Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / hartwigmedical/platinum issues and pull requests

#63 - DEV-3776 Fix JAR name in platinum script

Pull Request - State: closed - Opened by DFKoetsier 10 months ago

#62 - INFRA-344 Remedy eventual token expiry errors

Pull Request - State: open - Opened by nedleitch 11 months ago

#61 - INFRA-322 add git tag release automation to platinum

Pull Request - State: closed - Opened by KasperWolsink99 11 months ago

#60 - INFRA-320 Use new hmf-api client with added datatypes

Pull Request - State: closed - Opened by stefvanlieshout 11 months ago

#59 - Support alpha and beta version in pipeline5 tag

Pull Request - State: closed - Opened by stefvanlieshout about 1 year ago

#58 - DEV-3724 Update hmfapi java client

Pull Request - State: closed - Opened by stefvanlieshout about 1 year ago

#56 - DEV-3670 Sundry improvements to Platinum

Pull Request - State: closed - Opened by nedleitch over 1 year ago

#55 - DEV-3575 Fix reference-only mode

Pull Request - State: closed - Opened by nedleitch over 1 year ago

#54 - DEV-3550 Refactor to use Workload Identity (WIP)

Pull Request - State: closed - Opened by nedleitch over 1 year ago

#53 - DEV-3552 Improvements to Platinum flow

Pull Request - State: closed - Opened by nedleitch over 1 year ago

#52 - DEV-3487 Improve batch defaults and messaging

Pull Request - State: closed - Opened by nedleitch over 1 year ago

#51 - DEV-3465 Correct job submission logic

Pull Request - State: closed - Opened by nedleitch over 1 year ago

#50 - DEV-3396 Fix logic inversion

Pull Request - State: closed - Opened by nedleitch over 1 year ago

#49 - DEV-3378 Fix handling of existing jobs

Pull Request - State: closed - Opened by nedleitch over 1 year ago

#48 - Unable to build platinum-local-SNAPSHOT.jar

Issue - State: open - Opened by Jasper51297 over 1 year ago

#47 - DEV-3337 Fix auth loop

Pull Request - State: closed - Opened by nedleitch over 1 year ago

#46 - DEV-3323 Using a supplier instead.

Pull Request - State: closed - Opened by pauldwolfe over 1 year ago

#45 - DEV-3323 Populate PDL asynchronously

Pull Request - State: closed - Opened by nedleitch over 1 year ago

#44 - DEV-3326 Update Fabric8 dependency

Pull Request - State: closed - Opened by nedleitch over 1 year ago

#43 - Bump kubernetes-client from 5.3.0 to 5.3.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#42 - DEV-3324 Add client proxy to allow reconnects

Pull Request - State: closed - Opened by nedleitch over 1 year ago

#41 - DEV-3284 Add memory limits for non-rerun jobs

Pull Request - State: closed - Opened by nedleitch over 1 year ago

#39 - DEV-3229 Add a ConfigMap per pipeline job

Pull Request - State: closed - Opened by nedleitch almost 2 years ago

#38 - DEV-3228 Improve handling of multi-set samples

Pull Request - State: closed - Opened by nedleitch almost 2 years ago

#37 - DEV-3172 Fix problems found during run attempt

Pull Request - State: closed - Opened by mvanniekerkHartwig almost 2 years ago

#36 - DEV-3172 reformat and cleanup

Pull Request - State: closed - Opened by mvanniekerkHartwig almost 2 years ago

#34 - DEV-3118 Constant job count scheduler

Pull Request - State: closed - Opened by nedleitch almost 2 years ago

#33 - DEV-2987 Halt when node pool cannot be created

Pull Request - State: closed - Opened by nedleitch about 2 years ago

#32 - DEV-2956 Make new runs with is_hidden set

Pull Request - State: closed - Opened by nedleitch over 2 years ago

#31 - DEV-2715 Add Platinum JAR to Maven

Pull Request - State: closed - Opened by nedleitch almost 3 years ago

#30 - DEV-2618 Add support for tumor only

Pull Request - State: closed - Opened by pauldwolfe almost 3 years ago

#29 - DEV-2564 Platinum Docker container

Pull Request - State: closed - Opened by nedleitch almost 3 years ago

#28 - DEV-2618 Add job TTL argument to GCP config

Pull Request - State: closed - Opened by pauldwolfe almost 3 years ago

#27 - DEV-2569 Configure fastq input based on bucket structure

Pull Request - State: closed - Opened by pauldwolfe almost 3 years ago

#26 - DEV-2484 Add ability to specify creation of a node pool

Pull Request - State: closed - Opened by pauldwolfe about 3 years ago

#25 - Analyses does not complete on example data

Issue - State: closed - Opened by DominikGlodzik over 3 years ago - 3 comments

#24 - Refresh credentials on K8 exception

Pull Request - State: closed - Opened by pauldwolfe almost 4 years ago

#23 - DEV-1862 Bunch of improvements stemming for the initial ticket

Pull Request - State: closed - Opened by pauldwolfe almost 4 years ago

#22 - DEV-1864 Overhaul of platinum configuration

Pull Request - State: closed - Opened by pauldwolfe almost 4 years ago

#21 - DEV-1754 Set network tag config on the node pool

Pull Request - State: closed - Opened by pauldwolfe about 4 years ago

#20 - DEV-1754 Add cluster auto-scaling

Pull Request - State: closed - Opened by pauldwolfe about 4 years ago

#19 - DEV-1680 Upgrade Platinum JUnit

Pull Request - State: closed - Opened by nedleitch about 4 years ago

#18 - DEV-1669 Instructions for HG38

Pull Request - State: closed - Opened by nedleitch about 4 years ago

#17 - DEV-1655 Adjust job name to prevent duplicates instead of namespace

Pull Request - State: closed - Opened by pauldwolfe about 4 years ago

#16 - DEV-1631 Add option to use existing service account key

Pull Request - State: closed - Opened by pauldwolfe about 4 years ago

#15 - DEV-1629 Add config to use an existing JKS secret

Pull Request - State: closed - Opened by pauldwolfe over 4 years ago

#14 - DEV-1626 Allow for configuration of an existing cluster

Pull Request - State: closed - Opened by pauldwolfe over 4 years ago

#13 - DEV-1601 Configure platinum with a list of biopsies

Pull Request - State: closed - Opened by pauldwolfe over 4 years ago

#12 - DEV-1486 Make CRAM output off by default

Pull Request - State: closed - Opened by nedleitch over 4 years ago

#11 - DEV-1473 Docs, tests, script modularity

Pull Request - State: closed - Opened by nedleitch over 4 years ago

#10 - Updating README

Pull Request - State: closed - Opened by pauldwolfe over 4 years ago

#9 - DEV-1459

Pull Request - State: closed - Opened by pauldwolfe over 4 years ago

#8 - DEV-1458 Add platinum wrapper script and maven wrapper

Pull Request - State: closed - Opened by pauldwolfe over 4 years ago

#7 - DEV-1444 Refactor to decompose things into smaller units

Pull Request - State: closed - Opened by pauldwolfe over 4 years ago

#6 - Dev 1444

Pull Request - State: closed - Opened by nedleitch over 4 years ago

#5 - DEV-1454 Create a private key for generated service account and delete

Pull Request - State: closed - Opened by pauldwolfe over 4 years ago

#4 - DEV-1441 Create service account for platinum run

Pull Request - State: closed - Opened by pauldwolfe over 4 years ago

#3 - DEV-1436 Args and samples to JSON

Pull Request - State: closed - Opened by nedleitch over 4 years ago

#2 - DEV-1439 Find or create bucket based on run name

Pull Request - State: closed - Opened by pauldwolfe over 4 years ago

#1 - Some ideas on structure

Pull Request - State: closed - Opened by pauldwolfe over 4 years ago