hammerlab/stratocumulus issues and pull requests

#56 - add `gawk` as a core dependency (for NetMHC tools)

Pull Request - State: open - Opened by armish about 8 years ago

#56 - add `gawk` as a core dependency (for NetMHC tools)

Pull Request - State: open - Opened by armish about 8 years ago

#55 - Increase/allow user to set size of Ketrew node

Issue - State: open - Opened by ihodes over 8 years ago - 1 comment

#55 - Increase/allow user to set size of Ketrew node

Issue - State: open - Opened by ihodes over 8 years ago - 1 comment

#54 - Fetch stdout/stderr for jobs run on the PBS backend

Issue - State: closed - Opened by hammer over 8 years ago - 1 comment

#54 - Fetch stdout/stderr for jobs run on the PBS backend

Issue - State: closed - Opened by hammer over 8 years ago - 1 comment

#53 - Put emacs on the docker image

Issue - State: closed - Opened by hammer over 8 years ago - 6 comments

#53 - Put emacs on the docker image

Issue - State: closed - Opened by hammer over 8 years ago - 6 comments

#52 - PBS walltime limits

Issue - State: open - Opened by arahuja over 8 years ago - 2 comments

#52 - PBS walltime limits

Issue - State: open - Opened by arahuja over 8 years ago - 2 comments

#51 - Fix handling of firewall rules

Pull Request - State: closed - Opened by smondet over 8 years ago - 1 comment

#51 - Fix handling of firewall rules

Pull Request - State: closed - Opened by smondet over 8 years ago - 1 comment

#50 - Add option to open ports on the pbs-server

Pull Request - State: closed - Opened by smondet over 8 years ago

#49 - Fix #48

Pull Request - State: closed - Opened by smondet over 8 years ago - 1 comment

#49 - Fix #48

Pull Request - State: closed - Opened by smondet over 8 years ago - 1 comment

#48 - the `.ssh/` directory the cluster-user(s) is now managed by concurrent jobs

Issue - State: closed - Opened by smondet over 8 years ago
Labels: bug

#48 - the `.ssh/` directory the cluster-user(s) is now managed by concurrent jobs

Issue - State: closed - Opened by smondet over 8 years ago
Labels: bug

#47 - A few fixes

Pull Request - State: closed - Opened by smondet over 8 years ago - 1 comment

#47 - A few fixes

Pull Request - State: closed - Opened by smondet over 8 years ago - 1 comment

#46 - More Biokepi dependencies

Issue - State: closed - Opened by smondet over 8 years ago

#46 - More Biokepi dependencies

Issue - State: closed - Opened by smondet over 8 years ago

#45 - Add option to specify additional packages

Pull Request - State: closed - Opened by ihodes over 8 years ago

#45 - Add option to specify additional packages

Pull Request - State: closed - Opened by ihodes over 8 years ago

#44 - `gcpketrew.sh` improvements

Pull Request - State: closed - Opened by smondet over 8 years ago - 3 comments

#44 - `gcpketrew.sh` improvements

Pull Request - State: closed - Opened by smondet over 8 years ago - 3 comments

#43 - Add Postgres server option

Issue - State: open - Opened by ihodes over 8 years ago

#43 - Add Postgres server option

Issue - State: open - Opened by ihodes over 8 years ago

#42 - Make the Ketrew Docker image configurable

Pull Request - State: closed - Opened by smondet over 8 years ago

#42 - Make the Ketrew Docker image configurable

Pull Request - State: closed - Opened by smondet over 8 years ago

#41 - Fix #36 and #40

Pull Request - State: closed - Opened by smondet over 8 years ago - 1 comment

#41 - Fix #36 and #40

Pull Request - State: closed - Opened by smondet over 8 years ago - 1 comment

#40 - Connection problem between compute nodes

Issue - State: closed - Opened by smondet over 8 years ago - 2 comments

#40 - Connection problem between compute nodes

Issue - State: closed - Opened by smondet over 8 years ago - 2 comments

#39 - Condition too weak in the node that gets `gcloudnfs`

Issue - State: closed - Opened by smondet over 8 years ago

#39 - Condition too weak in the node that gets `gcloudnfs`

Issue - State: closed - Opened by smondet over 8 years ago

#38 - add zone when converting nfs to node

Pull Request - State: closed - Opened by arahuja over 8 years ago - 1 comment

#38 - add zone when converting nfs to node

Pull Request - State: closed - Opened by arahuja over 8 years ago - 1 comment

#37 - Fix missing dependency on user creation

Pull Request - State: closed - Opened by smondet over 8 years ago

#37 - Fix missing dependency on user creation

Pull Request - State: closed - Opened by smondet over 8 years ago

#36 - Point people to Stratotemplate

Issue - State: closed - Opened by ihodes over 8 years ago

#36 - Point people to Stratotemplate

Issue - State: closed - Opened by ihodes over 8 years ago

#35 - Update to Ketrew API changes

Pull Request - State: closed - Opened by smondet over 8 years ago - 1 comment

#35 - Update to Ketrew API changes

Pull Request - State: closed - Opened by smondet over 8 years ago - 1 comment

#34 - Avoid shell expansion of `~`

Pull Request - State: closed - Opened by smondet over 8 years ago

#34 - Avoid shell expansion of `~`

Pull Request - State: closed - Opened by smondet over 8 years ago

#33 - Make wait loops one-liners (#32)

Pull Request - State: closed - Opened by smondet over 8 years ago

#33 - Make wait loops one-liners (#32)

Pull Request - State: closed - Opened by smondet over 8 years ago

#32 - All commands should be one-liners

Issue - State: closed - Opened by smondet over 8 years ago - 1 comment
Labels: bug

#32 - All commands should be one-liners

Issue - State: closed - Opened by smondet over 8 years ago - 1 comment
Labels: bug

#31 - Make the PBS server not a compute node

Pull Request - State: closed - Opened by smondet over 8 years ago

#31 - Make the PBS server not a compute node

Pull Request - State: closed - Opened by smondet over 8 years ago

#30 - Add tcsh as a biokepi dependency for netmhc tools

Pull Request - State: closed - Opened by armish over 8 years ago

#30 - Add tcsh as a biokepi dependency for netmhc tools

Pull Request - State: closed - Opened by armish over 8 years ago

#29 - Improve ux

Pull Request - State: closed - Opened by smondet over 8 years ago

#29 - Improve ux

Pull Request - State: closed - Opened by smondet over 8 years ago

#28 - Make the Ketrew server optional (#27)

Pull Request - State: closed - Opened by smondet over 8 years ago

#28 - Make the Ketrew server optional (#27)

Pull Request - State: closed - Opened by smondet over 8 years ago

#27 - Make Ketrew server optional

Issue - State: closed - Opened by smondet over 8 years ago

#27 - Make Ketrew server optional

Issue - State: closed - Opened by smondet over 8 years ago

#26 - More docker

Pull Request - State: closed - Opened by smondet over 8 years ago

#26 - More docker

Pull Request - State: closed - Opened by smondet over 8 years ago

#25 - Ketrew kontainer deployment

Pull Request - State: closed - Opened by smondet over 8 years ago - 1 comment

#25 - Ketrew kontainer deployment

Pull Request - State: closed - Opened by smondet over 8 years ago - 1 comment

#24 - Fix `~host` argument for some conditions (fix #23)

Pull Request - State: closed - Opened by smondet over 8 years ago

#24 - Fix `~host` argument for some conditions (fix #23)

Pull Request - State: closed - Opened by smondet over 8 years ago

#23 - Host not propagated through ensure conditions

Issue - State: closed - Opened by ihodes over 8 years ago
Labels: bug

#23 - Host not propagated through ensure conditions

Issue - State: closed - Opened by ihodes over 8 years ago
Labels: bug

#22 - Suuport for new gcloudnfs implementation

Pull Request - State: closed - Opened by smondet over 8 years ago

#22 - Suuport for new gcloudnfs implementation

Pull Request - State: closed - Opened by smondet over 8 years ago

#21 - Update to new gcloudnfs

Issue - State: closed - Opened by smondet over 8 years ago

#21 - Update to new gcloudnfs

Issue - State: closed - Opened by smondet over 8 years ago

#20 - Additional helpers

Pull Request - State: closed - Opened by smondet over 8 years ago - 1 comment

#20 - Additional helpers

Pull Request - State: closed - Opened by smondet over 8 years ago - 1 comment

#19 - NFS deployments

Pull Request - State: closed - Opened by smondet over 8 years ago - 1 comment

#19 - NFS deployments

Pull Request - State: closed - Opened by smondet over 8 years ago - 1 comment

#18 - Make Java version configurable

Pull Request - State: closed - Opened by smondet over 8 years ago - 1 comment

#18 - Make Java version configurable

Pull Request - State: closed - Opened by smondet over 8 years ago - 1 comment

#17 - Multiple NFS servers

Issue - State: closed - Opened by arahuja over 8 years ago - 3 comments

#17 - Multiple NFS servers

Issue - State: closed - Opened by arahuja over 8 years ago - 3 comments

#16 - Allow selection of Java version on compute nodes

Issue - State: closed - Opened by arahuja over 8 years ago

#16 - Allow selection of Java version on compute nodes

Issue - State: closed - Opened by arahuja over 8 years ago

#15 - Ketrew client requires TLS

Issue - State: closed - Opened by arahuja over 8 years ago

#15 - Ketrew client requires TLS

Issue - State: closed - Opened by arahuja over 8 years ago

#14 - DNS constant name for the Ketrew server

Issue - State: open - Opened by smondet over 8 years ago

#14 - DNS constant name for the Ketrew server

Issue - State: open - Opened by smondet over 8 years ago

#13 - Create compute nodes without external IP address

Issue - State: open - Opened by smondet over 8 years ago - 1 comment

#13 - Create compute nodes without external IP address

Issue - State: open - Opened by smondet over 8 years ago - 1 comment

#12 - Function: Deployment.t → Biokepi.Machine.t

Issue - State: closed - Opened by smondet over 8 years ago - 1 comment

#12 - Function: Deployment.t → Biokepi.Machine.t

Issue - State: closed - Opened by smondet over 8 years ago - 1 comment

#11 - Make test NFS mount witness configurable

Issue - State: open - Opened by smondet over 8 years ago

#11 - Make test NFS mount witness configurable

Issue - State: open - Opened by smondet over 8 years ago

#10 - Containerized build of Ketrew

Issue - State: closed - Opened by smondet over 8 years ago - 1 comment

#10 - Containerized build of Ketrew

Issue - State: closed - Opened by smondet over 8 years ago - 1 comment

#9 - HTTP server for results and things like IGV.xml files

Issue - State: open - Opened by smondet over 8 years ago - 3 comments

#9 - HTTP server for results and things like IGV.xml files

Issue - State: open - Opened by smondet over 8 years ago - 3 comments

#8 - Create cluster-user with custom SSH keys

Issue - State: closed - Opened by smondet over 8 years ago

#7 - Distributed filesystem

Issue - State: open - Opened by smondet over 8 years ago - 4 comments

#6 - PostgreSQL server for the Ketrew server

Issue - State: open - Opened by smondet over 8 years ago

#5 - Document how to use

Issue - State: open - Opened by smondet over 8 years ago

#4 - Function to build (output?) the Biokepi `Machine.t`

Issue - State: closed - Opened by smondet over 8 years ago

GitHub / hammerlab/stratocumulus issues and pull requests