Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / guigolab/bamstats issues and pull requests

#31 - bamstats not working with Ensembl GTF (with "gene_biotype" attribute)

Issue - State: open - Opened by usergsc almost 4 years ago - 2 comments

#30 - Add QC failed/passed reads stats

Issue - State: open - Opened by emi80 almost 4 years ago

#29 - Option -t requires an argument!

Issue - State: closed - Opened by nicolasalexandre21 over 4 years ago - 1 comment

#28 - Usage of the command line tool

Issue - State: closed - Opened by tushardave26 almost 5 years ago - 2 comments

#27 - NH tag value can have multiple types in BAM format

Issue - State: open - Opened by emi80 almost 5 years ago

#26 - Difference between Two Histograms Produced

Issue - State: closed - Opened by Rohit-Satyam almost 5 years ago - 2 comments

#25 - No coverage stats if the annotation does not have `gene` elements

Issue - State: closed - Opened by emi80 almost 5 years ago - 1 comment

#24 - Add protocol info to general stats

Issue - State: closed - Opened by emi80 about 5 years ago

#23 - Wrong merged intervals with unsorted annotation

Issue - State: closed - Opened by emi80 about 5 years ago - 1 comment

#22 - Switch to Go Modules

Issue - State: closed - Opened by emi80 about 5 years ago
Labels: enhancement

#21 - Insert size stats give misleading average and standard deviation

Issue - State: open - Opened by emi80 almost 6 years ago

#20 - Remove local GOPATH from panic stack trace

Issue - State: open - Opened by emi80 almost 6 years ago

#19 - Print usage when running without arguments

Issue - State: closed - Opened by emi80 almost 6 years ago

#18 - Picard NH tag is not an unsigned integer

Issue - State: closed - Opened by emi80 almost 6 years ago
Labels: bug

#17 - Add stats for RNA-seq following IHEC specs

Issue - State: closed - Opened by emi80 almost 6 years ago

#16 - Create a general method to output JSON from stats.Map

Issue - State: closed - Opened by emi80 over 6 years ago

#15 - Add Type() to Stats interface

Issue - State: closed - Opened by emi80 over 6 years ago

#14 - Parse gtf attributes and add them to Feature

Issue - State: closed - Opened by emi80 over 6 years ago

#13 - Add duplicates count to general stats

Issue - State: open - Opened by emi80 over 6 years ago

#12 - Set runtime cpu number as default instead of one

Issue - State: closed - Opened by emi80 over 6 years ago

#11 - Improve gtf parsing and index generation

Issue - State: closed - Opened by emi80 over 6 years ago

#10 - Add rnaseq stats and metrics

Issue - State: closed - Opened by emi80 over 6 years ago

#9 - Use Rtree bulk load for improving annotation index generation

Issue - State: closed - Opened by emi80 over 6 years ago

#8 - Support annotation in gtf format

Issue - State: closed - Opened by emi80 over 7 years ago

#7 - Coverage stats are reported for references that are not present in the annotation

Issue - State: closed - Opened by emi80 over 7 years ago
Labels: bug

#6 - Add statistics for reads in +/- strand

Issue - State: open - Opened by emi80 over 7 years ago

#5 - Add reference stats

Issue - State: open - Opened by emi80 over 7 years ago

#4 - Add support for BAM random access through index

Issue - State: closed - Opened by emi80 almost 8 years ago

#3 - Infer experiment strandedness

Issue - State: open - Opened by emi80 almost 8 years ago

#2 - Improve annotation index generation

Issue - State: closed - Opened by emi80 almost 8 years ago
Labels: enhancement

#1 - Support compressed annotation file

Issue - State: closed - Opened by emi80 almost 8 years ago
Labels: enhancement