Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / harrispopgen/mutyper issues and pull requests
#50 - New GATK missing genotype annotation
Issue -
State: open - Opened by WSDeWitt 5 months ago
#49 - JOSS citation
Pull Request -
State: closed - Opened by WSDeWitt about 1 year ago
#48 - JOSS requested affiliation edits
Pull Request -
State: closed - Opened by WSDeWitt about 1 year ago
#47 - JOSS review
Pull Request -
State: closed - Opened by WSDeWitt over 1 year ago
#46 - Example usage: reduce assumptions
Issue -
State: closed - Opened by izabelcavassim over 1 year ago
#45 - Add State of the field
Issue -
State: closed - Opened by izabelcavassim over 1 year ago
- 1 comment
#44 - Add Community Guidelines
Issue -
State: closed - Opened by izabelcavassim over 1 year ago
- 2 comments
#43 - Fix Documentation link
Issue -
State: closed - Opened by izabelcavassim over 1 year ago
#42 - Fix references in https://github.com/harrispopgen/mutyper/blob/master/paper/paper.md
Issue -
State: closed - Opened by izabelcavassim over 1 year ago
- 3 comments
#41 - Integration with Hail
Issue -
State: open - Opened by vladsavelyev over 1 year ago
- 1 comment
Labels: enhancement
#40 - JOSS prereview
Pull Request -
State: closed - Opened by WSDeWitt over 1 year ago
- 1 comment
#39 - JOSS paper
Pull Request -
State: closed - Opened by WSDeWitt over 1 year ago
- 2 comments
#38 - numpy implementation for spectra
Pull Request -
State: closed - Opened by Lukez-pi over 1 year ago
- 1 comment
#37 - issue 36: dealing with missing genotypes with mutyper variants
Pull Request -
State: closed - Opened by Lukez-pi over 1 year ago
#36 - mutyper variants converts missing genotypes to 0
Issue -
State: closed - Opened by Lukez-pi over 1 year ago
#35 - Changed the 'number' type of 'mutation type' to A in the VCF header
Pull Request -
State: closed - Opened by Lukez-pi about 2 years ago
- 3 comments
#34 - Don't count `phase==True` toward genotypes
Pull Request -
State: closed - Opened by WSDeWitt about 2 years ago
#33 - CLI tests
Pull Request -
State: closed - Opened by WSDeWitt over 2 years ago
#32 - Move docs build from the default branch to a orphan branch, and workflow to build on push to master
Pull Request -
State: closed - Opened by WSDeWitt over 2 years ago
#31 - Added a fix for adding too many counts when the GT is unknown
Pull Request -
State: closed - Opened by mrvollger over 2 years ago
#30 - more mutyper counts in spectra than expected
Issue -
State: closed - Opened by mrvollger over 2 years ago
- 13 comments
#29 - Docstweaks
Pull Request -
State: closed - Opened by WSDeWitt almost 3 years ago
#28 - Fix for ancestral subcommand compressed fasta input, extra logging info, and a snakemake
Pull Request -
State: closed - Opened by mrvollger almost 3 years ago
- 1 comment
#27 - Issue with directionality of the chain file and possible fasta indexing bug.
Issue -
State: closed - Opened by mrvollger almost 3 years ago
- 3 comments
#26 - mutyper targets can't handle compressed bed files
Issue -
State: open - Opened by ab08028 about 3 years ago
#25 - 14 strandedness test
Pull Request -
State: closed - Opened by WSDeWitt about 3 years ago
#24 - Proposed fix to bug #14
Pull Request -
State: closed - Opened by RenzoTale88 about 3 years ago
#23 - Fix bug #20
Pull Request -
State: closed - Opened by RenzoTale88 about 3 years ago
- 1 comment
#22 - spectra for haploids
Pull Request -
State: closed - Opened by WSDeWitt about 3 years ago
#21 - haploid counting in mutyper spectra
Issue -
State: closed - Opened by ab08028 about 3 years ago
- 6 comments
#20 - Problem with ancestor command
Issue -
State: closed - Opened by RenzoTale88 over 3 years ago
- 6 comments
#19 - haploid VCF parsing
Pull Request -
State: closed - Opened by WSDeWitt over 3 years ago
#18 - polarize genotypes, closes #17
Pull Request -
State: closed - Opened by WSDeWitt over 3 years ago
- 1 comment
#17 - ancestral polarization of individual genotypes
Issue -
State: closed - Opened by WSDeWitt over 3 years ago
Labels: bug
#16 - Randomize feature for spectra
Pull Request -
State: closed - Opened by goldmich over 3 years ago
- 1 comment
#15 - kSFS
Issue -
State: closed - Opened by barlavi1 over 3 years ago
- 1 comment
#14 - Strandedness issue
Issue -
State: closed - Opened by RenzoTale88 over 3 years ago
- 5 comments
#13 - 4 chains parse
Pull Request -
State: closed - Opened by WSDeWitt almost 4 years ago
#12 - Handle missing genotypes in input VCFs with hypergeometric projection for ksfs
Issue -
State: open - Opened by WSDeWitt almost 4 years ago
#11 - performance issues with accessing bgzipped ancestral fastas
Issue -
State: open - Opened by WSDeWitt almost 4 years ago
- 3 comments
#10 - Population spectra
Pull Request -
State: closed - Opened by WSDeWitt almost 4 years ago
#9 - strand-aware mutation contexts
Pull Request -
State: closed - Opened by WSDeWitt almost 4 years ago
#8 - population mutation spectra?
Issue -
State: closed - Opened by goldmich about 4 years ago
- 2 comments
#7 - might need to include the gcc package dependency in setup.py
Issue -
State: closed - Opened by Lukez-pi about 4 years ago
- 1 comment
#6 - use strand_file BED argument to orient context instead of collapsing by revcomp
Issue -
State: closed - Opened by WSDeWitt about 4 years ago
- 1 comment
#5 - spectra methods for Python API (not just CLI)
Issue -
State: open - Opened by WSDeWitt about 4 years ago
#4 - ancestral genome estimation
Issue -
State: closed - Opened by WSDeWitt about 4 years ago
- 1 comment
#3 - Create LICENSE
Pull Request -
State: closed - Opened by WSDeWitt over 4 years ago
#2 - packagify
Issue -
State: closed - Opened by WSDeWitt over 4 years ago