hasindu2008/slow5lib issues and pull requests

#94 - fix slow5 version bump

Pull Request - State: closed - Opened by sashajenner 3 months ago

#93 - using $(MAKE)

Pull Request - State: closed - Opened by sashajenner 3 months ago

#92 - qts round

Pull Request - State: closed - Opened by sashajenner 4 months ago

#91 - update cmake to work with add_subdirectory

Pull Request - State: closed - Opened by hiruna72 5 months ago - 1 comment

#90 - Bigend

Pull Request - State: closed - Opened by hasindu2008 5 months ago

#89 - Fixworkflow

Pull Request - State: closed - Opened by hasindu2008 6 months ago

#88 - Big endian support

Issue - State: closed - Opened by hdeller 7 months ago - 6 comments

#87 - bench

Pull Request - State: closed - Opened by sashajenner 10 months ago

#86 - mmap

Pull Request - State: closed - Opened by sashajenner 10 months ago

#85 - vbz

Pull Request - State: closed - Opened by sashajenner 10 months ago

#84 - cmake add_subdirectory not working

Issue - State: closed - Opened by maximilianmordig 10 months ago - 2 comments

#83 - Conda py-3.11 package

Issue - State: closed - Opened by JannesSP about 1 year ago - 4 comments

#82 - Dev

Pull Request - State: closed - Opened by hasindu2008 about 1 year ago

#81 - Idx

Pull Request - State: closed - Opened by hasindu2008 about 1 year ago

#80 - Double free when using Path instead of str

Issue - State: closed - Opened by maximilianmordig about 1 year ago - 2 comments

#79 - Write altered reads to a slow5 file

Issue - State: closed - Opened by kaltinel about 1 year ago - 4 comments

#78 - Error when writing the headers in pyslow5

Issue - State: closed - Opened by uaudith about 1 year ago - 12 comments

#77 - Ex zd2

Pull Request - State: closed - Opened by hasindu2008 over 1 year ago

#76 - added slow5_idx_load_with

Pull Request - State: closed - Opened by hasindu2008 over 1 year ago

#75 - Pyslow5 aux update

Pull Request - State: closed - Opened by hasindu2008 over 1 year ago

#74 - Check values parsed to pyslow5 for dodgy characters

Issue - State: open - Opened by Psy-Fer over 1 year ago
Labels: pyslow5

#73 - Pyslow5mac

Pull Request - State: closed - Opened by hasindu2008 over 1 year ago

#72 - pyslow5: assign s5.header.num_read_groups to readable value

Issue - State: closed - Opened by Psy-Fer over 1 year ago - 1 comment
Labels: pyslow5

#71 - Problem about upload my env to bioconda

Issue - State: closed - Opened by JeremyQuo over 1 year ago - 2 comments

#70 - Error in write_record() function when initializing aux_meta fields

Issue - State: closed - Opened by KavinduJayas over 1 year ago - 5 comments

#69 - Add PyPi download/month badge

Pull Request - State: closed - Opened by Psy-Fer over 1 year ago

#68 - Downsample in slow5 format

Issue - State: closed - Opened by Yuan2yuan2yuan over 1 year ago - 11 comments

#67 - Installation error

Issue - State: closed - Opened by Yuan2yuan2yuan over 1 year ago - 4 comments

#66 - commented fprintfs

Pull Request - State: closed - Opened by hiruna72 almost 2 years ago - 1 comment

#65 - Lazymt

Pull Request - State: closed - Opened by hasindu2008 about 2 years ago

#64 - Write apir

Pull Request - State: closed - Opened by hasindu2008 over 2 years ago

#63 - Fastindex

Pull Request - State: closed - Opened by hasindu2008 over 2 years ago

#62 - Pywrite

Pull Request - State: closed - Opened by hasindu2008 over 2 years ago

#61 - Retained the Base-called information in SLOW5

Issue - State: closed - Opened by loganylchen over 2 years ago - 2 comments

#60 - initial implementation of getting a random batch

Pull Request - State: closed - Opened by hasindu2008 over 2 years ago

#59 - Dev

Pull Request - State: closed - Opened by hasindu2008 over 2 years ago

#58 - Pywrite

Pull Request - State: closed - Opened by Psy-Fer over 2 years ago

#57 - Dev

Pull Request - State: closed - Opened by hasindu2008 about 3 years ago

#56 - cleaning

Pull Request - State: closed - Opened by sashajenner about 3 years ago

#55 - Vbz hack

Pull Request - State: closed - Opened by hasindu2008 over 3 years ago

#54 - enum types added for end_reason

Pull Request - State: closed - Opened by sashajenner over 3 years ago

#53 - fixing custom float and double slow5 print

Pull Request - State: closed - Opened by sashajenner over 3 years ago

#52 - aux set string bug fix

Pull Request - State: closed - Opened by sashajenner over 3 years ago

#51 - some fixes and better eof checking

Pull Request - State: closed - Opened by sashajenner over 3 years ago

#50 - version cleaning

Pull Request - State: closed - Opened by sashajenner over 3 years ago

#49 - cleaning...

Pull Request - State: closed - Opened by sashajenner over 3 years ago

#48 - get_next_mem and slow5_rec_depress_parse

Pull Request - State: closed - Opened by sashajenner over 3 years ago

#47 - cleaning up...

Pull Request - State: closed - Opened by sashajenner over 3 years ago

#46 - cleanup...

Pull Request - State: closed - Opened by sashajenner over 3 years ago

#45 - cleanup and error checking 3

Pull Request - State: closed - Opened by sashajenner over 3 years ago

#44 - openmp based fetch records

Pull Request - State: closed - Opened by hiruna72 over 3 years ago

#43 - cleanup and error handling 2

Pull Request - State: closed - Opened by sashajenner over 3 years ago

#42 - cleanup and error handling 1

Pull Request - State: closed - Opened by sashajenner over 3 years ago

#41 - [Discussion] a more general format to replace HDF5

Issue - State: open - Opened by lh3 over 3 years ago - 3 comments

#40 - Dev

Pull Request - State: closed - Opened by hasindu2008 over 3 years ago

#39 - Update index.md

Pull Request - State: closed - Opened by hasindu2008 over 3 years ago

#38 - more api defs added

Pull Request - State: closed - Opened by hiruna72 over 3 years ago

#37 - docs api updated

Pull Request - State: closed - Opened by hiruna72 over 3 years ago

#36 - api docs

Pull Request - State: closed - Opened by hiruna72 over 3 years ago

#35 - get_aux_hdrs() for dumping all aux fields and their types

Issue - State: closed - Opened by Psy-Fer over 3 years ago - 2 comments
Labels: enhancement

#34 - python: get_header_names()

Issue - State: closed - Opened by Psy-Fer over 3 years ago - 3 comments
Labels: enhancement

#33 - CMake updated

Pull Request - State: closed - Opened by hiruna72 over 3 years ago

#32 - CMake added

Pull Request - State: closed - Opened by hiruna72 over 3 years ago - 1 comment

#31 - man page updated

Pull Request - State: closed - Opened by hiruna72 over 3 years ago

#30 - update merge.c

Pull Request - State: closed - Opened by hiruna72 over 3 years ago

#29 - Integrity test

Pull Request - State: closed - Opened by hiruna72 over 3 years ago

#28 - Integrity test

Pull Request - State: closed - Opened by hiruna72 over 3 years ago

#27 - merge multi threaded test and basecall test

Pull Request - State: closed - Opened by hiruna72 over 3 years ago

#26 - fix .blow5 read memory leak

Pull Request - State: closed - Opened by hiruna72 over 3 years ago - 2 comments

#25 - f2s s2f conversion test script

Pull Request - State: closed - Opened by hiruna72 over 3 years ago

#24 - simpler merge with threads

Pull Request - State: closed - Opened by hiruna72 over 3 years ago

#23 - correct compiler warnings

Pull Request - State: closed - Opened by hiruna72 over 3 years ago

#22 - Merge multithread

Pull Request - State: closed - Opened by hiruna72 over 3 years ago - 1 comment

#21 - do not use aux values when merging

Pull Request - State: closed - Opened by hiruna72 over 3 years ago

#20 - s2f Api integration

Pull Request - State: closed - Opened by hiruna72 over 3 years ago

#19 - Api integration

Pull Request - State: closed - Opened by hiruna72 over 3 years ago

#18 - merge api integration

Pull Request - State: closed - Opened by hiruna72 over 3 years ago

#17 - Check header attribute values and record values before writing to slow5 file

Issue - State: closed - Opened by hiruna72 over 3 years ago - 2 comments
Labels: enhancement

#16 - 'dont merge' - api integration merge test

Pull Request - State: closed - Opened by hiruna72 over 3 years ago

#15 - implement a function to return `slow5_hdr_t` given the read_group

Issue - State: closed - Opened by hiruna72 over 3 years ago - 3 comments
Labels: enhancement

#14 - f2s api integration 2

Pull Request - State: closed - Opened by hiruna72 over 3 years ago - 1 comment

#13 - Api integration

Pull Request - State: closed - Opened by hiruna72 over 3 years ago

#12 - fail if the double's precision exceeds 5 decimal places

Issue - State: closed - Opened by hiruna72 over 3 years ago - 6 comments

#11 - group split splits a multi read group file into single groups

Pull Request - State: closed - Opened by hiruna72 almost 4 years ago

#10 - Slow5 merge

Pull Request - State: closed - Opened by hiruna72 almost 4 years ago

#9 - Slow5 merge stage 2 - multi group read files support

Pull Request - State: closed - Opened by hiruna72 almost 4 years ago

#8 - slow5 merge stage 1

Pull Request - State: closed - Opened by hiruna72 almost 4 years ago - 1 comment

#7 - multiprocess slow5_to_fast5 stage 1

Pull Request - State: closed - Opened by hiruna72 almost 4 years ago

#6 - multiprocess fast5_to_slow5 stage1

Pull Request - State: closed - Opened by hiruna72 almost 4 years ago - 1 comment

#5 - generalize read_fast5() to support single-fast5

Pull Request - State: closed - Opened by hiruna72 almost 4 years ago

#4 - slow5 to fast5

Pull Request - State: closed - Opened by hiruna72 almost 4 years ago

#3 - Create fast5

Pull Request - State: closed - Opened by hiruna72 almost 4 years ago

#2 - close h5group and fix peak RAM increment

Pull Request - State: closed - Opened by hiruna72 almost 4 years ago

#1 - Create fast5

Pull Request - State: closed - Opened by hiruna72 almost 4 years ago - 4 comments

GitHub / hasindu2008/slow5lib issues and pull requests