Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / hail-is/hail issues and pull requests
#13372 - [batch] maybe simplify jobs_after_update
Pull Request -
State: closed - Opened by danking about 1 year ago
- 13 comments
Labels: migration
#13370 - [Snyk] Security upgrade cryptography from 41.0.2 to 41.0.3
Pull Request -
State: closed - Opened by danking about 1 year ago
- 1 comment
#13366 - [Snyk] Security upgrade cryptography from 41.0.2 to 41.0.3
Pull Request -
State: closed - Opened by danking about 1 year ago
- 1 comment
#13365 - [Snyk] Security upgrade cryptography from 41.0.2 to 41.0.3
Pull Request -
State: closed - Opened by danking about 1 year ago
- 1 comment
#13356 - [query] In Google, large pipelines which encounter transient errors often fail to cleanly restart.
Issue -
State: closed - Opened by chrisvittal about 1 year ago
- 5 comments
Labels: bug
#13355 - [compiler] rewrite ExtractIntervalFilters to be more robust
Pull Request -
State: closed - Opened by patrick-schultz about 1 year ago
#13351 - [query] In Azure, QoB sees elevated rates of weird errors from the Azure Blob Storage SDK
Issue -
State: closed - Opened by danking about 1 year ago
- 7 comments
Labels: bug, query
#13346 - [query] bad error message when user needs to use array_elements_required=False
Issue -
State: closed - Opened by danking about 1 year ago
- 2 comments
Labels: bug, query
#13339 - [query] error when annotating a matrix table with a table (joins)
Issue -
State: open - Opened by patrick-schultz about 1 year ago
- 11 comments
Labels: bug
#13336 - [query] tableaggregate o tableparallelize should be local
Pull Request -
State: closed - Opened by danking about 1 year ago
- 4 comments
#13333 - [query] allow inteval filters to work with indirect row key
Pull Request -
State: closed - Opened by patrick-schultz about 1 year ago
#13332 - [batch] The GCP logging client breaks invariants when processing activity logs
Issue -
State: open - Opened by daniel-goldstein about 1 year ago
Labels: bug
#13332 - [batch] The GCP logging client breaks invariants when processing activity logs
Issue -
State: open - Opened by daniel-goldstein about 1 year ago
Labels: bug
#13331 - [ci] Add easier way to add all production developers to a dev namespace
Pull Request -
State: closed - Opened by daniel-goldstein about 1 year ago
- 1 comment
#13328 - Batch front-end pods cannot handle large job logs
Issue -
State: closed - Opened by daniel-goldstein about 1 year ago
Labels: bug
#13324 - Batch Driver Does not shut down tasks in the correct order
Issue -
State: open - Opened by daniel-goldstein about 1 year ago
Labels: bug
#13324 - Batch Driver Does not shut down tasks in the correct order
Issue -
State: open - Opened by daniel-goldstein about 1 year ago
Labels: bug
#13324 - Batch Driver Does not shut down tasks in the correct order
Issue -
State: open - Opened by daniel-goldstein about 1 year ago
Labels: bug
#13323 - [Snyk] Security upgrade tornado from 6.2 to 6.3.2
Pull Request -
State: closed - Opened by danking about 1 year ago
- 1 comment
#13322 - [batch] Stream job logs in the batch front-end
Pull Request -
State: closed - Opened by daniel-goldstein about 1 year ago
#13318 - [batch] Azure preemption rate was too high due to our set point for spot billing prices
Issue -
State: closed - Opened by jigold about 1 year ago
- 1 comment
Labels: bug
#13317 - [compiler] incremental hashing based on Threefry
Pull Request -
State: closed - Opened by patrick-schultz about 1 year ago
#13316 - [Snyk] Security upgrade certifi from 2023.5.7 to 2023.7.22
Pull Request -
State: closed - Opened by danking about 1 year ago
#13312 - [query] unexpectedly slow queries in AoU RWB
Issue -
State: open - Opened by danking about 1 year ago
Labels: new-feature, query
#13309 - [Snyk] Security upgrade certifi from 2023.5.7 to 2023.7.22
Pull Request -
State: closed - Opened by danking about 1 year ago
- 1 comment
#13305 - [Snyk] Security upgrade certifi from 2023.5.7 to 2023.7.22
Pull Request -
State: closed - Opened by danking about 1 year ago
- 1 comment
#13304 - [Snyk] Security upgrade certifi from 2023.5.7 to 2023.7.22
Pull Request -
State: closed - Opened by danking about 1 year ago
- 1 comment
#13296 - [Snyk] Security upgrade certifi from 2023.5.7 to 2023.7.22
Pull Request -
State: closed - Opened by danking about 1 year ago
- 1 comment
#13294 - [Snyk] Security upgrade certifi from 2023.5.7 to 2023.7.22
Pull Request -
State: closed - Opened by danking about 1 year ago
- 1 comment
#13287 - [query] bug in group_cols_by
Issue -
State: closed - Opened by anh151 about 1 year ago
- 5 comments
Labels: bug
#13286 - [Snyk] Security upgrade aiohttp from 3.8.4 to 3.8.5
Pull Request -
State: closed - Opened by danking about 1 year ago
- 1 comment
#13285 - [Snyk] Security upgrade aiohttp from 3.8.4 to 3.8.5
Pull Request -
State: closed - Opened by danking about 1 year ago
- 1 comment
#13284 - [Snyk] Security upgrade aiohttp from 3.8.4 to 3.8.5
Pull Request -
State: closed - Opened by danking about 1 year ago
- 1 comment
#13283 - [Snyk] Security upgrade aiohttp from 3.8.4 to 3.8.5
Pull Request -
State: closed - Opened by danking about 1 year ago
- 1 comment
#13282 - [Snyk] Security upgrade aiohttp from 3.8.4 to 3.8.5
Pull Request -
State: closed - Opened by danking about 1 year ago
- 1 comment
#13279 - [hailctl] Initialize Hail Environment Interactively
Pull Request -
State: closed - Opened by jigold about 1 year ago
- 22 comments
#13269 - [batch] Scheduler and autoscaler deadlocked
Issue -
State: open - Opened by jigold about 1 year ago
Labels: bug
#13268 - [batch] Fix autoscaler / scheduler deadlock with regions
Pull Request -
State: closed - Opened by jigold about 1 year ago
#13268 - [batch] Fix autoscaler / scheduler deadlock with regions
Pull Request -
State: closed - Opened by jigold about 1 year ago
#13259 - [security] update scipy pin to 1.11.1
Pull Request -
State: closed - Opened by danking about 1 year ago
- 3 comments
#13256 - [auth] deleting a user is broken in the UI
Issue -
State: open - Opened by jigold about 1 year ago
- 1 comment
Labels: bug
#13256 - [auth] deleting a user is broken in the UI
Issue -
State: open - Opened by jigold about 1 year ago
- 1 comment
Labels: bug
#13256 - [auth] deleting a user is broken in the UI
Issue -
State: open - Opened by jigold about 1 year ago
- 3 comments
Labels: bug, batch
#13254 - [ci/ui] fixes 500 when there are no jobs to display
Pull Request -
State: closed - Opened by iris-garden about 1 year ago
#13250 - NormalizeNames at most once
Issue -
State: open - Opened by ehigham about 1 year ago
Labels: bug, performance, infrastructure
#13250 - NormalizeNames at most once
Issue -
State: open - Opened by ehigham about 1 year ago
Labels: bug, performance, infrastructure
#13249 - [query] gnomAD 2.1.1 sites table VCF is not parseable with Hail
Issue -
State: closed - Opened by danking about 1 year ago
- 1 comment
#13248 - [query] whole stage codegen fails with exit code 137 on partitions with lots of alleles
Issue -
State: open - Opened by danking about 1 year ago
- 2 comments
Labels: bug
#13248 - [query] whole stage codegen fails with exit code 137 on partitions with lots of alleles
Issue -
State: open - Opened by danking about 1 year ago
- 2 comments
Labels: bug
#13248 - [query] whole stage codegen fails with exit code 137 on partitions with lots of alleles
Issue -
State: open - Opened by danking about 1 year ago
- 3 comments
Labels: bug, query
#13247 - [Snyk] Security upgrade cryptography from 41.0.1 to 41.0.2
Pull Request -
State: closed - Opened by danking about 1 year ago
- 1 comment
#13242 - [qob] log4j errors are showing up in JVM container logs
Issue -
State: open - Opened by jigold about 1 year ago
- 1 comment
Labels: bug
#13242 - [qob] log4j errors are showing up in JVM container logs
Issue -
State: open - Opened by jigold about 1 year ago
- 2 comments
Labels: bug
#13242 - [qob] log4j errors are showing up in JVM container logs
Issue -
State: open - Opened by jigold about 1 year ago
- 1 comment
Labels: bug
#13241 - [query] reenable long dormant localize_entries tests
Pull Request -
State: closed - Opened by patrick-schultz about 1 year ago
#13235 - [lint] runs black on hail/
Pull Request -
State: closed - Opened by iris-garden about 1 year ago
- 1 comment
Labels: prio:low, WIP
#13228 - Bump scipy from 1.9.3 to 1.11.1 in /hail/python
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 2 comments
Labels: dependencies, python
#13224 - [hailctl] Autocomplete for hailctl config {get,set,unset}
Pull Request -
State: closed - Opened by jigold over 1 year ago
- 7 comments
#13214 - [query] refactor BaseIR so children only exposes iterable interface
Pull Request -
State: closed - Opened by patrick-schultz over 1 year ago
- 3 comments
#13209 - Revert "[batch] Mount worker deploy config instead of using k8s secret"
Pull Request -
State: closed - Opened by daniel-goldstein over 1 year ago
#13208 - [infra] Revert GKE metadata workload identity config
Pull Request -
State: closed - Opened by daniel-goldstein over 1 year ago
Labels: NIST 800-53
#13201 - [batch/ui] redesigns jobs table
Pull Request -
State: open - Opened by iris-garden over 1 year ago
Labels: prio:low, WIP
#13201 - [batch/ui] redesigns jobs table
Pull Request -
State: open - Opened by iris-garden over 1 year ago
Labels: prio:low, WIP
#13200 - [batch] restricts operations to GCS buckets using hot storage
Pull Request -
State: closed - Opened by iris-garden over 1 year ago
- 1 comment
#13195 - hailctl config is too user unfriendly; it should: error or warn on invalid names and document the list of valid names
Issue -
State: closed - Opened by danking over 1 year ago
- 2 comments
#13192 - [batch] Add new ResourceGroup items to `_resources_inverse`
Pull Request -
State: closed - Opened by jmarshall over 1 year ago
- 3 comments
#13191 - ResourceGroup issues modelling writing a bgzipped file and its TBI index via `write_output`
Issue -
State: open - Opened by jmarshall over 1 year ago
- 10 comments
Labels: new-feature
#13191 - ResourceGroup issues modelling writing a bgzipped file and its TBI index via `write_output`
Issue -
State: open - Opened by jmarshall over 1 year ago
- 8 comments
Labels: new-feature
#13188 - [WIP] Skeleton of staged interval join implementation
Pull Request -
State: closed - Opened by tpoterba over 1 year ago
- 1 comment
#13172 - Revert "[query] Zstdandard (Zstd) compression"
Pull Request -
State: closed - Opened by daniel-goldstein over 1 year ago
#13166 - [query] add eigh method
Pull Request -
State: closed - Opened by patrick-schultz over 1 year ago
#13162 - [docker] hailgenetics/hail should have tags for each supported Python version
Issue -
State: closed - Opened by danking over 1 year ago
- 1 comment
Labels: new-feature
#13159 - [Snyk] Security upgrade requests from 2.28.2 to 2.31.0
Pull Request -
State: closed - Opened by danking over 1 year ago
#13158 - [Snyk] Security upgrade requests from 2.28.2 to 2.31.0
Pull Request -
State: closed - Opened by danking over 1 year ago
#13131 - [auth] Allow use of cloud access tokens for hail batch authorization
Pull Request -
State: closed - Opened by daniel-goldstein over 1 year ago
- 11 comments
Labels: full-deploy, terraform, NIST 800-53
#13107 - [Snyk] Security upgrade requests from 2.28.2 to 2.31.0
Pull Request -
State: open - Opened by snyk-bot over 1 year ago
#13106 - [query] Specialize export_blocks into its own writer
Pull Request -
State: closed - Opened by chrisvittal over 1 year ago
- 2 comments
#13105 - [infra] apply a PDB to kube-dns
Pull Request -
State: open - Opened by danking over 1 year ago
#13104 - [qob] retry stream is already closed
Pull Request -
State: closed - Opened by danking over 1 year ago
#13103 - [ci] use buildah
Pull Request -
State: open - Opened by danking over 1 year ago
#13102 - Buildah
Pull Request -
State: closed - Opened by danking over 1 year ago
#13101 - [aiotools] Properly close azure storage clients
Pull Request -
State: open - Opened by jigold over 1 year ago
- 2 comments
#13100 - [Snyk] Security upgrade requests from 2.28.2 to 2.31.0
Pull Request -
State: open - Opened by danking over 1 year ago
#13099 - [query] suggest --only-binary=:all: if pip fails to build from source
Pull Request -
State: closed - Opened by danking over 1 year ago
#13098 - [batch] Add resource usage plots for JVM containers
Pull Request -
State: open - Opened by jigold over 1 year ago
- 3 comments
#13097 - [Snyk] Security upgrade requests from 2.28.2 to 2.31.0
Pull Request -
State: open - Opened by snyk-bot over 1 year ago
#13096 - Bump requests from 2.28.2 to 2.31.0 in /ci
Pull Request -
State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python
#13095 - Bump requests from 2.28.2 to 2.31.0 in /auth
Pull Request -
State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python
#13094 - Bump requests from 2.28.2 to 2.31.0 in /gear
Pull Request -
State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python
#13093 - Bump requests from 2.28.2 to 2.31.0 in /hail/python
Pull Request -
State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python
#13092 - Bump requests from 2.28.2 to 2.31.0 in /hail/python/dev
Pull Request -
State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python
#13091 - Bump requests from 2.28.2 to 2.31.0 in /hail/python/hailtop
Pull Request -
State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python
#13090 - [test-dataproc] add subnet
Pull Request -
State: closed - Opened by danking over 1 year ago
Labels: prio:high
#13089 - [query] fix requester pays in all Query backends
Pull Request -
State: open - Opened by danking over 1 year ago
#13088 - [batch] Exponential backoff of resource usage monitoring
Pull Request -
State: closed - Opened by jigold over 1 year ago
#13087 - [docker] Add rsync to hail-ubuntu image
Pull Request -
State: closed - Opened by jigold over 1 year ago
#13086 - [batch] Job Groups
Pull Request -
State: closed - Opened by jigold over 1 year ago
- 3 comments
Labels: WIP, migration
#13085 - [release] 0.2.117
Pull Request -
State: closed - Opened by danking over 1 year ago
- 1 comment
#13084 - [auth] Allow use of cloud access tokens for hail batch authorization
Pull Request -
State: closed - Opened by daniel-goldstein over 1 year ago
#13083 - [batch] Fix attempt resources after update trigger to use deduped resource id
Pull Request -
State: open - Opened by jigold over 1 year ago
- 1 comment
Labels: WIP, migration