Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / hartleys/QoRTs issues and pull requests

#89 - Excessive RAM usage

Issue - State: open - Opened by royfrancis almost 2 years ago - 6 comments

#88 - Paired end data where R1 length =/= R2 length

Issue - State: open - Opened by dzhang12 about 2 years ago

#84 - Aggregate gene mode in Qorts

Issue - State: open - Opened by scseekers about 4 years ago

#82 - How to generate QC.spliceJunctionCounts.novelSplices.txt.gz files

Issue - State: open - Opened by HeenaSaini over 4 years ago - 2 comments

#80 - Exception: SYNTAX ERROR!

Issue - State: closed - Opened by IlariaPalmi over 4 years ago - 2 comments

#79 - "IMMPOSSIBLE STATE! FATAL ERROR!" with Hisat2 data - Bioconda installation

Issue - State: open - Opened by J-Calvelo almost 5 years ago - 5 comments

#78 - AUTO GENERATE PLOTS R SCRIPT NOT WORKING

Issue - State: open - Opened by mya2152 about 5 years ago - 1 comment

#77 - QoRTs is looking for a random file which does not exist

Issue - State: closed - Opened by mya2152 about 5 years ago - 1 comment

#75 - java.lang.UnsupportedOperationException: empty.min

Issue - State: open - Opened by Hrovatin over 5 years ago

#74 - Get normalized read count for some genomic localizations

Issue - State: open - Opened by mmagnus almost 6 years ago - 1 comment

#73 - Fixing README to be compatible with Markdown

Pull Request - State: open - Opened by mmagnus almost 6 years ago

#72 - ReadPairs_ADV - QC.summary.txt

Issue - State: open - Opened by bio-la almost 6 years ago - 1 comment

#71 - Is version 1.3.6 stable?

Issue - State: closed - Opened by rspreafico-vir almost 6 years ago - 2 comments

#70 - Does QoRTs can take more than one fastq files ?

Issue - State: open - Opened by paulinefx over 6 years ago - 1 comment

#69 - Empty Counts File

Issue - State: open - Opened by sanchari24 over 6 years ago - 8 comments

#68 - High DROPPED_NOT_PROPER_PAIR and persistent warning about strandedness

Issue - State: closed - Opened by reventropy over 6 years ago - 4 comments

#67 - multiple input bam files

Issue - State: open - Opened by ccshao over 6 years ago - 2 comments

#66 - QoRTs error after aligning with STAR

Issue - State: open - Opened by sharmistha007 over 6 years ago - 7 comments

#65 - Exception in thread "main" java.lang.NoClassDefFoundError

Issue - State: open - Opened by topherconley over 6 years ago - 1 comment

#64 - QoRTs version 1.30 OutputGtfLine checkFmt: Attribute num not found!

Issue - State: open - Opened by chelauk over 6 years ago - 1 comment

#63 - SAM Validation Error

Issue - State: open - Opened by kcornick over 6 years ago

#62 - Clarification on renamed Single Ended option

Issue - State: open - Opened by fbearoff almost 7 years ago

#61 - RuntimeIOException: java.io.FileNotFoundException: --stranded

Issue - State: closed - Opened by ag009 almost 7 years ago - 1 comment

#60 - DROPPED_PAIR_STRANDS_MISMATCH

Issue - State: closed - Opened by fangpingmu almost 7 years ago

#59 - cannot find chromosome in genome FASTA file

Issue - State: open - Opened by AndrewLangvt almost 7 years ago - 1 comment

#58 - understanding Mapping location rates

Issue - State: closed - Opened by ccshao almost 7 years ago - 2 comments

#57 - long read QC

Issue - State: open - Opened by ehhill almost 7 years ago - 10 comments

#56 - FASTA file error message

Issue - State: open - Opened by fp215 almost 7 years ago - 5 comments

#55 - Extension: Interactive plotting

Issue - State: open - Opened by topherconley about 7 years ago

#54 - Java version for QoRTs?

Issue - State: open - Opened by ytakemon about 7 years ago - 2 comments

#53 - question

Issue - State: open - Opened by woshi0655 about 7 years ago

#52 - no output for "--runFunctions StrandCheck,GeneCalcs"

Issue - State: closed - Opened by ccshao about 7 years ago - 9 comments

#51 - the lack of a file

Issue - State: open - Opened by chyr03 about 7 years ago - 1 comment

#50 - Memory error

Issue - State: open - Opened by royfrancis about 7 years ago - 15 comments

#49 - Error message: "SYNTAX ERROR! Unrecognized Argument: inputData/SRC121.bam"

Issue - State: closed - Opened by spiya about 7 years ago - 1 comment

#48 - Can QoRTs be used for DNASeq BAM QC?

Issue - State: closed - Opened by royfrancis over 7 years ago - 5 comments

#47 - A question

Issue - State: open - Opened by chyr03 over 7 years ago - 1 comment

#46 - Error with mergeNovelSplices

Issue - State: closed - Opened by markusglass over 7 years ago - 1 comment

#45 - Change plotting order / Overplotting

Issue - State: closed - Opened by royfrancis over 7 years ago - 3 comments

#44 - Hisat2 support

Issue - State: closed - Opened by ctxchris over 7 years ago - 2 comments

#43 - qc results read error

Issue - State: closed - Opened by royfrancis over 7 years ago - 11 comments

#42 - Reads dropped in BAM file due to alignment to inconsistent strands

Issue - State: closed - Opened by nlawlor over 7 years ago - 10 comments

#41 - Ambiguous Insert size plot

Issue - State: open - Opened by frankbioinfo over 7 years ago - 3 comments

#40 - Mixture of single-end and paired-end reads error

Issue - State: closed - Opened by Tomoya89 over 7 years ago - 7 comments

#39 - QoRTs be installed on that R installation

Issue - State: closed - Opened by frankbioinfo over 7 years ago - 3 comments

#38 - possible Tophat error

Issue - State: open - Opened by LouisGil over 7 years ago - 1 comment

#37 - highlight Group

Issue - State: closed - Opened by remouski almost 8 years ago - 3 comments

#36 - max read length

Issue - State: open - Opened by remouski almost 8 years ago - 3 comments

#35 - Error during makeMultiPlot

Issue - State: closed - Opened by royfrancis almost 8 years ago - 2 comments

#34 - Efficiency tips

Issue - State: closed - Opened by royfrancis almost 8 years ago - 2 comments

#33 - FATAL_ERROR mergeWig QoRTs v1.2.26

Issue - State: closed - Opened by semacu almost 8 years ago - 2 comments

#32 - Error at generating counts and QC plots

Issue - State: closed - Opened by Tomoya89 almost 8 years ago - 21 comments

#31 - Error Loading QoRTs data into JunctionSeq

Issue - State: closed - Opened by mdurante1 almost 8 years ago

#30 - Error at makeSpliceJunctionBed step

Issue - State: closed - Opened by nimarafati almost 8 years ago - 1 comment

#29 - Mapped mate should have mate reference name

Issue - State: closed - Opened by alexpenson about 8 years ago - 2 comments

#28 - False positives in novelSplices.txt.gz?

Issue - State: closed - Opened by naumenko-sa about 8 years ago - 3 comments

#27 - Feature request: Allowing you to specify a prefix to output files

Issue - State: closed - Opened by c-guzman about 8 years ago - 2 comments

#26 - Feature request: subsample alignments

Issue - State: closed - Opened by tomsing1 about 8 years ago - 3 comments

#25 - Original BAM name from QoRTs output

Issue - State: closed - Opened by royfrancis over 8 years ago - 4 comments

#24 - ArrayIndexOutOfBoundsException: 1

Issue - State: closed - Opened by gonzalpk over 8 years ago - 1 comment

#23 - Extract raw information for Read Mapping Location Rates

Issue - State: closed - Opened by davemcg over 8 years ago - 3 comments

#22 - Issue with spike-ins

Issue - State: closed - Opened by royfrancis over 8 years ago - 5 comments

#21 - Fatal error

Issue - State: closed - Opened by bioinfo-dirty-jobs over 8 years ago - 3 comments

#20 - what can I do to fix the error?

Issue - State: closed - Opened by HIM72 over 8 years ago - 6 comments

#19 - merge(all)counts failing to create directories

Issue - State: closed - Opened by davemcg over 8 years ago - 4 comments

#18 - biotype coverage graph

Issue - State: closed - Opened by remouski over 8 years ago - 2 comments

#17 - Non-Issue issues

Issue - State: closed - Opened by royfrancis over 8 years ago - 5 comments

#16 - Error during read-in

Issue - State: closed - Opened by royfrancis over 8 years ago - 3 comments

#15 - Count discrepency

Issue - State: closed - Opened by royfrancis over 8 years ago - 2 comments

#14 - Inconsistent delimiters in QC.summary.txt

Issue - State: closed - Opened by tomsing1 over 8 years ago - 2 comments

#13 - LICENSE for the QoRTs R package

Issue - State: closed - Opened by tomsing1 over 8 years ago - 2 comments

#11 - Feature request: incorporate novel exons into mergeNovelSplice pipeline

Issue - State: closed - Opened by warrenmcg almost 9 years ago - 2 comments

#10 - Error: Invalid or corrupt jarfile QoRTs.jar

Issue - State: closed - Opened by misik almost 9 years ago - 2 comments

#9 - Question regarding a few gff files

Issue - State: closed - Opened by sahilseth about 9 years ago - 2 comments

#8 - Issue with the strandness test

Issue - State: closed - Opened by lxhuang7 about 9 years ago - 2 comments

#6 - numthreads option

Issue - State: closed - Opened by sahilseth about 9 years ago - 6 comments

#5 - New feature request

Issue - State: closed - Opened by lxhuang7 about 9 years ago - 9 comments

#4 - Add option to calculate mRIN scores

Issue - State: closed - Opened by jdidion over 9 years ago - 1 comment

#3 - QualityScoreDistribution function

Issue - State: closed - Opened by pzumbo over 9 years ago - 4 comments

#2 - GTF format

Issue - State: closed - Opened by colindaven over 9 years ago - 3 comments

#1 - More informative debugging

Issue - State: closed - Opened by jdidion almost 10 years ago - 14 comments