Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / hartleys/QoRTs issues and pull requests
#89 - Excessive RAM usage
Issue -
State: open - Opened by royfrancis almost 2 years ago
- 6 comments
#88 - Paired end data where R1 length =/= R2 length
Issue -
State: open - Opened by dzhang12 about 2 years ago
#87 - Extracting exon and junction coordinates and read/junction count info
Issue -
State: open - Opened by gacatag about 3 years ago
#86 - Error message: "FATAL ERROR: OutputGtfLine checkFmt: Attribute gene_id not found!
Issue -
State: open - Opened by libj5 almost 4 years ago
#85 - ERROR: EfficientGenomeSeqContainer: Attempted to extend buffer beyond chromosome span
Issue -
State: closed - Opened by royfrancis almost 4 years ago
- 4 comments
#84 - Aggregate gene mode in Qorts
Issue -
State: open - Opened by scseekers about 4 years ago
#83 - Error info: Exception in thread "main" java.util.NoSuchElementException
Issue -
State: open - Opened by royfrancis over 4 years ago
#82 - How to generate QC.spliceJunctionCounts.novelSplices.txt.gz files
Issue -
State: open - Opened by HeenaSaini over 4 years ago
- 2 comments
#81 - FATAL ERROR Error info: Exception in thread "main" java.lang.NullPointerException
Issue -
State: open - Opened by IlariaPalmi over 4 years ago
- 1 comment
#80 - Exception: SYNTAX ERROR!
Issue -
State: closed - Opened by IlariaPalmi over 4 years ago
- 2 comments
#79 - "IMMPOSSIBLE STATE! FATAL ERROR!" with Hisat2 data - Bioconda installation
Issue -
State: open - Opened by J-Calvelo almost 5 years ago
- 5 comments
#78 - AUTO GENERATE PLOTS R SCRIPT NOT WORKING
Issue -
State: open - Opened by mya2152 about 5 years ago
- 1 comment
#77 - QoRTs is looking for a random file which does not exist
Issue -
State: closed - Opened by mya2152 about 5 years ago
- 1 comment
#76 - Exception in thread "main" java.io.FileNotFoundException: /gpfs/ts0/projects/Research_Project-T113519/qc_collection/QoRTs_output/QC.9gZCUFz5rnuA.log (No such file or directory)
Issue -
State: closed - Opened by mya2152 about 5 years ago
- 1 comment
#75 - java.lang.UnsupportedOperationException: empty.min
Issue -
State: open - Opened by Hrovatin over 5 years ago
#74 - Get normalized read count for some genomic localizations
Issue -
State: open - Opened by mmagnus almost 6 years ago
- 1 comment
#73 - Fixing README to be compatible with Markdown
Pull Request -
State: open - Opened by mmagnus almost 6 years ago
#72 - ReadPairs_ADV - QC.summary.txt
Issue -
State: open - Opened by bio-la almost 6 years ago
- 1 comment
#71 - Is version 1.3.6 stable?
Issue -
State: closed - Opened by rspreafico-vir almost 6 years ago
- 2 comments
#70 - Does QoRTs can take more than one fastq files ?
Issue -
State: open - Opened by paulinefx over 6 years ago
- 1 comment
#69 - Empty Counts File
Issue -
State: open - Opened by sanchari24 over 6 years ago
- 8 comments
#68 - High DROPPED_NOT_PROPER_PAIR and persistent warning about strandedness
Issue -
State: closed - Opened by reventropy over 6 years ago
- 4 comments
#67 - multiple input bam files
Issue -
State: open - Opened by ccshao over 6 years ago
- 2 comments
#66 - QoRTs error after aligning with STAR
Issue -
State: open - Opened by sharmistha007 over 6 years ago
- 7 comments
#65 - Exception in thread "main" java.lang.NoClassDefFoundError
Issue -
State: open - Opened by topherconley over 6 years ago
- 1 comment
#64 - QoRTs version 1.30 OutputGtfLine checkFmt: Attribute num not found!
Issue -
State: open - Opened by chelauk over 6 years ago
- 1 comment
#63 - SAM Validation Error
Issue -
State: open - Opened by kcornick over 6 years ago
#62 - Clarification on renamed Single Ended option
Issue -
State: open - Opened by fbearoff almost 7 years ago
#61 - RuntimeIOException: java.io.FileNotFoundException: --stranded
Issue -
State: closed - Opened by ag009 almost 7 years ago
- 1 comment
#60 - DROPPED_PAIR_STRANDS_MISMATCH
Issue -
State: closed - Opened by fangpingmu almost 7 years ago
#59 - cannot find chromosome in genome FASTA file
Issue -
State: open - Opened by AndrewLangvt almost 7 years ago
- 1 comment
#58 - understanding Mapping location rates
Issue -
State: closed - Opened by ccshao almost 7 years ago
- 2 comments
#57 - long read QC
Issue -
State: open - Opened by ehhill almost 7 years ago
- 10 comments
#56 - FASTA file error message
Issue -
State: open - Opened by fp215 almost 7 years ago
- 5 comments
#55 - Extension: Interactive plotting
Issue -
State: open - Opened by topherconley about 7 years ago
#54 - Java version for QoRTs?
Issue -
State: open - Opened by ytakemon about 7 years ago
- 2 comments
#53 - question
Issue -
State: open - Opened by woshi0655 about 7 years ago
#52 - no output for "--runFunctions StrandCheck,GeneCalcs"
Issue -
State: closed - Opened by ccshao about 7 years ago
- 9 comments
#51 - the lack of a file
Issue -
State: open - Opened by chyr03 about 7 years ago
- 1 comment
#50 - Memory error
Issue -
State: open - Opened by royfrancis about 7 years ago
- 15 comments
#49 - Error message: "SYNTAX ERROR! Unrecognized Argument: inputData/SRC121.bam"
Issue -
State: closed - Opened by spiya about 7 years ago
- 1 comment
#48 - Can QoRTs be used for DNASeq BAM QC?
Issue -
State: closed - Opened by royfrancis over 7 years ago
- 5 comments
#47 - A question
Issue -
State: open - Opened by chyr03 over 7 years ago
- 1 comment
#46 - Error with mergeNovelSplices
Issue -
State: closed - Opened by markusglass over 7 years ago
- 1 comment
#45 - Change plotting order / Overplotting
Issue -
State: closed - Opened by royfrancis over 7 years ago
- 3 comments
#44 - Hisat2 support
Issue -
State: closed - Opened by ctxchris over 7 years ago
- 2 comments
#43 - qc results read error
Issue -
State: closed - Opened by royfrancis over 7 years ago
- 11 comments
#42 - Reads dropped in BAM file due to alignment to inconsistent strands
Issue -
State: closed - Opened by nlawlor over 7 years ago
- 10 comments
#41 - Ambiguous Insert size plot
Issue -
State: open - Opened by frankbioinfo over 7 years ago
- 3 comments
#40 - Mixture of single-end and paired-end reads error
Issue -
State: closed - Opened by Tomoya89 over 7 years ago
- 7 comments
#39 - QoRTs be installed on that R installation
Issue -
State: closed - Opened by frankbioinfo over 7 years ago
- 3 comments
#38 - possible Tophat error
Issue -
State: open - Opened by LouisGil over 7 years ago
- 1 comment
#37 - highlight Group
Issue -
State: closed - Opened by remouski almost 8 years ago
- 3 comments
#36 - max read length
Issue -
State: open - Opened by remouski almost 8 years ago
- 3 comments
#35 - Error during makeMultiPlot
Issue -
State: closed - Opened by royfrancis almost 8 years ago
- 2 comments
#34 - Efficiency tips
Issue -
State: closed - Opened by royfrancis almost 8 years ago
- 2 comments
#33 - FATAL_ERROR mergeWig QoRTs v1.2.26
Issue -
State: closed - Opened by semacu almost 8 years ago
- 2 comments
#32 - Error at generating counts and QC plots
Issue -
State: closed - Opened by Tomoya89 almost 8 years ago
- 21 comments
#31 - Error Loading QoRTs data into JunctionSeq
Issue -
State: closed - Opened by mdurante1 almost 8 years ago
#30 - Error at makeSpliceJunctionBed step
Issue -
State: closed - Opened by nimarafati almost 8 years ago
- 1 comment
#29 - Mapped mate should have mate reference name
Issue -
State: closed - Opened by alexpenson about 8 years ago
- 2 comments
#28 - False positives in novelSplices.txt.gz?
Issue -
State: closed - Opened by naumenko-sa about 8 years ago
- 3 comments
#27 - Feature request: Allowing you to specify a prefix to output files
Issue -
State: closed - Opened by c-guzman about 8 years ago
- 2 comments
#26 - Feature request: subsample alignments
Issue -
State: closed - Opened by tomsing1 about 8 years ago
- 3 comments
#25 - Original BAM name from QoRTs output
Issue -
State: closed - Opened by royfrancis over 8 years ago
- 4 comments
#24 - ArrayIndexOutOfBoundsException: 1
Issue -
State: closed - Opened by gonzalpk over 8 years ago
- 1 comment
#23 - Extract raw information for Read Mapping Location Rates
Issue -
State: closed - Opened by davemcg over 8 years ago
- 3 comments
#22 - Issue with spike-ins
Issue -
State: closed - Opened by royfrancis over 8 years ago
- 5 comments
#21 - Fatal error
Issue -
State: closed - Opened by bioinfo-dirty-jobs over 8 years ago
- 3 comments
#20 - what can I do to fix the error?
Issue -
State: closed - Opened by HIM72 over 8 years ago
- 6 comments
#19 - merge(all)counts failing to create directories
Issue -
State: closed - Opened by davemcg over 8 years ago
- 4 comments
#18 - biotype coverage graph
Issue -
State: closed - Opened by remouski over 8 years ago
- 2 comments
#17 - Non-Issue issues
Issue -
State: closed - Opened by royfrancis over 8 years ago
- 5 comments
#16 - Error during read-in
Issue -
State: closed - Opened by royfrancis over 8 years ago
- 3 comments
#15 - Count discrepency
Issue -
State: closed - Opened by royfrancis over 8 years ago
- 2 comments
#14 - Inconsistent delimiters in QC.summary.txt
Issue -
State: closed - Opened by tomsing1 over 8 years ago
- 2 comments
#13 - LICENSE for the QoRTs R package
Issue -
State: closed - Opened by tomsing1 over 8 years ago
- 2 comments
#12 - Attribute: "1"" is misformatted! Does not contain the break value: "\s+" pairString.split.length=1
Issue -
State: closed - Opened by genomaths almost 9 years ago
- 4 comments
#11 - Feature request: incorporate novel exons into mergeNovelSplice pipeline
Issue -
State: closed - Opened by warrenmcg almost 9 years ago
- 2 comments
#10 - Error: Invalid or corrupt jarfile QoRTs.jar
Issue -
State: closed - Opened by misik almost 9 years ago
- 2 comments
#9 - Question regarding a few gff files
Issue -
State: closed - Opened by sahilseth about 9 years ago
- 2 comments
#8 - Issue with the strandness test
Issue -
State: closed - Opened by lxhuang7 about 9 years ago
- 2 comments
#7 - When using bash less, the timestamp and text overlap. Not really a issue (very minor).
Issue -
State: closed - Opened by sahilseth about 9 years ago
- 2 comments
#6 - numthreads option
Issue -
State: closed - Opened by sahilseth about 9 years ago
- 6 comments
#5 - New feature request
Issue -
State: closed - Opened by lxhuang7 about 9 years ago
- 9 comments
#4 - Add option to calculate mRIN scores
Issue -
State: closed - Opened by jdidion over 9 years ago
- 1 comment
#3 - QualityScoreDistribution function
Issue -
State: closed - Opened by pzumbo over 9 years ago
- 4 comments
#2 - GTF format
Issue -
State: closed - Opened by colindaven over 9 years ago
- 3 comments
#1 - More informative debugging
Issue -
State: closed - Opened by jdidion almost 10 years ago
- 14 comments