Ecosyste.ms: Issues

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GitHub / havakv/pycox issues and pull requests

#181 - Update package publishing

Pull Request - State: closed - Opened by havakv 30 days ago

#180 - Update python version

Pull Request - State: closed - Opened by havakv about 1 month ago - 1 comment

#179 - [Installation] python setup.py egg_info did not run successfully

Issue - State: open - Opened by Taha-Bahadori about 2 months ago - 1 comment

#178 - Newton-Raphson optimization

Issue - State: open - Opened by dionrlnd 2 months ago

#176 - performance for ordinal categorical covariates

Issue - State: open - Opened by AdenilsonJr23 6 months ago

#174 - A model to add

Issue - State: open - Opened by emenand 8 months ago

#173 - ValueError: cannot convert float NaN to integer

Issue - State: open - Opened by Aniket99coder 11 months ago - 1 comment

#171 - _initialization of _internal failed

Issue - State: open - Opened by afuentes09651 about 1 year ago

#170 - Update eval_surv.py for pandas 2.0

Pull Request - State: closed - Opened by hminle about 1 year ago - 5 comments

#169 - Softmax layer and residual connections in DeepHitSingle model

Issue - State: open - Opened by Anivader about 1 year ago - 1 comment

#168 - ValueError: cannot convert float NaN to integer

Issue - State: open - Opened by Serendipity-Sylvia about 1 year ago - 1 comment

#167 - AttributeError: 'DeepHitSingle' object has no attribute 'state_dict'

Issue - State: open - Opened by zachfreitas over 1 year ago - 1 comment

#166 - Some question about the result of deephit_competing_risks

Issue - State: open - Opened by ymhyumenghan over 1 year ago - 2 comments

#165 - Calculating Estimated Population Survival Curve

Issue - State: open - Opened by puckybreg over 1 year ago - 4 comments

#164 - Reproduction of the results in JMLR19 paper

Issue - State: open - Opened by minxueric over 1 year ago - 1 comment

#163 - about hazard value!

Issue - State: open - Opened by alexxiecan over 1 year ago - 2 comments

#162 - AttributeError: 'Series' object has no attribute 'is_monotonic'

Issue - State: open - Opened by alexxiecan over 1 year ago - 19 comments

#161 - METABRIC Covariates Subset

Issue - State: open - Opened by sourcesync over 1 year ago - 1 comment

#160 - Use is_monotonic_increasing to allow Pandas 2.0

Pull Request - State: closed - Opened by matteo4diani over 1 year ago - 1 comment

#158 - L1 and L2 penalty coxph

Issue - State: open - Opened by Cesco16 over 1 year ago - 1 comment

#157 - Issue in function cox_time.py

Issue - State: open - Opened by RobbenJ over 1 year ago - 1 comment

#156 - is_monotonic should be update to is_monotonic_increasing

Issue - State: open - Opened by JIN-Li-stats over 1 year ago - 1 comment

#155 - How to use dropout in eval_

Issue - State: open - Opened by iuimaki almost 2 years ago - 1 comment

#154 - NLL PMF loss with partial PMF output

Issue - State: open - Opened by cirrostratus1 almost 2 years ago

#153 - PyCOX data leaking

Issue - State: open - Opened by hellorp1990 almost 2 years ago - 1 comment

#152 - Intuitions for padding model output columns?

Issue - State: open - Opened by siyueyang almost 2 years ago

#151 - Model reset parameters

Issue - State: open - Opened by hellorp1990 almost 2 years ago

#150 - Addressing issue #149 -> change `is not ` to `!=`

Pull Request - State: open - Opened by pooya-mohammadi almost 2 years ago

#148 - Is there any way around model.fit(x_train, y_train)?

Issue - State: open - Opened by kyuchoi almost 2 years ago

#147 - what is the function of gamma here

Issue - State: closed - Opened by linzhlalala almost 2 years ago - 2 comments

#146 - cite this package

Issue - State: open - Opened by skyee1 about 2 years ago - 1 comment

#145 - Continuous-Time Models Loss Calculation

Issue - State: open - Opened by up-tree about 2 years ago - 1 comment

#144 - Using logcumsumexp in loss calculation

Issue - State: open - Opened by avihu111 about 2 years ago - 1 comment

#143 - fix: fixing the part3 of the nll loss parametrized with PMF

Pull Request - State: closed - Opened by sergiogvz about 2 years ago - 1 comment

#142 - Training Time and CPU Usage

Issue - State: open - Opened by xiangtgao about 2 years ago - 1 comment

#140 - Output the same for every input (survival curves)

Issue - State: open - Opened by tomas-silveira about 2 years ago - 3 comments

#138 - Leave one out

Issue - State: closed - Opened by arBest about 2 years ago - 2 comments

#137 - same survival probabilities from predict_surv_df

Issue - State: open - Opened by mahootiha-maryam about 2 years ago - 2 comments

#136 - make a net based on pretrained model

Issue - State: open - Opened by mahootiha-maryam over 2 years ago - 1 comment

#134 - Transfer Learning - DeepHit with competing risk

Issue - State: open - Opened by ygivenx over 2 years ago - 2 comments

#133 - logistichazard and coxph basics

Issue - State: open - Opened by mahootiha-maryam over 2 years ago - 4 comments

#132 - Facing error for batch size that is greater than 1

Issue - State: open - Opened by mahootiha-maryam over 2 years ago - 1 comment

#131 - Use Unet as a net for feeding it to logistichazard

Issue - State: open - Opened by mahootiha-maryam over 2 years ago - 3 comments

#130 - Could not use GPU for pycox

Issue - State: open - Opened by Jwenyi over 2 years ago - 5 comments

#128 - Is it possible to apply saliency map or grad-cam with pycox?

Issue - State: open - Opened by chingheng113 over 2 years ago - 1 comment

#126 - Applying SHAP to pycox models

Issue - State: open - Opened by VanishingRasengan over 2 years ago - 7 comments
Labels: enhancement

#124 - no loss for training with small batch size,

Issue - State: open - Opened by yikuanli over 2 years ago - 5 comments

#123 - 16bit + Deterministic Training

Pull Request - State: open - Opened by BardiaKh over 2 years ago - 6 comments

#122 - Calculate the predicted risk score for each patient

Issue - State: closed - Opened by leonadoan over 2 years ago - 2 comments

#121 - Refactor out torchtuples

Pull Request - State: closed - Opened by BardiaKh over 2 years ago

#120 - Bump version: 0.2.2 → 0.2.3

Pull Request - State: closed - Opened by havakv over 2 years ago

#119 - TypeError: __init__() takes 1 positional argument but 4 were given

Issue - State: closed - Opened by yangxulin over 2 years ago - 3 comments

#118 - trouble in reading flchain data

Issue - State: open - Opened by bingqing0729 over 2 years ago - 2 comments

#117 - Training using PyTorch training loop

Issue - State: open - Opened by BardiaKh over 2 years ago - 1 comment

#116 - Error with CoxPH (DeepSurv) demo

Issue - State: closed - Opened by amogh3892 over 2 years ago - 5 comments

#112 - Fix #111

Pull Request - State: closed - Opened by havakv almost 3 years ago

#111 - Can't save or load model if path have a dot.

Issue - State: closed - Opened by ruiite almost 3 years ago - 1 comment

#110 - time varying with Deep Learning

Issue - State: open - Opened by PARODBE almost 3 years ago - 1 comment

#109 - How to feed the model multiple inputs?

Issue - State: open - Opened by kyuchoi almost 3 years ago - 1 comment

#108 - error in Logistic Hazard Label transform

Issue - State: open - Opened by paulamartingonzalez almost 3 years ago - 2 comments

#107 - pycox in a singularity container for HPC

Issue - State: closed - Opened by paulamartingonzalez almost 3 years ago - 2 comments

#106 - individual hazard rate

Issue - State: closed - Opened by srn284 almost 3 years ago - 2 comments

#105 - How can I save and load torchtuple model ?

Issue - State: open - Opened by kyuchoi almost 3 years ago - 5 comments

#104 - Pycox importance variables

Issue - State: open - Opened by Nusha34 almost 3 years ago - 2 comments

#103 - Can I use lr_scheduler of Pytorch in model.fit ?

Issue - State: closed - Opened by kyuchoi almost 3 years ago - 2 comments

#102 - PMF methods

Pull Request - State: closed - Opened by havakv almost 3 years ago

#101 - How to deal with data about clicks

Issue - State: open - Opened by RomanGarayev about 3 years ago - 4 comments

#100 - Event weighting for imbalanced datasets

Issue - State: open - Opened by annawoodard about 3 years ago - 1 comment

#99 - Definitions/ explanations of the data features

Issue - State: open - Opened by sina-salek about 3 years ago - 1 comment

#98 - Difference between Cox-PH and DeepSurv

Issue - State: closed - Opened by lintumk about 3 years ago - 2 comments

#97 - How predict just duration (continues value) of test dataset?

Issue - State: open - Opened by mahdi1070 about 3 years ago - 3 comments

#96 - Is there any method or way to get hazard ratio?

Issue - State: open - Opened by inticoy about 3 years ago - 6 comments

#95 - Numba TypingError: Failed in nopython mode pipeline (step: nopython frontend)

Issue - State: closed - Opened by berkuva about 3 years ago - 3 comments

#94 - Calculating the gradients and loss of model

Issue - State: closed - Opened by ShadiRahimian about 3 years ago - 3 comments

#93 - features in sac_admin5

Issue - State: closed - Opened by berkuva about 3 years ago - 1 comment

#92 - Time to event prediction using Graph Neural Networks

Issue - State: open - Opened by paulamartingonzalez about 3 years ago - 19 comments

#91 - About the events input for kaplan meier estimator

Issue - State: closed - Opened by musikisomorphie about 3 years ago - 4 comments

#90 - added conda recipe #88

Pull Request - State: closed - Opened by sarthakpati about 3 years ago

#89 - Feature importance

Issue - State: closed - Opened by arBest about 3 years ago - 3 comments

#88 - Add conda recipe

Issue - State: closed - Opened by sarthakpati over 3 years ago - 10 comments

#87 - Incoporate Time-Varying Data in "CoxCCDataset" function

Issue - State: open - Opened by Thanksforhelp over 3 years ago - 3 comments

#86 - LogisticHazard.fit_transform() error

Issue - State: closed - Opened by berkuva over 3 years ago - 1 comment

#85 - How to save the best model during training

Issue - State: closed - Opened by chingheng113 over 3 years ago - 2 comments

#84 - Question about define the embedding sizes

Issue - State: closed - Opened by hanxiaozhen2017 over 3 years ago - 2 comments

#83 - Question about discretion time grid in 01_introduction.ipynb

Issue - State: closed - Opened by hanxiaozhen2017 over 3 years ago - 2 comments

#82 - Fix flchain URL #81

Pull Request - State: closed - Opened by havakv over 3 years ago