Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / harmslab/topiary issues and pull requests
#49 - AttributeError with toytree
Issue -
State: open - Opened by jsodicoff 2 months ago
#48 - Recurring TypeError with PrettyTree
Issue -
State: open - Opened by auroraab 3 months ago
- 2 comments
#47 - Update python-app.yml
Pull Request -
State: closed - Opened by harmsm 7 months ago
#46 - bug fixing
Pull Request -
State: open - Opened by harmsm 7 months ago
#45 - Cleanup
Pull Request -
State: closed - Opened by harmsm 8 months ago
#44 - Problem with pulling proteome from NCBI--solution found!
Issue -
State: open - Opened by ani-sch 9 months ago
- 3 comments
#43 - No bootstrap MSA files written in "Alignment to Ancestors" step
Issue -
State: closed - Opened by jmayoral1 about 1 year ago
- 2 comments
#42 - Error while running seed-to-alignment for proteins without known paralogs
Issue -
State: open - Opened by lbleicher over 1 year ago
#41 - Running topiary for species that are not on NCBI
Issue -
State: open - Opened by cyhkim almost 2 years ago
#40 - Notebook fails to build on pycairo
Issue -
State: open - Opened by HWaymentSteele almost 2 years ago
#39 - seed-to-alignment unable to retrieve proteome for key species
Issue -
State: open - Opened by benclifton almost 2 years ago
- 1 comment
#38 - updated for pandas 2
Pull Request -
State: closed - Opened by harmsm almost 2 years ago
#37 - bugfix: right response to seed species not found on ott
Pull Request -
State: closed - Opened by harmsm almost 2 years ago
#36 - All aditional sequences removed in seed-to-alignment step
Issue -
State: open - Opened by lbleicher almost 2 years ago
- 8 comments
#35 - minor bug fixes
Pull Request -
State: closed - Opened by harmsm almost 2 years ago
#34 - bugfix for partial md5 ncbi downloads
Pull Request -
State: closed - Opened by harmsm almost 2 years ago
#33 - Error in topiary-seed-to-alignment
Issue -
State: open - Opened by lbleicher almost 2 years ago
- 25 comments
#32 - Ncbi api key
Pull Request -
State: closed - Opened by harmsm about 2 years ago
#31 - Sets entrez API key from environment
Pull Request -
State: closed - Opened by odcambc about 2 years ago
- 1 comment
#30 - Add support for Entrez.api_key
Issue -
State: closed - Opened by odcambc about 2 years ago
- 4 comments
#29 - fixed np.float and nfs bugs
Pull Request -
State: closed - Opened by harmsm about 2 years ago
#28 - numpy 1.24 doesn't like np.float()
Issue -
State: closed - Opened by jkaczmarski about 2 years ago
- 2 comments
#27 - OSError: [Errno 39] Directory not empty
Issue -
State: closed - Opened by jkaczmarski about 2 years ago
- 7 comments
#26 - clean up to docs
Pull Request -
State: closed - Opened by harmsm about 2 years ago
#25 - ready for pre-release
Pull Request -
State: closed - Opened by harmsm about 2 years ago
#24 - major updates to docs
Pull Request -
State: closed - Opened by harmsm about 2 years ago
#23 - Minor edits to protocol.rst
Pull Request -
State: closed - Opened by Kona-O about 2 years ago
#22 - wrap chdir functions, bug fixes
Pull Request -
State: closed - Opened by harmsm about 2 years ago
#21 - much improved final report code
Pull Request -
State: closed - Opened by harmsm about 2 years ago
#20 - discard_key definition updated
Pull Request -
State: closed - Opened by Kona-O about 2 years ago
#19 - ready for beta release
Pull Request -
State: closed - Opened by harmsm about 2 years ago
#18 - Updated example seed dataset in this repo
Pull Request -
State: closed - Opened by Kona-O about 2 years ago
- 1 comment
#17 - new features
Pull Request -
State: closed - Opened by harmsm about 2 years ago
#16 - intermediate commit; blocked in reports and updated mpi for cola
Pull Request -
State: closed - Opened by harmsm about 2 years ago
#15 - Several updates to protocol.rst and added examples directory containing notebooks
Pull Request -
State: closed - Opened by Kona-O over 2 years ago
#14 - Updated documentation
Pull Request -
State: closed - Opened by harmsm over 2 years ago
#13 - Filled in docs
Pull Request -
State: closed - Opened by harmsm over 2 years ago
#12 - functional reconciliation bootstrapping
Pull Request -
State: closed - Opened by harmsm over 2 years ago
#11 - clean up and refactor
Pull Request -
State: closed - Opened by harmsm over 2 years ago
#10 - docs updates, fixing apidoc for readthedocs
Pull Request -
State: closed - Opened by harmsm over 2 years ago
#9 - Pre-release commits
Pull Request -
State: closed - Opened by harmsm over 2 years ago
#8 - pre-release draft
Pull Request -
State: closed - Opened by harmsm over 2 years ago
- 1 comment
#7 - final draft of release API
Pull Request -
State: closed - Opened by harmsm over 2 years ago
#6 - updated reverse blasting
Pull Request -
State: closed - Opened by harmsm almost 3 years ago
#5 - fixed reverse blast
Pull Request -
State: closed - Opened by harmsm almost 3 years ago
#4 - stitched together final pipeline architecture before submission
Pull Request -
State: closed - Opened by harmsm almost 3 years ago
#3 - now checks all models
Pull Request -
State: closed - Opened by harmsm over 3 years ago
#2 - update test yaml
Pull Request -
State: closed - Opened by harmsm over 3 years ago
#1 - now passing flake and pytest
Pull Request -
State: closed - Opened by harmsm over 3 years ago