gutsche-lab/blik issues and pull requests

#143 - reducing coordinate opacity makes black dots on the image layer

Issue - State: open - Opened by McHaillet over 1 year ago - 6 comments

#142 - issue with star file reading?

Issue - State: open - Opened by McHaillet over 1 year ago - 6 comments

#141 - saving star file does not save pixel size correctly

Issue - State: open - Opened by brisvag over 1 year ago

#140 - saving files should add extension if needed

Issue - State: open - Opened by brisvag over 1 year ago

#139 - Surface picking

Pull Request - State: closed - Opened by brisvag almost 2 years ago - 1 comment

#138 - Add hdf reader

Pull Request - State: closed - Opened by brisvag almost 2 years ago

#137 - Simple particle picker

Pull Request - State: closed - Opened by brisvag almost 2 years ago - 1 comment

#136 - fix vector generation

Pull Request - State: closed - Opened by brisvag almost 2 years ago - 1 comment

#135 - ci(dependabot): bump actions/setup-python from 2 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#134 - ci(dependabot): bump codecov/codecov-action from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#133 - Small changes for napari 0.4.17

Pull Request - State: closed - Opened by brisvag about 2 years ago - 1 comment

#132 - Update to using cryotypes and cryohub and new machinery.

Pull Request - State: closed - Opened by brisvag over 2 years ago - 1 comment

#131 - Failed to load mrc

Issue - State: closed - Opened by jdeschamps over 2 years ago - 9 comments

#130 - Dependency issues

Issue - State: closed - Opened by jdeschamps over 2 years ago - 2 comments

#129 - Use the new cryotypes

Pull Request - State: closed - Opened by brisvag over 2 years ago

#128 - correct link to image

Pull Request - State: closed - Opened by haesleinhuepf almost 3 years ago - 1 comment

#127 - Images

Issue - State: closed - Opened by brisvag almost 3 years ago - 1 comment
Labels: documentation

#126 - Update packaging and CI

Pull Request - State: closed - Opened by brisvag almost 3 years ago - 1 comment

#125 - Napari plugin

Pull Request - State: closed - Opened by brisvag about 3 years ago - 3 comments

#124 - ready to run containers

Pull Request - State: closed - Opened by truatpasteurdotfr about 3 years ago

#123 - update readme

Pull Request - State: closed - Opened by brisvag about 3 years ago - 1 comment

#122 - Lazy loading with dask

Pull Request - State: closed - Opened by brisvag about 3 years ago - 2 comments

#121 - failed reading of star file

Issue - State: open - Opened by alisterburt over 3 years ago
Labels: bug

#120 - Use dask

Issue - State: closed - Opened by brisvag over 3 years ago - 5 comments

#119 - License and CLI updates, bump deps

Pull Request - State: closed - Opened by brisvag over 3 years ago - 3 comments

#118 - update name in workflows

Pull Request - State: closed - Opened by brisvag over 3 years ago

#117 - Multi dataset

Pull Request - State: closed - Opened by brisvag over 3 years ago

#116 - [WIP] Generalize 3D

Pull Request - State: closed - Opened by brisvag over 3 years ago

#115 - new logo

Pull Request - State: closed - Opened by brisvag over 3 years ago

#114 - Blik

Pull Request - State: closed - Opened by brisvag over 3 years ago

#113 - delay imports for speedup

Pull Request - State: closed - Opened by brisvag over 3 years ago - 2 comments

#112 - [WIP] Particle mesh depictor

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#111 - updated tocs to jupyterbook 0.11

Pull Request - State: closed - Opened by brisvag over 3 years ago

#110 - fixed workflows

Pull Request - State: closed - Opened by brisvag over 3 years ago

#109 - Pushing all to master

Pull Request - State: closed - Opened by brisvag over 3 years ago

#108 - Auto ndim vis

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#107 - removed xarray

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#106 - added no-show flag

Pull Request - State: closed - Opened by brisvag over 3 years ago

#105 - sphereblock is now new-style multiblock

Pull Request - State: closed - Opened by brisvag over 3 years ago - 3 comments

#104 - added keybindings for next/previous volume

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#103 - Make scaling more consistent

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#102 - make it easy to access the shown volume programmatically

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#101 - Improve io

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#100 - fix star pixel size

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#99 - Particle mesh depictor

Pull Request - State: closed - Opened by brisvag over 3 years ago - 4 comments

#98 - Fixed Meshblock

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#97 - Documentation

Issue - State: closed - Opened by brisvag over 3 years ago

#96 - [WIP] Release stuff

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#95 - More tests

Pull Request - State: closed - Opened by brisvag over 3 years ago

#94 - protect properties from changes

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#93 - Improved default repr

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#92 - Separated concepts of parent and view

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#91 - Remove non-visualisation code

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#90 - Fix relion shifts

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#89 - Import times are SLOW

Issue - State: closed - Opened by brisvag over 3 years ago - 3 comments

#88 - Clean up non-visualization code

Issue - State: closed - Opened by brisvag over 3 years ago

#87 - automatically add scale bar with peepingtom unit

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#86 - Updates to depiction

Pull Request - State: closed - Opened by brisvag over 3 years ago - 3 comments

#85 - Convert meshblock to a multiblock

Issue - State: closed - Opened by brisvag over 3 years ago - 1 comment

#84 - [WIP] IO updates and lazy loading

Pull Request - State: closed - Opened by brisvag over 3 years ago - 3 comments

#83 - RELION shift handling may be incorrect

Issue - State: closed - Opened by alisterburt over 3 years ago - 3 comments
Labels: bug

#82 - check env exposed in codecov breach

Pull Request - State: closed - Opened by brisvag almost 4 years ago - 1 comment

#81 - Gui test

Pull Request - State: closed - Opened by brisvag almost 4 years ago

#80 - Refactor Viewer code and addition of volume selector

Pull Request - State: closed - Opened by brisvag almost 4 years ago - 6 comments

#79 - Data parsing flow/architecture

Issue - State: closed - Opened by alisterburt almost 4 years ago - 2 comments

#78 - First pass at a delayed DataBlock interface

Pull Request - State: closed - Opened by alisterburt almost 4 years ago - 8 comments

#77 - mmap reading of mrc files

Pull Request - State: closed - Opened by alisterburt almost 4 years ago - 5 comments

#76 - [WIP] Cleaning up old code, getting ready for realease

Pull Request - State: closed - Opened by brisvag almost 4 years ago - 4 comments

#75 - RELION 3.0/3.1 STAR handling bugfix

Pull Request - State: closed - Opened by brisvag almost 4 years ago - 4 comments

#74 - move to _model.py naming scheme for base objects which are subclassed (datablock, multiblock, naparidepictor)

Issue - State: closed - Opened by alisterburt almost 4 years ago - 7 comments

#73 - 'Alchemist' renaming proposal

Issue - State: closed - Opened by alisterburt almost 4 years ago - 5 comments

#72 - Transformblock

Issue - State: closed - Opened by brisvag almost 4 years ago - 5 comments

#71 - Autoscaling issues

Issue - State: closed - Opened by brisvag almost 4 years ago - 12 comments

#70 - The circle of life of a DataSet

Issue - State: closed - Opened by brisvag almost 4 years ago - 2 comments

#69 - Xarray and scaling

Pull Request - State: closed - Opened by brisvag almost 4 years ago - 3 comments

#68 - Massive PR, datamodel change.

Pull Request - State: closed - Opened by brisvag almost 4 years ago - 1 comment

#67 - Empty particleblocks (and probably other blocks) break things

Issue - State: closed - Opened by brisvag about 4 years ago - 2 comments

#66 - read starfile puts everything in properties

Issue - State: closed - Opened by brisvag about 4 years ago - 6 comments

#65 - Particle properties

Pull Request - State: closed - Opened by brisvag about 4 years ago - 3 comments

#64 - bugfix in reading of rln3 star files

Pull Request - State: closed - Opened by alisterburt about 4 years ago

#63 - peep particles together

Pull Request - State: closed - Opened by alisterburt about 4 years ago

#62 - support for reading dynamo table files

Pull Request - State: closed - Opened by alisterburt about 4 years ago

#61 - Test refactor

Pull Request - State: closed - Opened by alisterburt about 4 years ago - 2 comments

#60 - refactor star file reading

Pull Request - State: closed - Opened by alisterburt about 4 years ago - 3 comments

#59 - problems in refactored io

Issue - State: closed - Opened by alisterburt about 4 years ago - 5 comments

#58 - add reading of .map files

Pull Request - State: closed - Opened by alisterburt about 4 years ago - 1 comment

#57 - Add a basic CLI for the peep function

Pull Request - State: closed - Opened by alisterburt about 4 years ago - 1 comment

#56 - Many deprecation warnings raised by tests

Issue - State: closed - Opened by brisvag about 4 years ago - 1 comment

#55 - Second attempt at automatic packaging

Pull Request - State: closed - Opened by brisvag about 4 years ago

#47 - Bug fixes

Pull Request - State: closed - Opened by brisvag about 4 years ago

#46 - fixed old slider widgets

Pull Request - State: closed - Opened by brisvag about 4 years ago

#41 - Warning raised by dipoleblock

Issue - State: closed - Opened by brisvag about 4 years ago - 1 comment
Labels: bug

#36 - Eulerangles helper fails if only one matrix is passed

Issue - State: closed - Opened by brisvag about 4 years ago - 3 comments
Labels: bug

#32 - fixed problem with stacking (self was counted twice)

Pull Request - State: closed - Opened by brisvag about 4 years ago

#29 - Layer management for DataCrates

Issue - State: closed - Opened by alisterburt about 4 years ago - 4 comments

#28 - 3D interactivity

Issue - State: open - Opened by alisterburt about 4 years ago - 5 comments

#27 - add TransformBlock and DipoleBlock objects

Pull Request - State: closed - Opened by alisterburt about 4 years ago - 4 comments

#24 - sub-peepers and their methods: abstract classes?

Issue - State: closed - Opened by brisvag about 4 years ago - 7 comments

#19 - Rescaling data

Issue - State: closed - Opened by alisterburt about 4 years ago - 4 comments
Labels: enhancement

#17 - RefinementPeeper

Issue - State: closed - Opened by alisterburt about 4 years ago - 1 comment
Labels: enhancement

GitHub / gutsche-lab/blik issues and pull requests