 years ago
- 5 comments
#123 - 16bit + Deterministic Training
Pull Request -
State: open - Opened by BardiaKh over 2 years ago
- 6 comments
#122 - Calculate the predicted risk score for each patient
Issue -
State: closed - Opened by leonadoan over 2 years ago
- 2 comments
#121 - Refactor out torchtuples
Pull Request -
State: closed - Opened by BardiaKh over 2 years ago
#120 - Bump version: 0.2.2 → 0.2.3
Pull Request -
State: closed - Opened by havakv over 2 years ago
#119 - TypeError: __init__() takes 1 positional argument but 4 were given
Issue -
State: closed - Opened by yangxulin over 2 years ago
- 3 comments
#118 - trouble in reading flchain data
Issue -
State: open - Opened by bingqing0729 over 2 years ago
- 2 comments
#117 - Training using PyTorch training loop
Issue -
State: open - Opened by BardiaKh over 2 years ago
- 1 comment
#116 - Error with CoxPH (DeepSurv) demo
Issue -
State: closed - Opened by amogh3892 over 2 years ago
- 5 comments
#115 - Could you please tell me the pros and cons of your time-dependent C-index, compared to td AUC?
Issue -
State: open - Opened by kyuchoi almost 3 years ago
- 1 comment
#114 - Is it possible to get 1) 95% confidence interval of time-dependent C-index and 2) calibration plot in Pycox package?
Issue -
State: open - Opened by kyuchoi almost 3 years ago
- 3 comments
#113 - 'BestWeights' callback gives worse C-Index scores / 'EarlyStopping' stops training after 1 epoch
Issue -
State: closed - Opened by pasalacquaian almost 3 years ago
- 4 comments
#112 - Fix #111
Pull Request -
State: closed - Opened by havakv almost 3 years ago
#111 - Can't save or load model if path have a dot.
Issue -
State: closed - Opened by ruiite almost 3 years ago
- 1 comment
#110 - time varying with Deep Learning
Issue -
State: open - Opened by PARODBE almost 3 years ago
- 1 comment
#109 - How to feed the model multiple inputs?
Issue -
State: open - Opened by kyuchoi almost 3 years ago
- 1 comment
#108 - error in Logistic Hazard Label transform
Issue -
State: open - Opened by paulamartingonzalez almost 3 years ago
- 2 comments
#107 - pycox in a singularity container for HPC
Issue -
State: closed - Opened by paulamartingonzalez almost 3 years ago
- 2 comments
#106 - individual hazard rate
Issue -
State: closed - Opened by srn284 almost 3 years ago
- 2 comments
#105 - How can I save and load torchtuple model ?
Issue -
State: open - Opened by kyuchoi almost 3 years ago
- 5 comments
#104 - Pycox importance variables
Issue -
State: open - Opened by Nusha34 almost 3 years ago
- 2 comments
#103 - Can I use lr_scheduler of Pytorch in model.fit ?
Issue -
State: closed - Opened by kyuchoi almost 3 years ago
- 2 comments
#102 - PMF methods
Pull Request -
State: closed - Opened by havakv almost 3 years ago
#101 - How to deal with data about clicks
Issue -
State: open - Opened by RomanGarayev about 3 years ago
- 4 comments
#100 - Event weighting for imbalanced datasets
Issue -
State: open - Opened by annawoodard about 3 years ago
- 1 comment
#99 - Definitions/ explanations of the data features
Issue -
State: open - Opened by sina-salek about 3 years ago
- 1 comment
#98 - Difference between Cox-PH and DeepSurv
Issue -
State: closed - Opened by lintumk about 3 years ago
- 2 comments
#97 - How predict just duration (continues value) of test dataset?
Issue -
State: open - Opened by mahdi1070 about 3 years ago
- 3 comments
#96 - Is there any method or way to get hazard ratio?
Issue -
State: open - Opened by inticoy about 3 years ago
- 6 comments
#95 - Numba TypingError: Failed in nopython mode pipeline (step: nopython frontend)
Issue -
State: closed - Opened by berkuva about 3 years ago
- 3 comments
#94 - Calculating the gradients and loss of model
Issue -
State: closed - Opened by ShadiRahimian about 3 years ago
- 3 comments
#93 - features in sac_admin5
Issue -
State: closed - Opened by berkuva about 3 years ago
- 1 comment
#92 - Time to event prediction using Graph Neural Networks
Issue -
State: open - Opened by paulamartingonzalez about 3 years ago
- 19 comments
#91 - About the events input for kaplan meier estimator
Issue -
State: closed - Opened by musikisomorphie about 3 years ago
- 4 comments
#90 - added conda recipe #88
Pull Request -
State: closed - Opened by sarthakpati about 3 years ago
#89 - Feature importance
Issue -
State: closed - Opened by arBest about 3 years ago
- 3 comments
#88 - Add conda recipe
Issue -
State: closed - Opened by sarthakpati over 3 years ago
- 10 comments
#87 - Incoporate Time-Varying Data in "CoxCCDataset" function
Issue -
State: open - Opened by Thanksforhelp over 3 years ago
- 3 comments
#86 - LogisticHazard.fit_transform() error
Issue -
State: closed - Opened by berkuva over 3 years ago
- 1 comment
#85 - How to save the best model during training
Issue -
State: closed - Opened by chingheng113 over 3 years ago
- 2 comments
#84 - Question about define the embedding sizes
Issue -
State: closed - Opened by hanxiaozhen2017 over 3 years ago
- 2 comments
#83 - Question about discretion time grid in 01_introduction.ipynb
Issue -
State: closed - Opened by hanxiaozhen2017 over 3 years ago
- 2 comments
#82 - Fix flchain URL #81
Pull Request -
State: closed - Opened by havakv over 3 years ago