Ecosyste.ms: Issues

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GitHub / harmslab/gpmap issues and pull requests

#37 - Is it suitable for whole gene?

Issue - State: open - Opened by 326reborn over 1 year ago - 2 comments

#36 - Bump certifi from 2020.6.20 to 2022.12.7

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#35 - Bump pillow from 7.2.0 to 9.3.0

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#34 - Bump pillow from 7.2.0 to 9.0.1

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#33 - Bump pillow from 7.2.0 to 9.0.0

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#32 - Bump pillow from 7.2.0 to 8.3.2

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#31 - testing framework now in place

Pull Request - State: closed - Opened by harmsm over 3 years ago

#30 - update to main, find missing genotypes

Pull Request - State: closed - Opened by harmsm over 3 years ago

#29 - Bump pillow from 7.2.0 to 8.2.0

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#28 - Bump py from 1.9.0 to 1.10.0

Pull Request - State: open - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies

#27 - Bump pillow from 7.2.0 to 8.1.1

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies

#26 - minor bug fix; penotypes -> phenotypes

Pull Request - State: closed - Opened by harmsm almost 6 years ago

#25 - add n_mutations column to gpmap DF

Pull Request - State: closed - Opened by Zsailer almost 6 years ago

#24 - added human-readable site labels to gpmap

Pull Request - State: closed - Opened by harmsm almost 6 years ago

#23 - Mutation lookup table.

Pull Request - State: closed - Opened by Zsailer almost 6 years ago - 2 comments

#22 - make phenotypes optional

Pull Request - State: closed - Opened by harmsm almost 6 years ago - 5 comments

#21 - move data to data field in dict/json structure

Pull Request - State: closed - Opened by Zsailer almost 6 years ago

#20 - Move data under "data" key in dictionary/json format.

Issue - State: closed - Opened by Zsailer almost 6 years ago - 1 comment

#18 - Add Pipfile and a few extra methods to main object.

Pull Request - State: closed - Opened by Zsailer over 6 years ago

#17 - multipeak simulation and DNA option for random mutation set function

Pull Request - State: closed - Opened by lgoldbach over 6 years ago - 1 comment

#16 - what to do about extra data?

Issue - State: closed - Opened by Zsailer over 6 years ago - 3 comments

#15 - Using VCF files?

Issue - State: closed - Opened by joneill-code over 6 years ago - 8 comments

#14 - Change repr to show dataframe and add missing genotypes method.

Pull Request - State: closed - Opened by Zsailer over 6 years ago

#13 - Flexibility in Mt. Fuji model

Pull Request - State: closed - Opened by Zsailer almost 7 years ago

#12 - sample methods added

Pull Request - State: closed - Opened by Zsailer about 7 years ago

#11 - Flatten binary map

Pull Request - State: closed - Opened by Zsailer about 7 years ago

#10 - Clean up core logic

Pull Request - State: closed - Opened by Zsailer about 7 years ago

#9 - fix some json reading/writing bugs

Pull Request - State: closed - Opened by Zsailer over 7 years ago

#8 - explicitly inherit new style object for python 2

Pull Request - State: closed - Opened by Zsailer over 7 years ago

#7 - Remove old subpackages from setup.py

Pull Request - State: closed - Opened by Zsailer over 7 years ago

#6 - GenotypePhenotypeMap throws error

Issue - State: closed - Opened by jamaltas over 7 years ago - 5 comments

#5 - Adding evolver functions to the evolve module, no networkX needed

Pull Request - State: closed - Opened by Zsailer about 8 years ago

#4 - Adding a bunch of simulation classes

Pull Request - State: closed - Opened by Zsailer about 8 years ago

#3 - added sanity checking for subspace sequences

Pull Request - State: closed - Opened by harmsm about 8 years ago - 1 comment

#2 - Renaming package

Pull Request - State: closed - Opened by Zsailer about 8 years ago

#1 - Major refactoring and documentation

Pull Request - State: closed - Opened by Zsailer over 8 years ago