Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / hammerlab/coclobas issues and pull requests

#120 - Use more permissive rights for playground

Pull Request - State: closed - Opened by smondet about 7 years ago

#119 - Use bash instead of Sh for AWS jobs

Issue - State: closed - Opened by smondet over 7 years ago - 4 comments

#118 - potential problem with future `ppx_deriving` versions

Issue - State: open - Opened by smondet over 7 years ago

#117 - Misc fixes for the GKE

Pull Request - State: closed - Opened by smondet over 7 years ago

#116 - Cannot create NFS mounts that are directly IP-addresses

Issue - State: closed - Opened by smondet over 7 years ago - 1 comment

#115 - Add CPU/memory limits to local-docker jobs

Pull Request - State: closed - Opened by smondet over 7 years ago

#114 - Generalize saving of `logs`, `describe`

Pull Request - State: closed - Opened by smondet over 7 years ago - 3 comments

#113 - Make GKE-image-type configurable

Pull Request - State: closed - Opened by smondet over 7 years ago - 2 comments

#111 - Logs should be captured (so kube doesn't lose them) when the job is done

Issue - State: closed - Opened by ihodes over 7 years ago - 7 comments
Labels: bug, enhancement

#110 - Aws-batch improvements

Pull Request - State: closed - Opened by smondet over 7 years ago

#108 - Aws-job scripts + better display of the job's state

Pull Request - State: closed - Opened by smondet over 7 years ago

#107 - Improve plugin display

Pull Request - State: closed - Opened by smondet over 7 years ago - 4 comments

#106 - Make Coclobas build with Ketrew `master`

Pull Request - State: closed - Opened by smondet over 7 years ago - 1 comment

#105 - make `Aws_batch_job.kill` more transactional, try to wait?

Issue - State: open - Opened by smondet over 7 years ago

#104 - Add AWS-Batch support (issue #94)

Pull Request - State: closed - Opened by smondet over 7 years ago - 1 comment

#103 - Make the server-status query answer more information

Issue - State: closed - Opened by smondet over 7 years ago - 1 comment

#102 - Make `logs` & co queries use the Ketrew markup

Issue - State: closed - Opened by smondet over 7 years ago - 1 comment

#101 - Status should report the number of "errors"

Issue - State: closed - Opened by smondet over 7 years ago - 1 comment

#100 - coclobas-kube loses kubectl-logs

Issue - State: open - Opened by e5c over 7 years ago
Labels: bug

#99 - Add CLUSTER_MACHINE_TYPE option to please.sh

Pull Request - State: closed - Opened by tavinathanson over 7 years ago

#98 - Fix `coclobas --version`

Pull Request - State: closed - Opened by smondet over 7 years ago

#97 - Update docs and `opam` setup

Pull Request - State: closed - Opened by smondet over 7 years ago

#96 - Add more backoff from start/update errors

Pull Request - State: closed - Opened by smondet over 7 years ago - 5 comments

#95 - Use exponential back-off for checking job status & job submission

Issue - State: closed - Opened by ihodes over 7 years ago - 1 comment
Labels: enhancement

#94 - AWS backend for Coclobas

Issue - State: open - Opened by ihodes almost 8 years ago
Labels: enhancement

#93 - Rewrite the `README.md` (#77)

Pull Request - State: closed - Opened by smondet almost 8 years ago - 2 comments

#92 - Use `-a` option of `kubectl get pod <pod>`

Pull Request - State: closed - Opened by smondet almost 8 years ago

#91 - Make plugin local-docker jobs more configurable

Pull Request - State: closed - Opened by smondet almost 8 years ago

#90 - Non kube jobs

Pull Request - State: closed - Opened by smondet almost 8 years ago - 2 comments

#89 - Add CPU/memory limits to Local-docker jobs

Issue - State: closed - Opened by smondet almost 8 years ago - 1 comment

#88 - Make tests over SSH connections more robust

Issue - State: closed - Opened by smondet almost 8 years ago - 1 comment

#87 - Add gsutil support to the docker image

Issue - State: open - Opened by julia326 almost 8 years ago

#86 - Make gcloud kube cluster optional

Issue - State: closed - Opened by smondet almost 8 years ago

#85 - Document how to retrieve Coclobas logs

Issue - State: open - Opened by ihodes almost 8 years ago
Labels: Doc

#84 - Create simple `docker run` local scheduler

Issue - State: closed - Opened by smondet almost 8 years ago

#83 - Make `Job` generic module

Issue - State: closed - Opened by smondet almost 8 years ago

#82 - Extend Coclobas to non-gcloud

Issue - State: closed - Opened by smondet almost 8 years ago
Labels: Epic

#81 - Set the `$PATH` properly

Pull Request - State: closed - Opened by smondet almost 8 years ago

#80 - Return kubectl errors instead of just Bad_request messages

Issue - State: open - Opened by smondet almost 8 years ago

#79 - If a job fails very quickly, we never get any logs

Issue - State: open - Opened by ihodes almost 8 years ago - 5 comments
Labels: bug

#78 - Use proper hash function for log names

Issue - State: open - Opened by smondet almost 8 years ago

#77 - Document what coclobas does

Issue - State: closed - Opened by ihodes almost 8 years ago - 3 comments
Labels: Doc

#76 - Credentials error with Kubernetes

Issue - State: open - Opened by smondet about 8 years ago
Labels: question

#75 - Detect and retry jobs that Kubernetes failed to start

Issue - State: open - Opened by smondet about 8 years ago - 3 comments
Labels: question

#74 - Make `cluster-size + 5` configurable

Issue - State: open - Opened by smondet about 8 years ago

#73 - Web Scale

Pull Request - State: closed - Opened by smondet about 8 years ago - 2 comments

#72 - GC the git db

Pull Request - State: closed - Opened by smondet about 8 years ago - 1 comment

#71 - Keep largest logs instead of latest logs

Pull Request - State: closed - Opened by smondet about 8 years ago - 1 comment

#70 - Configure machine types

Pull Request - State: closed - Opened by smondet about 8 years ago - 1 comment

#69 - Allow configuration of "machine type" from the CLI

Issue - State: closed - Opened by ihodes about 8 years ago
Labels: enhancement

#68 - Non-kube backend for Coclobas

Issue - State: closed - Opened by ihodes about 8 years ago - 1 comment
Labels: enhancement

#67 - Should job be in Still/started_running state if it's "pending"?

Issue - State: closed - Opened by ihodes about 8 years ago - 4 comments
Labels: question

#66 - Allow a given number of starting errors

Pull Request - State: closed - Opened by smondet about 8 years ago - 2 comments

#65 - Kube-error: "google: could not find default credentials"

Issue - State: closed - Opened by smondet about 8 years ago
Labels: FAQ

#64 - Publish to OPAM

Issue - State: closed - Opened by hammer about 8 years ago - 3 comments

#63 - Can't check kubectl-logs for some jobs

Issue - State: closed - Opened by ihodes about 8 years ago - 5 comments
Labels: bug

#62 - `kubectl create -f` failing intermitantly

Issue - State: closed - Opened by ihodes about 8 years ago - 2 comments
Labels: bug

#61 - Add the `graphiviz` package to the `Dockerfile`

Pull Request - State: closed - Opened by smondet about 8 years ago - 1 comment

#60 - Consider new DB

Issue - State: closed - Opened by ihodes about 8 years ago - 8 comments
Labels: question

#59 - NetMHC conf: fix the name of the environment variable name for NetMHCcons

Pull Request - State: closed - Opened by armish about 8 years ago

#58 - Use `gci` (or another alternative) as the base node image

Issue - State: open - Opened by armish about 8 years ago - 5 comments
Labels: enhancement, external

#57 - Use `container-vm` GCloud image

Pull Request - State: closed - Opened by smondet about 8 years ago

#56 - Losing logs

Issue - State: closed - Opened by ihodes about 8 years ago - 5 comments
Labels: bug

#55 - Improve display of job status in plugin

Pull Request - State: closed - Opened by smondet about 8 years ago

#54 - "display" tab should always be displayed in Ketrew GUI

Issue - State: closed - Opened by ihodes about 8 years ago - 1 comment
Labels: bug

#53 - Add Client.get_job_list and the Server endpoint

Pull Request - State: closed - Opened by ihodes about 8 years ago - 1 comment

#52 - First pass at Client CLI

Pull Request - State: closed - Opened by ihodes about 8 years ago - 2 comments

#51 - Setting max-nodes on a running cluster doesn't change the max nodes

Issue - State: open - Opened by ihodes about 8 years ago
Labels: Doc

#50 - Allow some configuration of the server

Pull Request - State: closed - Opened by smondet about 8 years ago

#49 - Update README with a setup guide

Pull Request - State: closed - Opened by ihodes about 8 years ago - 2 comments

#48 - Require minversion of ppx_deriving_yojson

Pull Request - State: closed - Opened by ihodes about 8 years ago

#47 - NetMHC configuration support

Pull Request - State: closed - Opened by armish about 8 years ago - 2 comments

#46 - Better Display in Plugin

Pull Request - State: closed - Opened by smondet about 8 years ago - 1 comment

#45 - README

Issue - State: closed - Opened by ihodes about 8 years ago - 1 comment
Labels: Doc

#44 - Hard to find stdout

Issue - State: open - Opened by iskandr about 8 years ago - 2 comments
Labels: enhancement, external

#43 - Ketrewplugin:

Issue - State: closed - Opened by ihodes about 8 years ago
Labels: enhancement

#42 - Errors getting pods crashing workflow

Issue - State: open - Opened by ihodes about 8 years ago - 2 comments
Labels: bug

#41 - Install `gcloudnfs` with the `Dockerfile`

Pull Request - State: closed - Opened by smondet about 8 years ago - 3 comments

#40 - Rename to Numpy4DOS

Issue - State: closed - Opened by hammer about 8 years ago

#39 - Save outputs of `Kube_job.{describe,logs}`

Pull Request - State: closed - Opened by smondet about 8 years ago - 4 comments

#38 - Ketrew plugin: make dates readable

Issue - State: closed - Opened by smondet about 8 years ago - 1 comment

#37 - Save latest `describe` and `logs` of Kube-jobs

Issue - State: closed - Opened by smondet about 8 years ago

#36 - Automatic/partial/selective clean-up of logs

Issue - State: open - Opened by smondet about 8 years ago

#35 - provide `Client.*` functions on the CLI

Issue - State: open - Opened by smondet about 8 years ago
Labels: enhancement

#34 - docker/please.sh: wait for `Ready`

Issue - State: open - Opened by smondet about 8 years ago

#33 - Allow errors from `Kube_job.get_status_json`

Pull Request - State: closed - Opened by smondet about 8 years ago - 2 comments

#32 - Improve dockerfile

Pull Request - State: closed - Opened by smondet about 8 years ago

#31 - Add a "script" tab for Ketrew plugin

Issue - State: closed - Opened by ihodes about 8 years ago - 1 comment

#30 - Make a nice "status" page for the ketrew backend that's easy to read

Issue - State: closed - Opened by ihodes about 8 years ago - 2 comments

#29 - Store kube logs

Issue - State: closed - Opened by ihodes about 8 years ago - 2 comments

#28 - Fix job killing

Pull Request - State: closed - Opened by smondet about 8 years ago - 1 comment

#27 - Add a file-tree backend to the `Log` module

Pull Request - State: closed - Opened by smondet about 8 years ago - 1 comment

#26 - Improve cluster subcommand

Pull Request - State: closed - Opened by smondet about 8 years ago - 1 comment

#25 - Add biokepi machine

Pull Request - State: closed - Opened by smondet about 8 years ago - 3 comments

#24 - Expose GZip-level in `Storage.make`

Pull Request - State: closed - Opened by smondet about 8 years ago - 1 comment

#23 - Make some Client errors recoverable

Pull Request - State: closed - Opened by smondet about 8 years ago - 1 comment

#22 - Point `docker/README.md` at the `:latest` tag

Pull Request - State: closed - Opened by smondet about 8 years ago - 1 comment

#21 - Add empty logs service

Pull Request - State: closed - Opened by smondet about 8 years ago - 1 comment