Ecosyste.ms: Issues

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GitHub / hammerlab/flowdec issues and pull requests

#44 - How does padding 'none' work?

Issue - State: open - Opened by scottbrooks98 12 months ago - 1 comment

#43 - Impractical GPU memory requirements

Issue - State: open - Opened by SebastienTs over 2 years ago - 4 comments

#42 - skimage error when opening 3D tiffs

Issue - State: closed - Opened by alcrevenna almost 3 years ago - 5 comments

#41 - Deconvolution use pixel based psf

Issue - State: closed - Opened by romainGuiet over 3 years ago - 2 comments

#40 - How to release the memory after flowdec processing

Issue - State: closed - Opened by joaomamede over 4 years ago - 2 comments

#39 - How to use shared RAM+VRAM

Issue - State: closed - Opened by joaomamede over 4 years ago

#38 - Anyone running with an AMD radeon?

Issue - State: open - Opened by joaomamede over 4 years ago

#37 - Bump junit from 4.3.1 to 4.13.1 in /java/flowdec

Pull Request - State: open - Opened by dependabot[bot] over 4 years ago
Labels: dependencies

#36 - PSF min max and type.

Issue - State: closed - Opened by joaomamede over 4 years ago - 2 comments

#35 - figure out adding new algorithms / how to smooth

Pull Request - State: open - Opened by chalkie666 over 4 years ago - 4 comments

#34 - Comparison with scikit-image / cupyimg

Issue - State: closed - Opened by chrisroat over 4 years ago - 2 comments

#33 - Running out of memory in 4GB Quadro T2000

Issue - State: closed - Opened by joaomamede over 4 years ago - 5 comments

#32 - Estimation of required memory

Issue - State: closed - Opened by snehashis-roy over 4 years ago - 6 comments

#31 - Lightsheet Processing

Issue - State: open - Opened by jesusdpa1 almost 5 years ago - 6 comments

#30 - choosing parameters for Lightsheet microscopy data

Issue - State: closed - Opened by jesusdpa1 about 5 years ago - 2 comments

#29 - Longer time for first deconvolution in a process

Issue - State: closed - Opened by chrisroat about 5 years ago - 5 comments

#28 - Python updates for recent changes in tensorflow and dependent libs

Pull Request - State: closed - Opened by chrisroat about 5 years ago - 4 comments

#27 - Using newer tensorflow versions

Issue - State: closed - Opened by chrisroat about 5 years ago - 1 comment

#26 - ResourceExhausedError for z-stack

Issue - State: closed - Opened by naureeng over 5 years ago - 2 comments

#25 - ResourceExhaustedError

Issue - State: closed - Opened by naureeng over 5 years ago - 2 comments

#24 - Fix non-boolean sum in assertion

Issue - State: open - Opened by eric-czech almost 6 years ago

#23 - Command Line Deconvolution Troubleshooting

Issue - State: closed - Opened by naureeng almost 6 years ago - 6 comments

#22 - TypeError: unexpected keyword argument: img_num

Issue - State: closed - Opened by naureeng almost 6 years ago - 2 comments

#21 - even shapes required for `real_domain_fft`

Issue - State: open - Opened by VolkerH almost 6 years ago

#20 - Tile-by-tile deconvolution example notebook

Pull Request - State: closed - Opened by VolkerH almost 6 years ago - 1 comment

#19 - Flowdec video memory usage

Issue - State: closed - Opened by JulianPitney almost 6 years ago - 13 comments

#18 - optimal padding that is more efficient than log2

Pull Request - State: closed - Opened by VolkerH almost 6 years ago - 4 comments

#17 - Batch Input Operation Question

Issue - State: open - Opened by thudepwcp13 almost 6 years ago - 8 comments

#16 - windowing and type conversion possbile using `input_prep_fn`, `output_prep_fn` ?

Issue - State: open - Opened by VolkerH almost 6 years ago - 7 comments

#15 - GPU memory exhaustion errors

Issue - State: closed - Opened by eric-czech almost 6 years ago - 1 comment

#13 - Problem with running notebooks in series

Issue - State: closed - Opened by dmilkie almost 6 years ago - 2 comments

#12 - Feature request:Voxel sizes for PSF and data

Issue - State: closed - Opened by dmilkie about 6 years ago - 7 comments

#11 - Drop automatic tensorflow installation.

Pull Request - State: closed - Opened by russellb about 6 years ago - 3 comments

#10 - flowdec installation downloads tensorflow when tensorflow-gpu already installed

Issue - State: closed - Opened by elktoe about 6 years ago - 2 comments

#9 - Observer function example

Issue - State: closed - Opened by VolkerH about 6 years ago - 4 comments

#8 - Release flowdec on pypi

Issue - State: closed - Opened by russellb over 6 years ago - 7 comments

#7 - Expand CI coverage to include running deconvolution.

Pull Request - State: closed - Opened by russellb over 6 years ago - 3 comments

#6 - Add tox and travis-ci configuration.

Pull Request - State: closed - Opened by russellb over 6 years ago - 1 comment

#5 - Add linter and travis build

Issue - State: closed - Opened by eric-czech over 6 years ago - 7 comments

#4 - Replace tfdecon import with flowdec.

Pull Request - State: closed - Opened by russellb over 6 years ago

#3 - Add Dockerfile for image based on local source copy.

Pull Request - State: closed - Opened by russellb over 6 years ago - 3 comments

#2 - Python tweaks

Pull Request - State: closed - Opened by russellb over 6 years ago - 1 comment

#1 - No module named 'tfdecon'

Issue - State: closed - Opened by vzickus over 6 years ago - 11 comments